Clc06G09630 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGATGGGAATCGGTGCAATGCTTGACGTGGCCGATGAAGAGAATTCTGCATCAGTTGGAGTTGATGGAGCTCATATAGAATTTATTGAATCCTCGAACGAATGGACCAAGTTCAGGGATGACTTGGCGGTCGAAATTTTTACTCAATGGCAGGGAGCCTGATTATTCGATGTTGATTACCTTTTGTTTATTTTACTACTGAATGCAATTTAATTATGGAATATTCGAAGTATGTTGTGAAAATGTGTTGTGTCAAGACTCTGTGTGAACAATTTAAATTGGAACATATAATTTCAAACATCCTTTGATTGTGCAAGTGTTTAATTTATAGCATCTTTTCATTGAACAAACGTATGCATACAGTGTAATGGCAGGTAATAGTAGGAGGTCTAAACACGTATGGTCGAAGGTGGAGGATACCAAGTTGGTGGAAGCCCTATTGTATTTGGTGGAGACCGGTTGGAGGTTCGACAATGGGACGTTTCGACCAGGATACTTACAGCACTTGGAGCGAATTTTGCATGAGAAAGTGCCTGGGTGCACCTTGAATCAAAACACCATTGAGTGCAAGGTGAGAAGTATAAAGAAACAATACAATGCAGTATCATAGATGTTAGGTCAGTTGGGGTTCAACTAGAATGAGGAGTTCAAATGTGTCCAGGTCGAGAGGGAGATTTTCGATCTTTGGGTTCGGGTAAGATTCTAGAAAAAAATTTACCAGTACGTGTTAAATAGGTAAATATTAATAATGTGTACATTTATTAATGCAGATTCATCCCAGTGCGAAGGGGATATGGAACAAAACATTTCCCCATTACGATGACCTCTCCACCGTATTTGGGAAAGATATAACAGTAGGATAA ATGGAGATGGGAATCGGTGCAATGCTTGACGTGGCCGATGAAGAGAATTCTGCATCAGTTGGAGTTGATGGAGCTCATATAGAATTTATTGAATCCTCGAACGAATGGACCAAGTTCAGGGATGACTTGGCGCATCTTTTCATTGAACAAACGTATGCATACAGTGTAATGGCAGGTAATAGTAGGAGGTCTAAACACGTATGGTCGAAGGTGGAGGATACCAAGTTGGTGGAAGCCCTATTGTATTTGGTGGAGACCGGTTGGAGGTTCGACAATGGGACGTTTCGACCAGGATACTTACAGCACTTGGAGCGAATTTTGCATGAGAAAGTGCCTGGGTGCACCTTGAATCAAAACACCATTGAGTGCAAGGTCGAGAGGGAGATTTTCGATCTTTGGGTTCGGATTCATCCCAGTGCGAAGGGGATATGGAACAAAACATTTCCCCATTACGATGACCTCTCCACCGTATTTGGGAAAGATATAACAGTAGGATAA ATGGAGATGGGAATCGGTGCAATGCTTGACGTGGCCGATGAAGAGAATTCTGCATCAGTTGGAGTTGATGGAGCTCATATAGAATTTATTGAATCCTCGAACGAATGGACCAAGTTCAGGGATGACTTGGCGCATCTTTTCATTGAACAAACGTATGCATACAGTGTAATGGCAGGTAATAGTAGGAGGTCTAAACACGTATGGTCGAAGGTGGAGGATACCAAGTTGGTGGAAGCCCTATTGTATTTGGTGGAGACCGGTTGGAGGTTCGACAATGGGACGTTTCGACCAGGATACTTACAGCACTTGGAGCGAATTTTGCATGAGAAAGTGCCTGGGTGCACCTTGAATCAAAACACCATTGAGTGCAAGGTCGAGAGGGAGATTTTCGATCTTTGGGTTCGGATTCATCCCAGTGCGAAGGGGATATGGAACAAAACATTTCCCCATTACGATGACCTCTCCACCGTATTTGGGAAAGATATAACAGTAGGATAA MEMGIGAMLDVADEENSASVGVDGAHIEFIESSNEWTKFRDDLAHLFIEQTYAYSVMAGNSRRSKHVWSKVEDTKLVEALLYLVETGWRFDNGTFRPGYLQHLERILHEKVPGCTLNQNTIECKVEREIFDLWVRIHPSAKGIWNKTFPHYDDLSTVFGKDITVG Homology
BLAST of Clc06G09630 vs. NCBI nr
Match: XP_038892629.1 (uncharacterized protein At2g29880-like [Benincasa hispida]) HSP 1 Score: 254.6 bits (649), Expect = 5.8e-64 Identity = 127/193 (65.80%), Postives = 136/193 (70.47%), Query Frame = 0
BLAST of Clc06G09630 vs. NCBI nr
Match: XP_038902479.1 (uncharacterized protein At2g29880-like [Benincasa hispida]) HSP 1 Score: 194.9 bits (494), Expect = 5.5e-46 Identity = 93/139 (66.91%), Postives = 97/139 (69.78%), Query Frame = 0
BLAST of Clc06G09630 vs. NCBI nr
Match: XP_038895773.1 (uncharacterized protein LOC120083935 [Benincasa hispida]) HSP 1 Score: 193.4 bits (490), Expect = 1.6e-45 Identity = 106/194 (54.64%), Postives = 112/194 (57.73%), Query Frame = 0
BLAST of Clc06G09630 vs. NCBI nr
Match: XP_038887234.1 (uncharacterized protein LOC120077425 [Benincasa hispida]) HSP 1 Score: 193.0 bits (489), Expect = 2.1e-45 Identity = 91/135 (67.41%), Postives = 97/135 (71.85%), Query Frame = 0
BLAST of Clc06G09630 vs. NCBI nr
Match: XP_038896380.1 (uncharacterized protein LOC120084641 [Benincasa hispida]) HSP 1 Score: 187.2 bits (474), Expect = 1.1e-43 Identity = 91/135 (67.41%), Postives = 98/135 (72.59%), Query Frame = 0
BLAST of Clc06G09630 vs. ExPASy TrEMBL
Match: A0A5A7SXX8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00320 PE=3 SV=1) HSP 1 Score: 138.7 bits (348), Expect = 2.3e-29 Identity = 75/172 (43.60%), Postives = 100/172 (58.14%), Query Frame = 0
BLAST of Clc06G09630 vs. ExPASy TrEMBL
Match: E5GCB5 (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1) HSP 1 Score: 132.9 bits (333), Expect = 1.2e-27 Identity = 73/189 (38.62%), Postives = 100/189 (52.91%), Query Frame = 0
BLAST of Clc06G09630 vs. ExPASy TrEMBL
Match: A0A5A7T091 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9475G00160 PE=4 SV=1) HSP 1 Score: 132.5 bits (332), Expect = 1.6e-27 Identity = 72/193 (37.31%), Postives = 106/193 (54.92%), Query Frame = 0
BLAST of Clc06G09630 vs. ExPASy TrEMBL
Match: A0A5A7TJS2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00710 PE=4 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 2.1e-27 Identity = 72/194 (37.11%), Postives = 103/194 (53.09%), Query Frame = 0
BLAST of Clc06G09630 vs. ExPASy TrEMBL
Match: A0A5D3BRF0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G001260 PE=4 SV=1) HSP 1 Score: 131.7 bits (330), Expect = 2.8e-27 Identity = 79/195 (40.51%), Postives = 105/195 (53.85%), Query Frame = 0
BLAST of Clc06G09630 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). ) HSP 1 Score: 43.9 bits (102), Expect = 1.5e-04 Identity = 37/152 (24.34%), Postives = 63/152 (41.45%), Query Frame = 0
BLAST of Clc06G09630 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 43.9 bits (102), Expect = 1.5e-04 Identity = 37/152 (24.34%), Postives = 63/152 (41.45%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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