Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATATGAACACACTAGCGGCCGACTGCATTGTCATATGCTGTTGCTGCCAATGCTTGGCGTTGCAGATCATTCTCCTTTTGTTACTCAAGCTTCCATGGAAACTCGTTCGAAAGACGAGAGAATTTGCGAAGAGAAGGCTAAGAATGAGAGAAAAAGAGGAAAAGATGGTAGGGAAAGAAAAGGGTGGTAAGAGAGATGAGCTTAAAGGAAATAGTAAGGGAAGATGTATGAGAAGTGAAGAAAATGAGTTGGGGTTGAGTTGTTGTATCGAAGAGATTGAGAAGGTTATGCAAGATTTGCATGAGAAGGGAGAGTTTGGCTTTGGAAGCTTTTGGGGAAATGGTGATTCAATTTCAGGTTCCTGCAGAGATGAACAGCAATTTAGTCCTACAAATGTACAATATCAATTAATTAAAGTAATTCCTTCTGCATGA
mRNA sequence
ATGGAAGATATGAACACACTAGCGGCCGACTGCATTGTCATATGCTGTTGCTGCCAATGCTTGGCGTTGCAGATCATTCTCCTTTTGTTACTCAAGCTTCCATGGAAACTCGTTCGAAAGACGAGAGAATTTGCGAAGAGAAGGCTAAGAATGAGAGAAAAAGAGGAAAAGATGGTAGGGAAAGAAAAGGGTGGTAAGAGAGATGAGCTTAAAGGAAATAGTAAGGGAAGATGTATGAGAAGTGAAGAAAATGAGTTGGGGTTGAGTTGTTGTATCGAAGAGATTGAGAAGGTTATGCAAGATTTGCATGAGAAGGGAGAGTTTGGCTTTGGAAGCTTTTGGGGAAATGGTGATTCAATTTCAGGTTCCTGCAGAGATGAACAGCAATTTAGTCCTACAAATGTACAATATCAATTAATTAAAGTAATTCCTTCTGCATGA
Coding sequence (CDS)
ATGGAAGATATGAACACACTAGCGGCCGACTGCATTGTCATATGCTGTTGCTGCCAATGCTTGGCGTTGCAGATCATTCTCCTTTTGTTACTCAAGCTTCCATGGAAACTCGTTCGAAAGACGAGAGAATTTGCGAAGAGAAGGCTAAGAATGAGAGAAAAAGAGGAAAAGATGGTAGGGAAAGAAAAGGGTGGTAAGAGAGATGAGCTTAAAGGAAATAGTAAGGGAAGATGTATGAGAAGTGAAGAAAATGAGTTGGGGTTGAGTTGTTGTATCGAAGAGATTGAGAAGGTTATGCAAGATTTGCATGAGAAGGGAGAGTTTGGCTTTGGAAGCTTTTGGGGAAATGGTGATTCAATTTCAGGTTCCTGCAGAGATGAACAGCAATTTAGTCCTACAAATGTACAATATCAATTAATTAAAGTAATTCCTTCTGCATGA
Protein sequence
MEDMNTLAADCIVICCCCQCLALQIILLLLLKLPWKLVRKTREFAKRRLRMREKEEKMVGKEKGGKRDELKGNSKGRCMRSEENELGLSCCIEEIEKVMQDLHEKGEFGFGSFWGNGDSISGSCRDEQQFSPTNVQYQLIKVIPSA
Homology
BLAST of Clc06G08900 vs. NCBI nr
Match:
XP_038874336.1 (uncharacterized protein LOC120067034 [Benincasa hispida])
HSP 1 Score: 248.8 bits (634), Expect = 2.8e-62
Identity = 131/146 (89.73%), Postives = 138/146 (94.52%), Query Frame = 0
Query: 1 MEDMNTLAADCIVICCCCQCLALQIILLLLLKLPWKLVRKTREFAKRRLRMREKEEKMVG 60
MED NTLAADCIVICCCCQCLALQI+LLLLLKLPWKLVRKTREFAKRRLRMREKEEKMVG
Sbjct: 1 MEDTNTLAADCIVICCCCQCLALQIVLLLLLKLPWKLVRKTREFAKRRLRMREKEEKMVG 60
Query: 61 KEKGGK-RDELKGNSKGRCMRSEENELGLSCCIEEIEKVMQDLHEKGEFGFGSFWGNGDS 120
KEKG RD+LKG S GRCMRSEEN LGLS C+EEIEKVMQDLHEKGEFGFGSFWG+G+S
Sbjct: 61 KEKGSDYRDKLKGISNGRCMRSEENGLGLS-CMEEIEKVMQDLHEKGEFGFGSFWGHGNS 120
Query: 121 ISGSCRDEQQFSPTNVQYQLIKVIPS 146
ISGSCRDEQQ+SPTNVQYQLI+VIPS
Sbjct: 121 ISGSCRDEQQYSPTNVQYQLIQVIPS 145
BLAST of Clc06G08900 vs. NCBI nr
Match:
XP_008457185.1 (PREDICTED: uncharacterized protein LOC103496924 [Cucumis melo] >KAA0039665.1 uncharacterized protein E6C27_scaffold744G001560 [Cucumis melo var. makuwa] >TYJ95549.1 uncharacterized protein E5676_scaffold767G00440 [Cucumis melo var. makuwa])
HSP 1 Score: 231.1 bits (588), Expect = 6.1e-57
Identity = 123/145 (84.83%), Postives = 131/145 (90.34%), Query Frame = 0
Query: 1 MEDMNTLAADCIVICCCCQCLALQIILLLLLKLPWKLVRKTREFAKRRLRMREKEEKMVG 60
MED NTLAADCIVICCCCQCLALQIILLLLLKLP KLVRKTREFAK+RL MREKEEKMVG
Sbjct: 1 MEDTNTLAADCIVICCCCQCLALQIILLLLLKLPCKLVRKTREFAKKRLGMREKEEKMVG 60
Query: 61 KEKGGKRDELKGNSKGRCMRSEENELGLSCCIEEIEKVMQDLHEKGEFGFGSFWGNGDSI 120
KEKG +EL+G S G CMR+EE LGLSCC+EEIEKVMQDLHEKGEFGFGSFWGNG++
Sbjct: 61 KEKGCCGNELRGISNGSCMRNEEKGLGLSCCMEEIEKVMQDLHEKGEFGFGSFWGNGNTR 120
Query: 121 SGSCRDEQQFSPTNVQYQLIKVIPS 146
SGSCRDE FSPTNVQYQLI+VIPS
Sbjct: 121 SGSCRDE-LFSPTNVQYQLIQVIPS 144
BLAST of Clc06G08900 vs. NCBI nr
Match:
XP_011649060.1 (uncharacterized protein LOC105434576 [Cucumis sativus] >KGN61402.1 hypothetical protein Csa_006177 [Cucumis sativus])
HSP 1 Score: 230.7 bits (587), Expect = 8.0e-57
Identity = 121/145 (83.45%), Postives = 132/145 (91.03%), Query Frame = 0
Query: 1 MEDMNTLAADCIVICCCCQCLALQIILLLLLKLPWKLVRKTREFAKRRLRMREKEEKMVG 60
MED NTLAADCIVICCCCQCLALQIILLL LKLPWKLVRKTREFAK+RLR+REKEEKMVG
Sbjct: 1 MEDANTLAADCIVICCCCQCLALQIILLLFLKLPWKLVRKTREFAKKRLRLREKEEKMVG 60
Query: 61 KEKGGKRDELKGNSKGRCMRSEENELGLSCCIEEIEKVMQDLHEKGEFGFGSFWGNGDSI 120
KEK G +E++G S G CMR+EE LGLSCC+EEIEKVMQDLHEKGEFGFGSFWGNG++
Sbjct: 61 KEK-GCGNEVRGISNGSCMRNEEKGLGLSCCMEEIEKVMQDLHEKGEFGFGSFWGNGNTS 120
Query: 121 SGSCRDEQQFSPTNVQYQLIKVIPS 146
SGSCRD+ FSPTNVQYQLI+VIPS
Sbjct: 121 SGSCRDD-LFSPTNVQYQLIQVIPS 143
BLAST of Clc06G08900 vs. NCBI nr
Match:
KAG7017145.1 (hypothetical protein SDJN02_22257, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 223.0 bits (567), Expect = 1.7e-54
Identity = 116/146 (79.45%), Postives = 130/146 (89.04%), Query Frame = 0
Query: 1 MEDMNTLAADCIVICCCCQCLALQIILLLLLKLPWKLVRKTREFAKRRLRMREKEEKMVG 60
MEDMNTLAADCIVICCCCQCLAL I+LLLLLKLP KLVRKTR+FAKRRLRMREKEEKMV
Sbjct: 1 MEDMNTLAADCIVICCCCQCLALHILLLLLLKLPCKLVRKTRDFAKRRLRMREKEEKMV- 60
Query: 61 KEKGGKRDELKGNSKGRCMRSEENELGLSCCIEEIEKVMQDLHEKGEFGFGSFWG-NGDS 120
DE++G+S G CMRSEE+ LGLSCC+EEIE+VMQDLHEKGEFGFGSFWG G+S
Sbjct: 61 -----MEDEVRGSSNGSCMRSEEDGLGLSCCMEEIERVMQDLHEKGEFGFGSFWGRKGNS 120
Query: 121 ISGSCRDEQQFSPTNVQYQLIKVIPS 146
+SGSCRDE+ F+PT+VQYQLI+VIPS
Sbjct: 121 VSGSCRDEEPFNPTDVQYQLIQVIPS 140
BLAST of Clc06G08900 vs. NCBI nr
Match:
XP_022928895.1 (uncharacterized protein LOC111435666 [Cucurbita moschata])
HSP 1 Score: 221.1 bits (562), Expect = 6.3e-54
Identity = 116/146 (79.45%), Postives = 128/146 (87.67%), Query Frame = 0
Query: 1 MEDMNTLAADCIVICCCCQCLALQIILLLLLKLPWKLVRKTREFAKRRLRMREKEEKMVG 60
MEDMNTLAADCIVICCCCQCLAL I+LLLLLKLP KLVRKTR+FAKRRLRMREKEEKMV
Sbjct: 1 MEDMNTLAADCIVICCCCQCLALHILLLLLLKLPCKLVRKTRDFAKRRLRMREKEEKMV- 60
Query: 61 KEKGGKRDELKGNSKGRCMRSEENELGLSCCIEEIEKVMQDLHEKGEFGFGSFWG-NGDS 120
DE++G S G CMRSEE+ LGLSCC+EEIE+VMQDLHEKGEFGFGSFWG G+S
Sbjct: 61 -----MEDEVRGISNGSCMRSEEDGLGLSCCMEEIERVMQDLHEKGEFGFGSFWGRKGNS 120
Query: 121 ISGSCRDEQQFSPTNVQYQLIKVIPS 146
+SGSCRDE+ F PT+VQYQLI+VIPS
Sbjct: 121 VSGSCRDEEPFDPTDVQYQLIQVIPS 140
BLAST of Clc06G08900 vs. ExPASy TrEMBL
Match:
A0A5D3B961 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00440 PE=4 SV=1)
HSP 1 Score: 231.1 bits (588), Expect = 3.0e-57
Identity = 123/145 (84.83%), Postives = 131/145 (90.34%), Query Frame = 0
Query: 1 MEDMNTLAADCIVICCCCQCLALQIILLLLLKLPWKLVRKTREFAKRRLRMREKEEKMVG 60
MED NTLAADCIVICCCCQCLALQIILLLLLKLP KLVRKTREFAK+RL MREKEEKMVG
Sbjct: 1 MEDTNTLAADCIVICCCCQCLALQIILLLLLKLPCKLVRKTREFAKKRLGMREKEEKMVG 60
Query: 61 KEKGGKRDELKGNSKGRCMRSEENELGLSCCIEEIEKVMQDLHEKGEFGFGSFWGNGDSI 120
KEKG +EL+G S G CMR+EE LGLSCC+EEIEKVMQDLHEKGEFGFGSFWGNG++
Sbjct: 61 KEKGCCGNELRGISNGSCMRNEEKGLGLSCCMEEIEKVMQDLHEKGEFGFGSFWGNGNTR 120
Query: 121 SGSCRDEQQFSPTNVQYQLIKVIPS 146
SGSCRDE FSPTNVQYQLI+VIPS
Sbjct: 121 SGSCRDE-LFSPTNVQYQLIQVIPS 144
BLAST of Clc06G08900 vs. ExPASy TrEMBL
Match:
A0A1S3C4I0 (uncharacterized protein LOC103496924 OS=Cucumis melo OX=3656 GN=LOC103496924 PE=4 SV=1)
HSP 1 Score: 231.1 bits (588), Expect = 3.0e-57
Identity = 123/145 (84.83%), Postives = 131/145 (90.34%), Query Frame = 0
Query: 1 MEDMNTLAADCIVICCCCQCLALQIILLLLLKLPWKLVRKTREFAKRRLRMREKEEKMVG 60
MED NTLAADCIVICCCCQCLALQIILLLLLKLP KLVRKTREFAK+RL MREKEEKMVG
Sbjct: 1 MEDTNTLAADCIVICCCCQCLALQIILLLLLKLPCKLVRKTREFAKKRLGMREKEEKMVG 60
Query: 61 KEKGGKRDELKGNSKGRCMRSEENELGLSCCIEEIEKVMQDLHEKGEFGFGSFWGNGDSI 120
KEKG +EL+G S G CMR+EE LGLSCC+EEIEKVMQDLHEKGEFGFGSFWGNG++
Sbjct: 61 KEKGCCGNELRGISNGSCMRNEEKGLGLSCCMEEIEKVMQDLHEKGEFGFGSFWGNGNTR 120
Query: 121 SGSCRDEQQFSPTNVQYQLIKVIPS 146
SGSCRDE FSPTNVQYQLI+VIPS
Sbjct: 121 SGSCRDE-LFSPTNVQYQLIQVIPS 144
BLAST of Clc06G08900 vs. ExPASy TrEMBL
Match:
A0A0A0LKX5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G116260 PE=4 SV=1)
HSP 1 Score: 230.7 bits (587), Expect = 3.9e-57
Identity = 121/145 (83.45%), Postives = 132/145 (91.03%), Query Frame = 0
Query: 1 MEDMNTLAADCIVICCCCQCLALQIILLLLLKLPWKLVRKTREFAKRRLRMREKEEKMVG 60
MED NTLAADCIVICCCCQCLALQIILLL LKLPWKLVRKTREFAK+RLR+REKEEKMVG
Sbjct: 1 MEDANTLAADCIVICCCCQCLALQIILLLFLKLPWKLVRKTREFAKKRLRLREKEEKMVG 60
Query: 61 KEKGGKRDELKGNSKGRCMRSEENELGLSCCIEEIEKVMQDLHEKGEFGFGSFWGNGDSI 120
KEK G +E++G S G CMR+EE LGLSCC+EEIEKVMQDLHEKGEFGFGSFWGNG++
Sbjct: 61 KEK-GCGNEVRGISNGSCMRNEEKGLGLSCCMEEIEKVMQDLHEKGEFGFGSFWGNGNTS 120
Query: 121 SGSCRDEQQFSPTNVQYQLIKVIPS 146
SGSCRD+ FSPTNVQYQLI+VIPS
Sbjct: 121 SGSCRDD-LFSPTNVQYQLIQVIPS 143
BLAST of Clc06G08900 vs. ExPASy TrEMBL
Match:
A0A6J1ESS6 (uncharacterized protein LOC111435666 OS=Cucurbita moschata OX=3662 GN=LOC111435666 PE=4 SV=1)
HSP 1 Score: 221.1 bits (562), Expect = 3.1e-54
Identity = 116/146 (79.45%), Postives = 128/146 (87.67%), Query Frame = 0
Query: 1 MEDMNTLAADCIVICCCCQCLALQIILLLLLKLPWKLVRKTREFAKRRLRMREKEEKMVG 60
MEDMNTLAADCIVICCCCQCLAL I+LLLLLKLP KLVRKTR+FAKRRLRMREKEEKMV
Sbjct: 1 MEDMNTLAADCIVICCCCQCLALHILLLLLLKLPCKLVRKTRDFAKRRLRMREKEEKMV- 60
Query: 61 KEKGGKRDELKGNSKGRCMRSEENELGLSCCIEEIEKVMQDLHEKGEFGFGSFWG-NGDS 120
DE++G S G CMRSEE+ LGLSCC+EEIE+VMQDLHEKGEFGFGSFWG G+S
Sbjct: 61 -----MEDEVRGISNGSCMRSEEDGLGLSCCMEEIERVMQDLHEKGEFGFGSFWGRKGNS 120
Query: 121 ISGSCRDEQQFSPTNVQYQLIKVIPS 146
+SGSCRDE+ F PT+VQYQLI+VIPS
Sbjct: 121 VSGSCRDEEPFDPTDVQYQLIQVIPS 140
BLAST of Clc06G08900 vs. ExPASy TrEMBL
Match:
A0A6J1HXD6 (uncharacterized protein LOC111468906 OS=Cucurbita maxima OX=3661 GN=LOC111468906 PE=4 SV=1)
HSP 1 Score: 219.2 bits (557), Expect = 1.2e-53
Identity = 114/143 (79.72%), Postives = 128/143 (89.51%), Query Frame = 0
Query: 1 MEDMNTLAADCIVICCCCQCLALQIILLLLLKLPWKLVRKTREFAKRRLRMREKEEKMVG 60
MEDMNTLAADCIVICCCCQCLAL I+LLLLLKLP KLVRKTR+FAKRRLRMREKEEKMV
Sbjct: 1 MEDMNTLAADCIVICCCCQCLALHILLLLLLKLPCKLVRKTRDFAKRRLRMREKEEKMV- 60
Query: 61 KEKGGKRDELKGNSKGRCMRSEENELGLSCCIEEIEKVMQDLHEKGEFGFGSFWG-NGDS 120
DE++G+S GRCMRSEE+ LGLSCC+EEIE+VMQDLHEKGEFGFGSFWG G+S
Sbjct: 61 -----MEDEVRGSSNGRCMRSEEDGLGLSCCMEEIERVMQDLHEKGEFGFGSFWGRKGNS 120
Query: 121 ISGSCRDEQQFSPTNVQYQLIKV 143
+SGSCRDE+ F+PT+VQYQLI+V
Sbjct: 121 VSGSCRDEEPFNPTHVQYQLIQV 137
BLAST of Clc06G08900 vs. TAIR 10
Match:
AT3G25597.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26140.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )
HSP 1 Score: 74.3 bits (181), Expect = 8.9e-14
Identity = 50/132 (37.88%), Postives = 72/132 (54.55%), Query Frame = 0
Query: 1 MEDMNTLAADCIVICCCCQCLALQIILLLLLKLPWKLVRKTRE-FAKRRLRMREKEEKMV 60
MED+N AADC+V+ CCC CL LQI + + L LP KLV+ TR+ + K + R K +
Sbjct: 1 MEDLNAFAADCVVVSCCCNCLVLQIAIFIFLGLPQKLVKNTRKCYTKWGINRRIKRMGLC 60
Query: 61 GKEKGGKRDELKGNSKGRCMRSEENELGLSCCIEEIEKVMQDLHEKGEFGFGSFWG---- 120
+ + + + + M E G CIEE+E+V+++ + GEF FGSFWG
Sbjct: 61 FECRENTEVDSEWRKESMMMSMEMEGFG---CIEEVEQVLEEFSKNGEFLFGSFWGQERV 120
Query: 121 -NGDSISGSCRD 127
N S+S D
Sbjct: 121 QNSSSMSNCGND 129
BLAST of Clc06G08900 vs. TAIR 10
Match:
AT1G26140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68700.1); Has 35 Blast hits to 35 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 64.7 bits (156), Expect = 7.1e-11
Identity = 43/119 (36.13%), Postives = 63/119 (52.94%), Query Frame = 0
Query: 2 EDMNTLAADCIVICCCCQCLALQIILLLLLKLPWKLVRKTREFAKRRLRMREKEEKMVGK 61
ED AADC+V+ CCCQCL LQ+ + + K+P KL +K ++F KR + GK
Sbjct: 47 EDCGAFAADCVVLSCCCQCLVLQVSVFIFFKIPRKLAKKMKKFVKR----------ICGK 106
Query: 62 EKGGKRDELKGNS-KGRCMRSEENELGLSCCIEEIEKVMQDLHEKGEFGFGSFWGNGDS 120
+++K G EE S C E+I++++Q+L F FGSFW + DS
Sbjct: 107 TLQPTMEDVKEEHWSGNGFPFEEGS-SRSICFEDIDRMLQELSMNKGFLFGSFWRHEDS 154
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038874336.1 | 2.8e-62 | 89.73 | uncharacterized protein LOC120067034 [Benincasa hispida] | [more] |
XP_008457185.1 | 6.1e-57 | 84.83 | PREDICTED: uncharacterized protein LOC103496924 [Cucumis melo] >KAA0039665.1 unc... | [more] |
XP_011649060.1 | 8.0e-57 | 83.45 | uncharacterized protein LOC105434576 [Cucumis sativus] >KGN61402.1 hypothetical ... | [more] |
KAG7017145.1 | 1.7e-54 | 79.45 | hypothetical protein SDJN02_22257, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_022928895.1 | 6.3e-54 | 79.45 | uncharacterized protein LOC111435666 [Cucurbita moschata] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3B961 | 3.0e-57 | 84.83 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3C4I0 | 3.0e-57 | 84.83 | uncharacterized protein LOC103496924 OS=Cucumis melo OX=3656 GN=LOC103496924 PE=... | [more] |
A0A0A0LKX5 | 3.9e-57 | 83.45 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G116260 PE=4 SV=1 | [more] |
A0A6J1ESS6 | 3.1e-54 | 79.45 | uncharacterized protein LOC111435666 OS=Cucurbita moschata OX=3662 GN=LOC1114356... | [more] |
A0A6J1HXD6 | 1.2e-53 | 79.72 | uncharacterized protein LOC111468906 OS=Cucurbita maxima OX=3661 GN=LOC111468906... | [more] |
Match Name | E-value | Identity | Description | |
AT3G25597.1 | 8.9e-14 | 37.88 | unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot... | [more] |
AT1G26140.1 | 7.1e-11 | 36.13 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |