Clc05G27490 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G27490
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	serine/arginine-rich splicing factor RSZ21
Location	ClcChr05: 34790004 .. 34793661 (+)
RNA-Seq Expression	Clc05G27490
Synteny	Clc05G27490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCTTCATCGACAACAAGAAAACCAAACTCACTCATCACTTGACTGATACCTTCTGCAGACTTTCCGAGCATCGGAGCTCTGCGACTACGGGCAGCGCCGTTTTCCTACCTTTTCACCGGCTGATCTCTTCGTACTTTTCAACGATCCGCGAGATCTTTATCTTGGTAGGCTTCAGCTTCTCGATCAATTTCAGCATAACCCTAATTCTTCCTCTTTTTTGAACGATGAATCCTTGAACTAGCGCTACGATTTTGTTTCTTCTTCCTCCATTTGTTATCACCTCTTTCAAATACTTCGTATGTGAACTTTTTTGTGTGTATTTTTACCCCCATGTGACCAATTTCGTGTCGCAGCTTCGCATCCTGGGGTTGGGAGGGTTGTATTATTCCCATCCCAATTTGTTGTGTAGATTAAATTCTAACTCCTCTCCGTTGTTTTTTTTTTTTTTTTTTTTTTTGGGGACGATTCGTTTTCTCAAACTAGCATATTTCCACGGATTGCTTACTCTTACTATTTTCAGGCGGTTCTTTGGCTCCTTCGCTACAATGACTCGAGTTTATATTGGTAATCTGGATCCACGCGTTACAGAGAGGGATCTTGAAGATGAATTTCGAATGTTCGGTGTTCTTAGGAGGTGATTTCTGTTTGATTTTTTTGTATCGAGGCATTAAATTTAGCATCTTTTAGACGCAAGATATTTAAAAATGTGTAAATTTTAGTCATTGGATTCTTTCATCGGCAGTCTGTTGGGAATCCTGGGATTTATATTCTACATTTACTTTTACTTCAACGCTTAATGTTTTGAGTTTATATTCATGGTTTCTTTCAGTATTACTCTTAGATTTTTTACAGCACTTTACTATTATTCATGGCGTTTTTACCTGGCCAAACCTAGACATTTCAGCACTCTGCAGGGGAAGAGAGACAGCAGAAAAAAGCCTTACTTTGTCTCTTTGAATGGCAGTACGTCTATTTTAAATCTGAGTACTATTCAAGTCCGGCTGGTTTCTGCCTGTAAGCAATGGGAGGTCACTGATTGGACTCTTGCTTTATGCATAAAATCATATCTCCCTTCTCGTTAGTTATTCATATTTGTTTGAGAACCTGAGACAGAGACTCTCTGAGATATGTCCTCTGAAGTTTGCTGATGGCTATCCTTGAGATTGGTGGGATCAACTCATCCAAATGCCAGAGTTGTATTTCTGTTGTCTGGATTTTGCTTCAAGGACATTTATGCCTTAATTGAAGTTAATTAGGACGAGATAGTTTCCAATGTGTATCCTCCATTTGCTATAATTTCAAATAACATTTCTGTTTCCTTGTTCCTTTGTATTAAAGTGCATACTGAAGCATTTGTTTTTTTAATAAAACATACAGTGTTTGGGTTGCTAGAAGGCCTCCAGGATATGCATTTATCGAGTTTGATGATCGCAGGGATGCTCTAGATGCAATACAAGCATTGGATGGTCAGTTTTAAATAGAAGATCTATGTTTTCTTTTTCTTTTTTCCCTGTAATATATCAATTGTGCATTTCATTCCTTCCATCAAATGATATTTACTTCTGTATATATGTGTGTGTGTGTGTGTGTGTATATGCTCGTGTGCACTTTTCTTGATTACTAGTGAAAATATGATCAACCAACTATCAGTAGGGGTTTTTCCTCAGCTTTCTGTCATCTAGTTTTCATTACCGCAGTGAATTAGAAATTTATTATTGATCTAGTCTAATATCAACTTGTATCCACTGAACTGAACTAAATCATGGAAATTTCGTAGATTCTTTAGATTTTACTTTATTCTTAGAAACCACCTTATTGAAAAAGAGTGTAATGAATGGGCCGGTCTCTCCAATATGCTTCAAAATGTGATTTTGGGGATCATCATGATTCTAAGATGTAGAAACTTGAGGTTATGAAGGCATTCTTCTAAATTATATTTTAATTTTGTCTTTGATATTAAGGGTGTTTGAACTGACTAGAGAAAAAAATGTTTTTCAAAAAAGTCATTTTTATTTAAACTCTTTGGATAGAAACGGTCGAAATTACACTGGCAATAAGCTTTAAACATGCTCCCTGAATCCTAGCCTCTTATTTATCTCCTAACTTGTGCATCTTGCGCAAGCATGATGAATTGAATCAATTTAATCTCTATTTCCAGACTTCCAGGTTTTTTTTTTTTTTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCACTGTTTTTGGCATCTCTTGGTGCTTCCACAAGTGTCATAAGTTGGTGGTCAAGTCTTTCCAAAGGTGAAGATAAACTGCTATGGAATAATTCAGATATTGCCATGTTATGAAGCATGATTTGAGAGACGTCAAATGAATTTTCAAGATGCTTTCTCTTCAGTGGAGGTCTTGTTGAACCTTGTTAAACTTTTCTTCTCTATGGCACACTAGATCAAATATTTTTCTATTGCAATTACAGTCTATCCTTCATCCAAGCCAATTGGGATCCTTTTCTGTTTCTTCCTAGGACTTATAGGGCGATTCCTTATCTCCCTGTTCTTAGTTCTATTGCCTTGAGTTAAGGCTATCTTTTTATTTTATTTGTGATTTTATTGGGATCCTTTTATAGGGAAAAATGGTTGGCGCGTGGAGCTTTCTCACAACTCTAAAGGTGGTGGAGGAGGTGGTGGTCGTCGTGGCCGTGGTGGTGGTGATGATTTGAAATGTTATGAATGTGGTGAGCCTGGTCATTTTGCTCGTGAGTGTCGTTCACGTGGGGGCTCACGAGGGGTAGGAGGTGGTTTACGTCGTAGTCCTTCTCCTCGGCGTCGTCGGAGTCCAAGCTATGAAAGATATGGCCGCAGGTGTGCTAAAGCTTTGTGTTTTTTTAAGCACACCAAACTATCTAAGTGATGTCAAATCAACAGGTGGTTTGGTTTTATATATAGTTTAGGCCTTGATGTTCTATCACTTTTTTCCCTTTTCTTGTGTAGGAGTAACAGTCCTCGTGGTAAAAGATCCCCACGACGTCGCAGCATTACACCTCCTAAGCGTGGTCGGAGCTACAGCAGATCTCCTCCATACCGCCATGCCCGTCGTGCTTCACCTTATGCTAATGGGTATGCCTTACTTCTCTTAGTCATGAGAACTATTCTCTAAAACTATTTAGTTAGTGAGAGGGGAGAACTTAATTGCCTTACTTAGGTTGTTTTGTGCACATGGGTGATGGGCCTTGGGTAATCATTGGGAATTAGTGCAGTAGAACACGGCCATCCTGAACGGCACTGCCACTGGCGCTTTTGAAGTCTGATTCCAGGCCATCACTAATATTTTCTCCCTTAACTAACTAGGCATTTCTTAACCGTTTTACCCCTCCCGGCATATGTCTTCATTATTGGAGGCCTATAACGTTTGTACAAATGAGCAGTAAATGATACTCTACTACAAATTCTTGTCAATACATACTTGATTGAGCAATATATTCCAAACTTCTCTTTCTGGATACAAGTACATCGATCTGAGAGTTGCATGTTAATCATTATTGCAGAGATTGATGCTGGAATCAAGGCTGGATGCTGTTCTGGTAGAACTTAGATGATGGTGTTTCTGCTATACTGTAGTTCTAATAGGAATTGTGGAGTGAACCGGAACCATGTAGTTAAGTTCATCTGA

mRNA sequence

ATGGCTGCCTTCATCGACAACAAGAAAACCAAACTCACTCATCACTTGACTGATACCTTCTGCAGACTTTCCGAGCATCGGAGCTCTGCGACTACGGGCAGCGCCGTTTTCCTACCTTTTCACCGGCTGATCTCTTCGCGGTTCTTTGGCTCCTTCGCTACAATGACTCGAGTTTATATTGGTAATCTGGATCCACGCGTTACAGAGAGGGATCTTGAAGATGAATTTCGAATGTTCGGTGTTCTTAGGAGTGTTTGGGTTGCTAGAAGGCCTCCAGGATATGCATTTATCGAGTTTGATGATCGCAGGGATGCTCTAGATGCAATACAAGCATTGGATGGGAAAAATGGTTGGCGCGTGGAGCTTTCTCACAACTCTAAAGGTGGTGGAGGAGGTGGTGGTCGTCGTGGCCGTGGTGGTGGTGATGATTTGAAATGTTATGAATGTGGTGAGCCTGGTCATTTTGCTCGTGAGTGTCGTTCACGTGGGGGCTCACGAGGGGTAGGAGGTGGTTTACGTCGTAGTCCTTCTCCTCGGCGTCGTCGGAGTCCAAGCTATGAAAGATATGGCCGCAGGAGTAACAGTCCTCGTGGTAAAAGATCCCCACGACGTCGCAGCATTACACCTCCTAAGCGTGGTCGGAGCTACAGCAGATCTCCTCCATACCGCCATGCCCGTCGTGCTTCACCTTATGCTAATGGTTCTAATAGGAATTGTGGAGTGAACCGGAACCATGTAGTTAAGTTCATCTGA

Coding sequence (CDS)

ATGGCTGCCTTCATCGACAACAAGAAAACCAAACTCACTCATCACTTGACTGATACCTTCTGCAGACTTTCCGAGCATCGGAGCTCTGCGACTACGGGCAGCGCCGTTTTCCTACCTTTTCACCGGCTGATCTCTTCGCGGTTCTTTGGCTCCTTCGCTACAATGACTCGAGTTTATATTGGTAATCTGGATCCACGCGTTACAGAGAGGGATCTTGAAGATGAATTTCGAATGTTCGGTGTTCTTAGGAGTGTTTGGGTTGCTAGAAGGCCTCCAGGATATGCATTTATCGAGTTTGATGATCGCAGGGATGCTCTAGATGCAATACAAGCATTGGATGGGAAAAATGGTTGGCGCGTGGAGCTTTCTCACAACTCTAAAGGTGGTGGAGGAGGTGGTGGTCGTCGTGGCCGTGGTGGTGGTGATGATTTGAAATGTTATGAATGTGGTGAGCCTGGTCATTTTGCTCGTGAGTGTCGTTCACGTGGGGGCTCACGAGGGGTAGGAGGTGGTTTACGTCGTAGTCCTTCTCCTCGGCGTCGTCGGAGTCCAAGCTATGAAAGATATGGCCGCAGGAGTAACAGTCCTCGTGGTAAAAGATCCCCACGACGTCGCAGCATTACACCTCCTAAGCGTGGTCGGAGCTACAGCAGATCTCCTCCATACCGCCATGCCCGTCGTGCTTCACCTTATGCTAATGGTTCTAATAGGAATTGTGGAGTGAACCGGAACCATGTAGTTAAGTTCATCTGA

Protein sequence

MAAFIDNKKTKLTHHLTDTFCRLSEHRSSATTGSAVFLPFHRLISSRFFGSFATMTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRGGGDDLKCYECGEPGHFARECRSRGGSRGVGGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPYRHARRASPYANGSNRNCGVNRNHVVKFI

Homology

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BLAST of Clc05G27490 vs. NCBI nr
Match: XP_038892593.1 (serine/arginine-rich splicing factor RSZ21 [Benincasa hispida])

HSP 1 Score: 353.6 bits (906), Expect = 1.4e-93
Identity = 179/180 (99.44%), Postives = 179/180 (99.44%), Query Frame = 0


Query: 55  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 114
           MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG
Sbjct: 1   MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 115 KNGWRVELSHNSKGGGGGGGRRGRGGGDDLKCYECGEPGHFARECRSRGGSRGVGGGLRR 174
           KNGWRVELSHNSKGGGGGGGRRGRGGGDDLKCYECGEPGHFARECRSRGGSRGV GGLRR
Sbjct: 61  KNGWRVELSHNSKGGGGGGGRRGRGGGDDLKCYECGEPGHFARECRSRGGSRGV-GGLRR 120

Query: 175 SPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPYRHARRASPYANG 234
           SPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPYRHARRASPYANG
Sbjct: 121 SPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPYRHARRASPYANG 179

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BLAST of Clc05G27490 vs. NCBI nr
Match: XP_008446226.1 (PREDICTED: serine/arginine-rich splicing factor RSZ21 [Cucumis melo] >XP_008446227.1 PREDICTED: serine/arginine-rich splicing factor RSZ21 [Cucumis melo])

HSP 1 Score: 353.6 bits (906), Expect = 1.4e-93
Identity = 180/186 (96.77%), Postives = 180/186 (96.77%), Query Frame = 0


Query: 55  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 114
           MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG
Sbjct: 1   MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 115 KNGWRVELSHNSKGGGGGGGRRGR------GGGDDLKCYECGEPGHFARECRSRGGSRGV 174
           KNGWRVELSHNSKGGGGGGGRRGR      GGGDDLKCYECGEPGHFARECRSRGGSRGV
Sbjct: 61  KNGWRVELSHNSKGGGGGGGRRGRGAGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGV 120

Query: 175 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPYRHARRA 234
           GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPYRHARRA
Sbjct: 121 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPYRHARRA 180

[Close]

BLAST of Clc05G27490 vs. NCBI nr
Match: TYK15593.1 (serine/arginine-rich splicing factor RSZ21 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 353.6 bits (906), Expect = 1.4e-93
Identity = 180/186 (96.77%), Postives = 180/186 (96.77%), Query Frame = 0


Query: 55  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 114
           MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG
Sbjct: 1   MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 115 KNGWRVELSHNSKGGGGGGGRRGR------GGGDDLKCYECGEPGHFARECRSRGGSRGV 174
           KNGWRVELSHNSKGGGGGGGRRGR      GGGDDLKCYECGEPGHFARECRSRGGSRGV
Sbjct: 61  KNGWRVELSHNSKGGGGGGGRRGRGAGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGV 120

Query: 175 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPYRHARRA 234
           GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPYRHARRA
Sbjct: 121 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPYRHARRA 180

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BLAST of Clc05G27490 vs. NCBI nr
Match: XP_011655636.1 (serine/arginine-rich splicing factor RSZ21 [Cucumis sativus] >KAE8648723.1 hypothetical protein Csa_008378 [Cucumis sativus])

HSP 1 Score: 353.2 bits (905), Expect = 1.8e-93
Identity = 180/187 (96.26%), Postives = 180/187 (96.26%), Query Frame = 0


Query: 55  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 114
           MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG
Sbjct: 1   MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 115 KNGWRVELSHNSKGGGGGGGRRGR-------GGGDDLKCYECGEPGHFARECRSRGGSRG 174
           KNGWRVELSHNSKGGGGGGGRRGR       GGGDDLKCYECGEPGHFARECRSRGGSRG
Sbjct: 61  KNGWRVELSHNSKGGGGGGGRRGRGGGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRG 120

Query: 175 VGGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPYRHARR 234
           VGGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPYRHARR
Sbjct: 121 VGGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPYRHARR 180

[Close]

BLAST of Clc05G27490 vs. NCBI nr
Match: XP_022151054.1 (serine/arginine-rich splicing factor RSZ21 [Momordica charantia])

HSP 1 Score: 350.5 bits (898), Expect = 1.2e-92
Identity = 174/180 (96.67%), Postives = 177/180 (98.33%), Query Frame = 0


Query: 55  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 114
           MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG
Sbjct: 1   MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 115 KNGWRVELSHNSKGGGGGGGRRGRGGGDDLKCYECGEPGHFARECRSRGGSRGVGGGLRR 174
           KNGWRVELSHN+KG GGGGGRRGRGGGDDLKCYECGEPGHFARECRSRG SR +GGGLRR
Sbjct: 61  KNGWRVELSHNAKGSGGGGGRRGRGGGDDLKCYECGEPGHFARECRSRGASRSIGGGLRR 120

Query: 175 SPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPYRHARRASPYANG 234
           SPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPYRHARR+SPYANG
Sbjct: 121 SPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPYRHARRSSPYANG 180

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BLAST of Clc05G27490 vs. ExPASy Swiss-Prot
Match: O81127 (Serine/arginine-rich splicing factor RSZ21 OS=Arabidopsis thaliana OX=3702 GN=RSZ21 PE=1 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 2.6e-66
Identity = 142/193 (73.58%), Postives = 152/193 (78.76%), Query Frame = 0


Query: 55  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 114
           MTRVY+GNLDPRVTER+LEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD 
Sbjct: 1   MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60

Query: 115 KNGWRVELSHNSKGGGGGGGRRGRGGGDDLKCYECGEPGHFARECRSRGGSRGVGGGLRR 174
           KNGWRVELSH  KGG GGGG R RGG +D KCYECGE GHFARECR     RG G   RR
Sbjct: 61  KNGWRVELSHKDKGGRGGGGGR-RGGIEDSKCYECGELGHFARECR-----RGRGSVRRR 120

Query: 175 SPSPRRRRSPSYERYGRRSNSPRGKRS-PRRRSITPPKRGRSYSRSPPYRHAR------- 234
           SPSPRRRRSP Y  Y RRS SPRG+RS PRRRS+TPP+RGRSYSRSPPYR +R       
Sbjct: 121 SPSPRRRRSPDY-GYARRSISPRGRRSPPRRRSVTPPRRGRSYSRSPPYRGSRRDSPRRR 180

[Close]

BLAST of Clc05G27490 vs. ExPASy Swiss-Prot
Match: O81126 (Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis thaliana OX=3702 GN=RSZ22 PE=1 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 3.4e-58
Identity = 134/198 (67.68%), Postives = 148/198 (74.75%), Query Frame = 0


Query: 55  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 114
           M+RVY+GNLDPRVTER+LEDEFR FGV+RSVWVARRPPGYAF++F+D RDA DAI+ALDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60

Query: 115 KNGWRVELSHN-------SKGG--GGGGGRRGRGGGDDLKCYECGEPGHFARECRSRGGS 174
           KNGWRVE SHN        +GG  GGGGG RG  GG DLKCYECGE GHFARECR+RGG+
Sbjct: 61  KNGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFARECRNRGGT 120

Query: 175 RGVGGGLRRSPS-----PRRRRSPSYERYGRRSNSPRGKR--SPRRRSIT-PPKRGRSYS 234
                G RRS S     PR RRSPS   YGRRS SPR +    PRRRS + PP RGRSYS
Sbjct: 121 -----GRRRSKSRSRTPPRYRRSPS---YGRRSYSPRARSPPPPRRRSPSPPPARGRSYS 180

Query: 235 RSPPYRHARRASPYANGS 236
           RSPP   AR   PYANG+
Sbjct: 181 RSPPPYRAREEVPYANGN 190

[Close]

BLAST of Clc05G27490 vs. ExPASy Swiss-Prot
Match: Q9SJA6 (Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana OX=3702 GN=RSZ22A PE=1 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 4.4e-58
Identity = 128/192 (66.67%), Postives = 143/192 (74.48%), Query Frame = 0


Query: 55  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 114
           M+RVY+GNLDPRVTER+LEDEFR FGV+RSVWVARRPPGYAF++F+D RDA DAI+ +DG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60

Query: 115 KNGWRVELSHNSKGGGGGGGRRGRG------GGDDLKCYECGEPGHFARECRSRGGSRGV 174
           KNGWRVE SHN  GGGG GG RG G      GG DLKCYECGE GHFARECRSRGGS   
Sbjct: 61  KNGWRVEQSHNRGGGGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFARECRSRGGS--- 120

Query: 175 GGGLRRSPS-----PRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPYR 234
            GG RRS S     PR R+SP+Y   GRRS SPR +  P  R  +P  RGR+YSRSPP  
Sbjct: 121 -GGRRRSRSRSRSPPRYRKSPTYG--GRRSYSPRARSPPPPRRRSPSPRGRNYSRSPPPY 180

Query: 235 HARRASPYANGS 236
            AR   PYANG+
Sbjct: 181 RARDEVPYANGN 186

[Close]

BLAST of Clc05G27490 vs. ExPASy Swiss-Prot
Match: Q69KL9 (Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp. japonica OX=39947 GN=RSZ21A PE=2 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.1e-56
Identity = 127/188 (67.55%), Postives = 141/188 (75.00%), Query Frame = 0


Query: 55  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 114
           M RVY+GNLDPRVT R+LEDEFR+FGVLRSVWVAR+PPG+AFI+FDDRRDA DAI+ +DG
Sbjct: 1   MARVYVGNLDPRVTARELEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAQDAIRDIDG 60

Query: 115 KNGWRVELSHNSKGGGGGGGRRGRGGGDDLKCYECGEPGHFARECRSRGGSRGVGGGLRR 174
           KNGWRVELS N+  G GG   R R G  + KCYECGE GHFARECR R GS G+G G RR
Sbjct: 61  KNGWRVELSRNASSGRGG---RDRYGSSESKCYECGETGHFARECRLRIGSGGLGSGRRR 120

Query: 175 SPSPRRRRSPSYER---YGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPYRHARRASP- 234
           S S  R RSP Y R   YGRRS SP G RSPRRRS++ P R RSYSRSP Y   R  SP 
Sbjct: 121 SRSRSRSRSPRYRRSPSYGRRSYSPAG-RSPRRRSVS-PARARSYSRSPQYNRGRDESPA 180

Query: 235 YANGSNRN 239
           Y NG  R+
Sbjct: 181 YDNGYRRS 183

[Close]

BLAST of Clc05G27490 vs. ExPASy Swiss-Prot
Match: Q6K4N0 (Serine/arginine-rich splicing factor RSZ21 OS=Oryza sativa subsp. japonica OX=39947 GN=RSZP21 PE=2 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 4.6e-55
Identity = 122/183 (66.67%), Postives = 139/183 (75.96%), Query Frame = 0


Query: 55  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 114
           M R+Y+GNLDPRVT  +LEDEFR+FGVLRSVWVAR+PPG+AFI+FDD+RDA DA++ LDG
Sbjct: 1   MARLYVGNLDPRVTSGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDG 60

Query: 115 KNGWRVELSHNSKGGGGGGGRRGRGGGDDLKCYECGEPGHFARECRSRGGSRGVGGGLRR 174
           KNGWRVELS NS   GG    R R GG ++KCYECGE GHFARECR R G  G+G G RR
Sbjct: 61  KNGWRVELSRNSSSRGG----RDRHGGSEMKCYECGETGHFARECRLRIGPGGLGSGKRR 120

Query: 175 SPSPRRRRSPSYER---YGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPYRHARRASPY 234
           S S  R RSP Y +   YGRRS SPR  RSPRRRS++ P RGRSYSRSP     R  SPY
Sbjct: 121 SRSRSRSRSPQYRKSPTYGRRSYSPR-DRSPRRRSVS-PVRGRSYSRSP---RGRGGSPY 174

[Close]

BLAST of Clc05G27490 vs. ExPASy TrEMBL
Match: A0A1S3BEJ4 (serine/arginine-rich splicing factor RSZ21 OS=Cucumis melo OX=3656 GN=LOC103489020 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 6.8e-94
Identity = 180/186 (96.77%), Postives = 180/186 (96.77%), Query Frame = 0


Query: 55  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 114
           MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG
Sbjct: 1   MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 115 KNGWRVELSHNSKGGGGGGGRRGR------GGGDDLKCYECGEPGHFARECRSRGGSRGV 174
           KNGWRVELSHNSKGGGGGGGRRGR      GGGDDLKCYECGEPGHFARECRSRGGSRGV
Sbjct: 61  KNGWRVELSHNSKGGGGGGGRRGRGAGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGV 120

Query: 175 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPYRHARRA 234
           GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPYRHARRA
Sbjct: 121 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPYRHARRA 180

[Close]

BLAST of Clc05G27490 vs. ExPASy TrEMBL
Match: A0A5D3CUM7 (Serine/arginine-rich splicing factor RSZ21 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00890 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 6.8e-94
Identity = 180/186 (96.77%), Postives = 180/186 (96.77%), Query Frame = 0


Query: 55  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 114
           MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG
Sbjct: 1   MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 115 KNGWRVELSHNSKGGGGGGGRRGR------GGGDDLKCYECGEPGHFARECRSRGGSRGV 174
           KNGWRVELSHNSKGGGGGGGRRGR      GGGDDLKCYECGEPGHFARECRSRGGSRGV
Sbjct: 61  KNGWRVELSHNSKGGGGGGGRRGRGAGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGV 120

Query: 175 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPYRHARRA 234
           GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPYRHARRA
Sbjct: 121 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPYRHARRA 180

[Close]

BLAST of Clc05G27490 vs. ExPASy TrEMBL
Match: A0A6J1DBV4 (serine/arginine-rich splicing factor RSZ21 OS=Momordica charantia OX=3673 GN=LOC111019078 PE=4 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 5.7e-93
Identity = 174/180 (96.67%), Postives = 177/180 (98.33%), Query Frame = 0


Query: 55  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 114
           MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG
Sbjct: 1   MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 115 KNGWRVELSHNSKGGGGGGGRRGRGGGDDLKCYECGEPGHFARECRSRGGSRGVGGGLRR 174
           KNGWRVELSHN+KG GGGGGRRGRGGGDDLKCYECGEPGHFARECRSRG SR +GGGLRR
Sbjct: 61  KNGWRVELSHNAKGSGGGGGRRGRGGGDDLKCYECGEPGHFARECRSRGASRSIGGGLRR 120

Query: 175 SPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPYRHARRASPYANG 234
           SPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPYRHARR+SPYANG
Sbjct: 121 SPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPYRHARRSSPYANG 180

[Close]

BLAST of Clc05G27490 vs. ExPASy TrEMBL
Match: A0A6J1GX57 (serine/arginine-rich splicing factor RSZ21-like OS=Cucurbita moschata OX=3662 GN=LOC111458322 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 1.2e-90
Identity = 177/185 (95.68%), Postives = 178/185 (96.22%), Query Frame = 0


Query: 55  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 114
           MTRVYIGNLDPRVTER+LEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG
Sbjct: 1   MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 115 KNGWRVELSHNSKGGGGGGGRRGR----GGGDDLKCYECGEPGHFARECRSRGGSRGVGG 174
           KNGWRVELSHNSKGGGGGGGRRGR    GGGDDLKCYECGEPGHFARECRSRGGSRG GG
Sbjct: 61  KNGWRVELSHNSKGGGGGGGRRGRGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGAGG 120

Query: 175 GLRRSPSPRRRRSPSYERYGRRSNSPRGKRS-PRRRSITPPKRGRSYSRSPPYRHARRAS 234
           GLRRSPSPRRRRSPSYERYGRRSNSPRGKRS PRRRSITPPKRGRSYSRSPP RHARRAS
Sbjct: 121 GLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPPRRRSITPPKRGRSYSRSPPPRHARRAS 180

[Close]

BLAST of Clc05G27490 vs. ExPASy TrEMBL
Match: A0A6J1KZV2 (serine/arginine-rich splicing factor RSZ21-like OS=Cucurbita maxima OX=3661 GN=LOC111497790 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 2.0e-90
Identity = 177/187 (94.65%), Postives = 178/187 (95.19%), Query Frame = 0


Query: 55  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 114
           MTRVYIGNLDPRVTER+LEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG
Sbjct: 1   MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 115 KNGWRVELSHNSKGGGGGGGRRGR------GGGDDLKCYECGEPGHFARECRSRGGSRGV 174
           KNGWRVELSHNSKGGGGGGGRRGR      GGGDDLKCYECGEPGHFARECRSRGGSRG 
Sbjct: 61  KNGWRVELSHNSKGGGGGGGRRGRGGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGA 120

Query: 175 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRS-PRRRSITPPKRGRSYSRSPPYRHARR 234
           GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRS PRRRSITPPKRGRSYSRSPP RHARR
Sbjct: 121 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPPRRRSITPPKRGRSYSRSPPPRHARR 180

[Close]

BLAST of Clc05G27490 vs. TAIR 10
Match: AT1G23860.1 (RS-containing zinc finger protein 21 )

HSP 1 Score: 253.4 bits (646), Expect = 1.8e-67
Identity = 142/193 (73.58%), Postives = 152/193 (78.76%), Query Frame = 0


Query: 55  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 114
           MTRVY+GNLDPRVTER+LEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD 
Sbjct: 1   MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60

Query: 115 KNGWRVELSHNSKGGGGGGGRRGRGGGDDLKCYECGEPGHFARECRSRGGSRGVGGGLRR 174
           KNGWRVELSH  KGG GGGG R RGG +D KCYECGE GHFARECR     RG G   RR
Sbjct: 61  KNGWRVELSHKDKGGRGGGGGR-RGGIEDSKCYECGELGHFARECR-----RGRGSVRRR 120

Query: 175 SPSPRRRRSPSYERYGRRSNSPRGKRS-PRRRSITPPKRGRSYSRSPPYRHAR------- 234
           SPSPRRRRSP Y  Y RRS SPRG+RS PRRRS+TPP+RGRSYSRSPPYR +R       
Sbjct: 121 SPSPRRRRSPDY-GYARRSISPRGRRSPPRRRSVTPPRRGRSYSRSPPYRGSRRDSPRRR 180

[Close]

BLAST of Clc05G27490 vs. TAIR 10
Match: AT1G23860.2 (RS-containing zinc finger protein 21 )

HSP 1 Score: 253.4 bits (646), Expect = 1.8e-67
Identity = 142/193 (73.58%), Postives = 152/193 (78.76%), Query Frame = 0


Query: 55  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 114
           MTRVY+GNLDPRVTER+LEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD 
Sbjct: 1   MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60

Query: 115 KNGWRVELSHNSKGGGGGGGRRGRGGGDDLKCYECGEPGHFARECRSRGGSRGVGGGLRR 174
           KNGWRVELSH  KGG GGGG R RGG +D KCYECGE GHFARECR     RG G   RR
Sbjct: 61  KNGWRVELSHKDKGGRGGGGGR-RGGIEDSKCYECGELGHFARECR-----RGRGSVRRR 120

Query: 175 SPSPRRRRSPSYERYGRRSNSPRGKRS-PRRRSITPPKRGRSYSRSPPYRHAR------- 234
           SPSPRRRRSP Y  Y RRS SPRG+RS PRRRS+TPP+RGRSYSRSPPYR +R       
Sbjct: 121 SPSPRRRRSPDY-GYARRSISPRGRRSPPRRRSVTPPRRGRSYSRSPPYRGSRRDSPRRR 180

[Close]

BLAST of Clc05G27490 vs. TAIR 10
Match: AT1G23860.4 (RS-containing zinc finger protein 21 )

HSP 1 Score: 246.5 bits (628), Expect = 2.2e-65
Identity = 139/193 (72.02%), Postives = 149/193 (77.20%), Query Frame = 0


Query: 55  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 114
           MTRVY+GNLDPRVTER+LEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD 
Sbjct: 1   MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60

Query: 115 KNGWRVELSHNSKGGGGGGGRRGRGGGDDLKCYECGEPGHFARECRSRGGSRGVGGGLRR 174
           KNGWRVELSH  KGG GGGG R RGG +D KCYECGE GHFARECR     RG G   RR
Sbjct: 61  KNGWRVELSHKDKGGRGGGGGR-RGGIEDSKCYECGELGHFARECR-----RGRGSVRRR 120

Query: 175 SPSPRRRRSPSYERYGRRSNSPRGKRS-PRRRSITPPKRGRSYSRSPPYRHAR------- 234
           SPSPRRRRSP Y      S SPRG+RS PRRRS+TPP+RGRSYSRSPPYR +R       
Sbjct: 121 SPSPRRRRSPDY-----GSISPRGRRSPPRRRSVTPPRRGRSYSRSPPYRGSRRDSPRRR 180

[Close]

BLAST of Clc05G27490 vs. TAIR 10
Match: AT4G31580.1 (serine/arginine-rich 22 )

HSP 1 Score: 226.5 bits (576), Expect = 2.4e-59
Identity = 134/198 (67.68%), Postives = 148/198 (74.75%), Query Frame = 0


Query: 55  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 114
           M+RVY+GNLDPRVTER+LEDEFR FGV+RSVWVARRPPGYAF++F+D RDA DAI+ALDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60

Query: 115 KNGWRVELSHN-------SKGG--GGGGGRRGRGGGDDLKCYECGEPGHFARECRSRGGS 174
           KNGWRVE SHN        +GG  GGGGG RG  GG DLKCYECGE GHFARECR+RGG+
Sbjct: 61  KNGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFARECRNRGGT 120

Query: 175 RGVGGGLRRSPS-----PRRRRSPSYERYGRRSNSPRGKR--SPRRRSIT-PPKRGRSYS 234
                G RRS S     PR RRSPS   YGRRS SPR +    PRRRS + PP RGRSYS
Sbjct: 121 -----GRRRSKSRSRTPPRYRRSPS---YGRRSYSPRARSPPPPRRRSPSPPPARGRSYS 180

Query: 235 RSPPYRHARRASPYANGS 236
           RSPP   AR   PYANG+
Sbjct: 181 RSPPPYRAREEVPYANGN 190

[Close]

BLAST of Clc05G27490 vs. TAIR 10
Match: AT4G31580.2 (serine/arginine-rich 22 )

HSP 1 Score: 226.5 bits (576), Expect = 2.4e-59
Identity = 134/198 (67.68%), Postives = 148/198 (74.75%), Query Frame = 0


Query: 55  MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 114
           M+RVY+GNLDPRVTER+LEDEFR FGV+RSVWVARRPPGYAF++F+D RDA DAI+ALDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60

Query: 115 KNGWRVELSHN-------SKGG--GGGGGRRGRGGGDDLKCYECGEPGHFARECRSRGGS 174
           KNGWRVE SHN        +GG  GGGGG RG  GG DLKCYECGE GHFARECR+RGG+
Sbjct: 61  KNGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFARECRNRGGT 120

Query: 175 RGVGGGLRRSPS-----PRRRRSPSYERYGRRSNSPRGKR--SPRRRSIT-PPKRGRSYS 234
                G RRS S     PR RRSPS   YGRRS SPR +    PRRRS + PP RGRSYS
Sbjct: 121 -----GRRRSKSRSRTPPRYRRSPS---YGRRSYSPRARSPPPPRRRSPSPPPARGRSYS 180

Query: 235 RSPPYRHARRASPYANGS 236
           RSPP   AR   PYANG+
Sbjct: 181 RSPPPYRAREEVPYANGN 190

The following BLAST results are available for this feature:

BLAST of Clc05G27490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892593.1	1.4e-93	99.44	serine/arginine-rich splicing factor RSZ21 [Benincasa hispida]	[more]
XP_008446226.1	1.4e-93	96.77	PREDICTED: serine/arginine-rich splicing factor RSZ21 [Cucumis melo] >XP_0084462...	[more]
TYK15593.1	1.4e-93	96.77	serine/arginine-rich splicing factor RSZ21 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_011655636.1	1.8e-93	96.26	serine/arginine-rich splicing factor RSZ21 [Cucumis sativus] >KAE8648723.1 hypot...	[more]
XP_022151054.1	1.2e-92	96.67	serine/arginine-rich splicing factor RSZ21 [Momordica charantia]	[more]

BLAST of Clc05G27490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81127	2.6e-66	73.58	Serine/arginine-rich splicing factor RSZ21 OS=Arabidopsis thaliana OX=3702 GN=RS...	[more]
O81126	3.4e-58	67.68	Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis thaliana OX=3702 GN=RS...	[more]
Q9SJA6	4.4e-58	66.67	Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana OX=3702 GN=R...	[more]
Q69KL9	1.1e-56	67.55	Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp. japonica OX=3...	[more]
Q6K4N0	4.6e-55	66.67	Serine/arginine-rich splicing factor RSZ21 OS=Oryza sativa subsp. japonica OX=39...	[more]

BLAST of Clc05G27490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BEJ4	6.8e-94	96.77	serine/arginine-rich splicing factor RSZ21 OS=Cucumis melo OX=3656 GN=LOC1034890...	[more]
A0A5D3CUM7	6.8e-94	96.77	Serine/arginine-rich splicing factor RSZ21 isoform X1 OS=Cucumis melo var. makuw...	[more]
A0A6J1DBV4	5.7e-93	96.67	serine/arginine-rich splicing factor RSZ21 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1GX57	1.2e-90	95.68	serine/arginine-rich splicing factor RSZ21-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KZV2	2.0e-90	94.65	serine/arginine-rich splicing factor RSZ21-like OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Clc05G27490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G23860.1	1.8e-67	73.58	RS-containing zinc finger protein 21	[more]
AT1G23860.2	1.8e-67	73.58	RS-containing zinc finger protein 21	[more]
AT1G23860.4	2.2e-65	72.02	RS-containing zinc finger protein 21	[more]
AT4G31580.1	2.4e-59	67.68	serine/arginine-rich 22	[more]
AT4G31580.2	2.4e-59	67.68	serine/arginine-rich 22	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 145..161 e-value: 1.9E-5 score: 34.1
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 145..160 e-value: 1.2E-7 score: 31.5
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 145..161 score: 11.037273
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 57..123 e-value: 7.6E-18 score: 75.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 58..115 e-value: 3.8E-16 score: 58.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 56..127 score: 16.107859
None	No IPR available	GENE3D	4.10.60.10		coord: 143..209 e-value: 1.3E-6 score: 30.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 180..194
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 195..221
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..140
None	No IPR available	PANTHER	PTHR23147:SF164	SERINE/ARGININE-RICH SPLICING FACTOR RSZ21A-LIKE ISOFORM X1	coord: 46..233
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 46..233
None	No IPR available	CDD	cd12373	RRM_SRSF3_like	coord: 57..125 e-value: 2.30551E-36 score: 121.573
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 26..142 e-value: 1.2E-19 score: 72.6
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 54..140
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 138..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G27490.2	Clc05G27490.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding