Clc06G09930 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G09930
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Pentatricopeptide repeat-containing protein
Location	ClcChr06: 13396754 .. 13397065 (+)
RNA-Seq Expression	Clc06G09930
Synteny	Clc06G09930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTGCGATGCGGACTCATTACTTATTGCTAGCAAGGCTAGTGGAGTTACTTCAGGGGTGGAGACTTCATCTTCATGTGCTAAGAATATTGTTAAAAAAATGATAAAAGGAGCATCTGTGCCTGATGTAGGGACTTTTAATTCTCTGATTGATGTTATATGTAACTCTGGAGAAGTTTATTTTTGCATTAATATTTTTCATGAGGTGTGCAAGTTGGGGCTTTGTCCTGATATAAATACCTACAAGAATTCAATTCCAACTAGTTTGAAAGTTGGTAGGATTGATGAAGCTTTCAAGCTTTTGCATTGA

mRNA sequence

ATGTGTTGCGATGCGGACTCATTACTTATTGCTAGCAAGGCTAGTGGAGTTACTTCAGGGGTGGAGACTTCATCTTCATGTGCTAAGAATATTGTTAAAAAAATGATAAAAGGAGCATCTGTGCCTGATGTAGGGACTTTTAATTCTCTGATTGATGTTATATGTAACTCTGGAGAAGTTTATTTTTGCATTAATATTTTTCATGAGGTGTGCAAGTTGGGGCTTTGTCCTGATATAAATACCTACAAGAATTCAATTCCAACTAGTTTGAAAGTTGGTAGGATTGATGAAGCTTTCAAGCTTTTGCATTGA

Coding sequence (CDS)

ATGTGTTGCGATGCGGACTCATTACTTATTGCTAGCAAGGCTAGTGGAGTTACTTCAGGGGTGGAGACTTCATCTTCATGTGCTAAGAATATTGTTAAAAAAATGATAAAAGGAGCATCTGTGCCTGATGTAGGGACTTTTAATTCTCTGATTGATGTTATATGTAACTCTGGAGAAGTTTATTTTTGCATTAATATTTTTCATGAGGTGTGCAAGTTGGGGCTTTGTCCTGATATAAATACCTACAAGAATTCAATTCCAACTAGTTTGAAAGTTGGTAGGATTGATGAAGCTTTCAAGCTTTTGCATTGA

Protein sequence

MCCDADSLLIASKASGVTSGVETSSSCAKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLLH

Homology

[Close]

BLAST of Clc06G09930 vs. NCBI nr
Match: XP_004142520.1 (pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Cucumis sativus] >KGN66807.1 hypothetical protein Csa_007547 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 2.1e-27
Identity = 62/76 (81.58%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 28  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIP 87
           AK++V+KM K  SVPD+GTFNSLIDVICNSGEV FCINIFHEVCKLGLCPDINTYK  IP
Sbjct: 267 AKDMVRKMTKEGSVPDIGTFNSLIDVICNSGEVDFCINIFHEVCKLGLCPDINTYKILIP 326

Query: 88  TSLKVGRIDEAFKLLH 104
            + KVGRIDEAF+LLH
Sbjct: 327 ATSKVGRIDEAFRLLH 342

[Close]

BLAST of Clc06G09930 vs. NCBI nr
Match: XP_038879743.1 (pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Benincasa hispida] >XP_038879744.1 pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Benincasa hispida] >XP_038879746.1 pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Benincasa hispida] >XP_038879747.1 pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Benincasa hispida])

HSP 1 Score: 132.5 bits (332), Expect = 2.1e-27
Identity = 62/76 (81.58%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 28  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIP 87
           AK++V+KM K  SVPD+GTFNSLIDVICNSGEV FCINIFHEVCKLGLCPDINTYK  IP
Sbjct: 277 AKDMVRKMTKEGSVPDIGTFNSLIDVICNSGEVDFCINIFHEVCKLGLCPDINTYKILIP 336

Query: 88  TSLKVGRIDEAFKLLH 104
            + KVGRIDEAF+LLH
Sbjct: 337 ATSKVGRIDEAFRLLH 352

[Close]

BLAST of Clc06G09930 vs. NCBI nr
Match: KAG7023899.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-26
Identity = 61/76 (80.26%), Postives = 69/76 (90.79%), Query Frame = 0


Query: 28  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIP 87
           AKN+V+KMIK  SVPD+GTFNSLI+VICNSGEV FCINI+HEVCKLGLCPDINTYK  IP
Sbjct: 279 AKNMVRKMIKEGSVPDLGTFNSLINVICNSGEVDFCINIYHEVCKLGLCPDINTYKILIP 338

Query: 88  TSLKVGRIDEAFKLLH 104
            + KVGRIDEAF+LL+
Sbjct: 339 ATSKVGRIDEAFRLLN 354

[Close]

BLAST of Clc06G09930 vs. NCBI nr
Match: XP_022151697.1 (pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Momordica charantia])

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-26
Identity = 61/76 (80.26%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 28  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIP 87
           AKN+V+KM K  SVPDV TFNSLI VICNSGEV FCINI+HEVCKLGLCPDINTYK  +P
Sbjct: 301 AKNMVRKMTKEGSVPDVSTFNSLISVICNSGEVDFCINIYHEVCKLGLCPDINTYKILVP 360

Query: 88  TSLKVGRIDEAFKLLH 104
            + KVGRIDEAFKLLH
Sbjct: 361 ATSKVGRIDEAFKLLH 376

[Close]

BLAST of Clc06G09930 vs. NCBI nr
Match: KAG6590295.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-26
Identity = 61/76 (80.26%), Postives = 69/76 (90.79%), Query Frame = 0


Query: 28  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIP 87
           AKN+V+KMIK  SVPD+GTFNSLI+VICNSGEV FCINI+HEVCKLGLCPDINTYK  IP
Sbjct: 279 AKNMVRKMIKEGSVPDLGTFNSLINVICNSGEVDFCINIYHEVCKLGLCPDINTYKILIP 338

Query: 88  TSLKVGRIDEAFKLLH 104
            + KVGRIDEAF+LL+
Sbjct: 339 ATSKVGRIDEAFRLLN 354

[Close]

BLAST of Clc06G09930 vs. ExPASy Swiss-Prot
Match: Q94JX6 (Pentatricopeptide repeat-containing protein At5g18390, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g18390 PE=2 SV=2)

HSP 1 Score: 97.4 bits (241), Expect = 9.8e-20
Identity = 45/76 (59.21%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 28  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIP 87
           AK +V KM KG  VPD+ TFN LI+ I  SGEV FCI +++  CKLGLC DI+TYK  IP
Sbjct: 271 AKEMVSKMTKGGFVPDIQTFNILIEAISKSGEVEFCIEMYYTACKLGLCVDIDTYKTLIP 330

Query: 88  TSLKVGRIDEAFKLLH 104
              K+G+IDEAF+LL+
Sbjct: 331 AVSKIGKIDEAFRLLN 346

[Close]

BLAST of Clc06G09930 vs. ExPASy Swiss-Prot
Match: Q0WVK7 (Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g05670 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.6e-06
Identity = 26/68 (38.24%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 35  MIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGR 94
           MI+    P+V T+ +LID +C  G++     + HE+ K+GL P+I TY + +    K G 
Sbjct: 447 MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN 506

Query: 95  IDEAFKLL 103
           I+EA KL+
Sbjct: 507 IEEAVKLV 514

[Close]

BLAST of Clc06G09930 vs. ExPASy Swiss-Prot
Match: P0C894 (Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana OX=3702 GN=At2g02150 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 8.0e-06
Identity = 27/69 (39.13%), Postives = 37/69 (53.62%), Query Frame = 0


Query: 29  KNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPT 88
           K   K MI   + P V T+N +ID +C  G+V     +F E+   GL PD  TY + I  
Sbjct: 247 KRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDG 306

Query: 89  SLKVGRIDE 98
             KVGR+D+
Sbjct: 307 FGKVGRLDD 315

[Close]

BLAST of Clc06G09930 vs. ExPASy Swiss-Prot
Match: Q9CAN0 (Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g63130 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 8.0e-06
Identity = 30/93 (32.26%), Postives = 49/93 (52.69%), Query Frame = 0


Query: 17  VTSGVETSSSC-------AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHE 76
           VT G+  +  C       A +++KKM +G   P V  +N++ID +CN   V   +N+F E
Sbjct: 222 VTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTE 281

Query: 77  VCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLL 103
           +   G+ P++ TY + I      GR  +A +LL
Sbjct: 282 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLL 314

[Close]

BLAST of Clc06G09930 vs. ExPASy Swiss-Prot
Match: Q9SI78 (Pentatricopeptide repeat-containing protein At1g62720 OS=Arabidopsis thaliana OX=3702 GN=At1g62720 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.3e-05
Identity = 25/74 (33.78%), Postives = 43/74 (58.11%), Query Frame = 0


Query: 28  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIP 87
           A ++V KM+K    PDV T +SLI+  C    V+  I++  ++ ++G  PD+  Y   I 
Sbjct: 123 ALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIID 182

Query: 88  TSLKVGRIDEAFKL 102
            S K+G +++A +L
Sbjct: 183 GSCKIGLVNDAVEL 196

[Close]

BLAST of Clc06G09930 vs. ExPASy TrEMBL
Match: A0A0A0M105 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G695420 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.0e-27
Identity = 62/76 (81.58%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 28  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIP 87
           AK++V+KM K  SVPD+GTFNSLIDVICNSGEV FCINIFHEVCKLGLCPDINTYK  IP
Sbjct: 267 AKDMVRKMTKEGSVPDIGTFNSLIDVICNSGEVDFCINIFHEVCKLGLCPDINTYKILIP 326

Query: 88  TSLKVGRIDEAFKLLH 104
            + KVGRIDEAF+LLH
Sbjct: 327 ATSKVGRIDEAFRLLH 342

[Close]

BLAST of Clc06G09930 vs. ExPASy TrEMBL
Match: A0A6J1DE73 (pentatricopeptide repeat-containing protein At5g18390, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111019612 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.6e-27
Identity = 61/76 (80.26%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 28  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIP 87
           AKN+V+KM K  SVPDV TFNSLI VICNSGEV FCINI+HEVCKLGLCPDINTYK  +P
Sbjct: 301 AKNMVRKMTKEGSVPDVSTFNSLISVICNSGEVDFCINIYHEVCKLGLCPDINTYKILVP 360

Query: 88  TSLKVGRIDEAFKLLH 104
            + KVGRIDEAFKLLH
Sbjct: 361 ATSKVGRIDEAFKLLH 376

[Close]

BLAST of Clc06G09930 vs. ExPASy TrEMBL
Match: A0A6J1H8G8 (pentatricopeptide repeat-containing protein At5g18390, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111461504 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.6e-27
Identity = 61/76 (80.26%), Postives = 69/76 (90.79%), Query Frame = 0


Query: 28  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIP 87
           AKN+V+KMIK  SVPD+GTFNSLI+VICNSGEV FCINI+HEVCKLGLCPDINTYK  IP
Sbjct: 279 AKNMVRKMIKEGSVPDLGTFNSLINVICNSGEVDFCINIYHEVCKLGLCPDINTYKILIP 338

Query: 88  TSLKVGRIDEAFKLLH 104
            + KVGRIDEAF+LL+
Sbjct: 339 ATSKVGRIDEAFRLLN 354

[Close]

BLAST of Clc06G09930 vs. ExPASy TrEMBL
Match: A0A5A7V4T7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3607G00300 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.5e-26
Identity = 60/76 (78.95%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 28  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIP 87
           AK++V+KM K   VPD+GTFNSLIDVICNSGEV FCINIFHEVCKLGLCPDINTYK  IP
Sbjct: 267 AKDMVRKMTKEGCVPDIGTFNSLIDVICNSGEVDFCINIFHEVCKLGLCPDINTYKILIP 326

Query: 88  TSLKVGRIDEAFKLLH 104
            + KVGRIDEAF+LL+
Sbjct: 327 ATSKVGRIDEAFRLLN 342

[Close]

BLAST of Clc06G09930 vs. ExPASy TrEMBL
Match: A0A1S3CJ74 (pentatricopeptide repeat-containing protein At5g18390, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103501022 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.5e-26
Identity = 60/76 (78.95%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 28  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIP 87
           AK++V+KM K   VPD+GTFNSLIDVICNSGEV FCINIFHEVCKLGLCPDINTYK  IP
Sbjct: 267 AKDMVRKMTKEGCVPDIGTFNSLIDVICNSGEVDFCINIFHEVCKLGLCPDINTYKILIP 326

Query: 88  TSLKVGRIDEAFKLLH 104
            + KVGRIDEAF+LL+
Sbjct: 327 ATSKVGRIDEAFRLLN 342

[Close]

BLAST of Clc06G09930 vs. TAIR 10
Match: AT5G18390.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 97.4 bits (241), Expect = 6.9e-21
Identity = 45/76 (59.21%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 28  AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIP 87
           AK +V KM KG  VPD+ TFN LI+ I  SGEV FCI +++  CKLGLC DI+TYK  IP
Sbjct: 271 AKEMVSKMTKGGFVPDIQTFNILIEAISKSGEVEFCIEMYYTACKLGLCVDIDTYKTLIP 330

Query: 88  TSLKVGRIDEAFKLLH 104
              K+G+IDEAF+LL+
Sbjct: 331 AVSKIGKIDEAFRLLN 346

[Close]

BLAST of Clc06G09930 vs. TAIR 10
Match: AT1G05670.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-07
Identity = 26/68 (38.24%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 35  MIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGR 94
           MI+    P+V T+ +LID +C  G++     + HE+ K+GL P+I TY + +    K G 
Sbjct: 447 MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN 506

Query: 95  IDEAFKLL 103
           I+EA KL+
Sbjct: 507 IEEAVKLV 514

[Close]

BLAST of Clc06G09930 vs. TAIR 10
Match: AT1G05670.2 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-07
Identity = 26/68 (38.24%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 35  MIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPTSLKVGR 94
           MI+    P+V T+ +LID +C  G++     + HE+ K+GL P+I TY + +    K G 
Sbjct: 447 MIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGN 506

Query: 95  IDEAFKLL 103
           I+EA KL+
Sbjct: 507 IEEAVKLV 514

[Close]

BLAST of Clc06G09930 vs. TAIR 10
Match: AT1G63130.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 51.2 bits (121), Expect = 5.7e-07
Identity = 30/93 (32.26%), Postives = 49/93 (52.69%), Query Frame = 0


Query: 17  VTSGVETSSSC-------AKNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHE 76
           VT G+  +  C       A +++KKM +G   P V  +N++ID +CN   V   +N+F E
Sbjct: 222 VTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTE 281

Query: 77  VCKLGLCPDINTYKNSIPTSLKVGRIDEAFKLL 103
           +   G+ P++ TY + I      GR  +A +LL
Sbjct: 282 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLL 314

[Close]

BLAST of Clc06G09930 vs. TAIR 10
Match: AT2G02150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 51.2 bits (121), Expect = 5.7e-07
Identity = 27/69 (39.13%), Postives = 37/69 (53.62%), Query Frame = 0


Query: 29  KNIVKKMIKGASVPDVGTFNSLIDVICNSGEVYFCINIFHEVCKLGLCPDINTYKNSIPT 88
           K   K MI   + P V T+N +ID +C  G+V     +F E+   GL PD  TY + I  
Sbjct: 247 KRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDG 306

Query: 89  SLKVGRIDE 98
             KVGR+D+
Sbjct: 307 FGKVGRLDD 315

The following BLAST results are available for this feature:

BLAST of Clc06G09930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142520.1	2.1e-27	81.58	pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Cucumis sa...	[more]
XP_038879743.1	2.1e-27	81.58	pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Benincasa ...	[more]
KAG7023899.1	1.4e-26	80.26	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
XP_022151697.1	1.4e-26	80.26	pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Momordica ...	[more]
KAG6590295.1	1.4e-26	80.26	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]

BLAST of Clc06G09930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94JX6	9.8e-20	59.21	Pentatricopeptide repeat-containing protein At5g18390, mitochondrial OS=Arabidop...	[more]
Q0WVK7	1.6e-06	38.24	Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidop...	[more]
P0C894	8.0e-06	39.13	Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis th...	[more]
Q9CAN0	8.0e-06	32.26	Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidop...	[more]
Q9SI78	2.3e-05	33.78	Pentatricopeptide repeat-containing protein At1g62720 OS=Arabidopsis thaliana OX...	[more]

BLAST of Clc06G09930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M105	1.0e-27	81.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G695420 PE=4 SV=1	[more]
A0A6J1DE73	6.6e-27	80.26	pentatricopeptide repeat-containing protein At5g18390, mitochondrial OS=Momordic...	[more]
A0A6J1H8G8	6.6e-27	80.26	pentatricopeptide repeat-containing protein At5g18390, mitochondrial OS=Cucurbit...	[more]
A0A5A7V4T7	2.5e-26	78.95	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3CJ74	2.5e-26	78.95	pentatricopeptide repeat-containing protein At5g18390, mitochondrial OS=Cucumis ...	[more]

BLAST of Clc06G09930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18390.1	6.9e-21	59.21	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G05670.1	1.1e-07	38.24	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G05670.2	1.1e-07	38.24	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G63130.1	5.7e-07	32.26	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G02150.1	5.7e-07	39.13	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 46..79 e-value: 1.9E-4 score: 19.4
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 43..77 score: 9.415814
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 22..103 e-value: 9.6E-13 score: 50.2
None	No IPR available	PANTHER	PTHR45613	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 27..103
None	No IPR available	PANTHER	PTHR45613:SF30	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL	coord: 27..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G09930.1	Clc06G09930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding