Clc05G22580 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G22580
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	F-box protein GID2-like
Location	ClcChr05: 30816363 .. 30816908 (-)
RNA-Seq Expression	Clc05G22580
Synteny	Clc05G22580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCGAGTTGTTTCAGATGTGGATGGGGATGGGGATCGGAACATGGGGAAGAAACCTAGGGCGGATACCCATGATTGTGTCGGAGGAGAACACCCCTCCCACAAGACTGGATTTGTGAATTTGGATGATAATTTGCTGTTTGAGGTTTTCAAGCATGTGGATGCCAGAACTCTGGCCATGGCGGCGTGTGTGAGCAAGCAATGGCACAAAACCGCCGAAGATGAGCGGCTTTGGGAGCTGATCTGTACCAGGCACTGGGCCAACACCGGTTGCGGCAACCAACAGCTCCGATCTGTAGTTCTGGCCCTCGGTGGCTTCCGTCGCCTTCACTCCCTCTTCATCTGGCCTCTTACCAAACCCCAATCCTCCTCCTCCACATCTTCGTCGGCCTCCTCTTCCTCGTCTGCGTCTTGGTCTCCGTTTCCGGCGATGATTGGATCGAAGCCGCCAGCCCGGTGGGGGAAGGATGAGGTCCATCTCTCACTTTCCCTTCTCTCAATTCGTTACTACGAGAAGATGAATTTCAGCAACAGAGGCAGATGA

mRNA sequence

ATGAAGCGAGTTGTTTCAGATGTGGATGGGGATGGGGATCGGAACATGGGGAAGAAACCTAGGGCGGATACCCATGATTGTGTCGGAGGAGAACACCCCTCCCACAAGACTGGATTTGTGAATTTGGATGATAATTTGCTGTTTGAGGTTTTCAAGCATGTGGATGCCAGAACTCTGGCCATGGCGGCGTGTGTGAGCAAGCAATGGCACAAAACCGCCGAAGATGAGCGGCTTTGGGAGCTGATCTGTACCAGGCACTGGGCCAACACCGGTTGCGGCAACCAACAGCTCCGATCTGTAGTTCTGGCCCTCGGTGGCTTCCGTCGCCTTCACTCCCTCTTCATCTGGCCTCTTACCAAACCCCAATCCTCCTCCTCCACATCTTCGTCGGCCTCCTCTTCCTCGTCTGCGTCTTGGTCTCCGTTTCCGGCGATGATTGGATCGAAGCCGCCAGCCCGGTGGGGGAAGGATGAGGTCCATCTCTCACTTTCCCTTCTCTCAATTCGTTACTACGAGAAGATGAATTTCAGCAACAGAGGCAGATGA

Coding sequence (CDS)

ATGAAGCGAGTTGTTTCAGATGTGGATGGGGATGGGGATCGGAACATGGGGAAGAAACCTAGGGCGGATACCCATGATTGTGTCGGAGGAGAACACCCCTCCCACAAGACTGGATTTGTGAATTTGGATGATAATTTGCTGTTTGAGGTTTTCAAGCATGTGGATGCCAGAACTCTGGCCATGGCGGCGTGTGTGAGCAAGCAATGGCACAAAACCGCCGAAGATGAGCGGCTTTGGGAGCTGATCTGTACCAGGCACTGGGCCAACACCGGTTGCGGCAACCAACAGCTCCGATCTGTAGTTCTGGCCCTCGGTGGCTTCCGTCGCCTTCACTCCCTCTTCATCTGGCCTCTTACCAAACCCCAATCCTCCTCCTCCACATCTTCGTCGGCCTCCTCTTCCTCGTCTGCGTCTTGGTCTCCGTTTCCGGCGATGATTGGATCGAAGCCGCCAGCCCGGTGGGGGAAGGATGAGGTCCATCTCTCACTTTCCCTTCTCTCAATTCGTTACTACGAGAAGATGAATTTCAGCAACAGAGGCAGATGA

Protein sequence

MKRVVSDVDGDGDRNMGKKPRADTHDCVGGEHPSHKTGFVNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

Homology

[Close]

BLAST of Clc05G22580 vs. NCBI nr
Match: XP_038900230.1 (F-box protein GID2 [Benincasa hispida])

HSP 1 Score: 332.4 bits (851), Expect = 2.4e-87
Identity = 167/183 (91.26%), Postives = 170/183 (92.90%), Query Frame = 0


Query: 1   MKRVVSDVDGDGDRNMGKKPRADTHDCVGGEHPSHKTGFVNLDDNLLFEVFKHVDARTLA 60
           MKRVV   DGDGDR  GKKPRA+T DC GG  PS +TGF+NLDDNLLFEVFKHVDARTLA
Sbjct: 1   MKRVVP--DGDGDRKTGKKPRAETQDCAGGGDPSDRTGFMNLDDNLLFEVFKHVDARTLA 60

Query: 61  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 120
           MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK
Sbjct: 61  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 120

Query: 121 PQ---SSSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFS 180
           PQ   SSSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFS
Sbjct: 121 PQSSSSSSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFS 180

[Close]

BLAST of Clc05G22580 vs. NCBI nr
Match: XP_008452610.1 (PREDICTED: F-box protein GID2-like [Cucumis melo] >KAA0064421.1 F-box protein GID2-like [Cucumis melo var. makuwa] >TYK20166.1 F-box protein GID2-like [Cucumis melo var. makuwa])

HSP 1 Score: 322.4 bits (825), Expect = 2.5e-84
Identity = 168/192 (87.50%), Postives = 171/192 (89.06%), Query Frame = 0


Query: 1   MKRVVSDVDGDGDRNMGKKPRADTHDCV--GGEHPSHKTGFVNLDDNLLFEVFKHVDART 60
           MKRVVS  DG GDR MGKKP+A+T D    GGE  S KTGF+NLDDNLLFEVFKHVDART
Sbjct: 1   MKRVVS--DGVGDRKMGKKPKAETQDFTRGGGEDCSDKTGFMNLDDNLLFEVFKHVDART 60

Query: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120
           LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL
Sbjct: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120

Query: 121 TKPQSS---------SSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180
           TKPQSS         SSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR
Sbjct: 121 TKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180

Query: 181 YYEKMNFSNRGR 182
           YYEKMNFSNRGR
Sbjct: 181 YYEKMNFSNRGR 190

[Close]

BLAST of Clc05G22580 vs. NCBI nr
Match: XP_011654137.1 (F-box protein GID2 [Cucumis sativus] >KGN55239.1 hypothetical protein Csa_012230 [Cucumis sativus])

HSP 1 Score: 318.9 bits (816), Expect = 2.8e-83
Identity = 166/192 (86.46%), Postives = 170/192 (88.54%), Query Frame = 0


Query: 1   MKRVVSDVDGDGDRNMGKKPRADTHDCV---GGEHPSHKTGFVNLDDNLLFEVFKHVDAR 60
           MKRVV   DG GDR MGKKP+A+T D     GGE  S KTGF+NLDDNLLFEVFKHVDAR
Sbjct: 1   MKRVVP--DGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDAR 60

Query: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120
           TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP
Sbjct: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120

Query: 121 LTKPQ--------SSSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180
           LTKPQ        SSSS+SSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR
Sbjct: 121 LTKPQSSSSSSSSSSSSSSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180

Query: 181 YYEKMNFSNRGR 182
           YYEKMNFSNRGR
Sbjct: 181 YYEKMNFSNRGR 190

[Close]

BLAST of Clc05G22580 vs. NCBI nr
Match: XP_022977120.1 (F-box protein GID2-like [Cucurbita maxima])

HSP 1 Score: 310.5 bits (794), Expect = 9.8e-81
Identity = 159/183 (86.89%), Postives = 166/183 (90.71%), Query Frame = 0


Query: 1   MKRVVSDVDGDGDRNMGKKPRADTHDCVGGEHPSHKTGFVNLDDNLLFEVFKHVDARTLA 60
           MKRVV   +G GDR   KKPRA +HDC GG   S KTGF+NLDDNLLFEVFKHVDARTLA
Sbjct: 1   MKRVVP--EGKGDRKTEKKPRAVSHDCDGG-GVSDKTGFLNLDDNLLFEVFKHVDARTLA 60

Query: 61  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 120
           MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK
Sbjct: 61  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 120

Query: 121 PQSSSSTSSSASSSSSAS--WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSN 180
           PQSSSS+SSS SSS+S+S  WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNF +
Sbjct: 121 PQSSSSSSSSTSSSTSSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFGS 180

Query: 181 RGR 182
           RGR
Sbjct: 181 RGR 180

[Close]

BLAST of Clc05G22580 vs. NCBI nr
Match: XP_022937325.1 (F-box protein GID2-like [Cucurbita moschata] >XP_022937326.1 F-box protein GID2-like [Cucurbita moschata])

HSP 1 Score: 309.3 bits (791), Expect = 2.2e-80
Identity = 158/181 (87.29%), Postives = 166/181 (91.71%), Query Frame = 0


Query: 1   MKRVVSDVDGDGDRNMGKKPRADTHDCVGGEHPSHKTGFVNLDDNLLFEVFKHVDARTLA 60
           MKRVV   +G GDR   KKPRA +HDC GG   S KTGF+NLDDNLLFEVFKHVDARTLA
Sbjct: 1   MKRVVP--EGKGDRKTEKKPRAVSHDCDGG-GVSDKTGFMNLDDNLLFEVFKHVDARTLA 60

Query: 61  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 120
           MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK
Sbjct: 61  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 120

Query: 121 PQSSSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRG 180
           PQSSSS S+S+S+SSS+ WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFS+RG
Sbjct: 121 PQSSSS-STSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRG 177

Query: 181 R 182
           R
Sbjct: 181 R 177

[Close]

BLAST of Clc05G22580 vs. ExPASy Swiss-Prot
Match: Q9STX3 (F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 7.4e-47
Identity = 98/181 (54.14%), Postives = 118/181 (65.19%), Query Frame = 0


Query: 1   MKRVVSDVD--GDGDRNMGKKPRADTHDCVGGEHPSHKTGFVNLDDNLLFEVFKHVDART 60
           MKR  +D D  GD      KK ++   +         + GF NLD+NL++EV KHVDA+T
Sbjct: 1   MKRSTTDSDLAGDAHNETNKKMKSTEEE---------EIGFSNLDENLVYEVLKHVDAKT 60

Query: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120
           LAM++CVSK WHKTA+DERLWELICTRHW N GCG  QLRSVVLALGGFRRLHSL++WPL
Sbjct: 61  LAMSSCVSKIWHKTAQDERLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWPL 120

Query: 121 TKPQSSSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSN 180
           +KP                            P AR+GKDE+ L+LSLLSIRYYEKM+F+ 
Sbjct: 121 SKP---------------------------NPRARFGKDELKLTLSLLSIRYYEKMSFTK 145

[Close]

BLAST of Clc05G22580 vs. ExPASy Swiss-Prot
Match: Q7XAK4 (F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.4e-26
Identity = 64/137 (46.72%), Postives = 85/137 (62.04%), Query Frame = 0


Query: 41  NLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV 100
           +L ++L+FEV +  +ARTLA AACVS+ W + AEDERLWE  C R WAN G   +QLR+V
Sbjct: 75  DLGEDLVFEVLRRAEARTLAAAACVSRGWRQLAEDERLWEAACVREWANLGFSERQLRAV 134

Query: 101 VLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSSASW--SPFPAMIGSK-PPARWGKD 160
           VL+LGGFRRLH+++I PL                    W  +  P   G + PP R G+D
Sbjct: 135 VLSLGGFRRLHAVYIRPL-------------------QWRGAGVPRQQGRRQPPVRLGRD 192

Query: 161 EVHLSLSLLSIRYYEKM 175
           +V LSLSL SI +++ M
Sbjct: 195 QVQLSLSLFSIGFFQNM 192

[Close]

BLAST of Clc05G22580 vs. ExPASy Swiss-Prot
Match: Q9LUB6 (F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10
Identity = 40/135 (29.63%), Postives = 64/135 (47.41%), Query Frame = 0


Query: 40  VNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS 99
           +N   ++L E+ + +D  +L  AACV + W   A ++ +WE +C R  +     +  LRS
Sbjct: 28  INDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVSPR--PSLSLRS 87

Query: 100 VVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEV 159
           VV ALGG+R L+ L I P                           ++   P   W +D++
Sbjct: 88  VVSALGGYRCLYFLCIRP---------------------------VLARLPKLLWTRDQL 133

Query: 160 HLSLSLLSIRYYEKM 175
            LSLSL  + YYE++
Sbjct: 148 QLSLSLYCVHYYERL 133

[Close]

BLAST of Clc05G22580 vs. ExPASy TrEMBL
Match: A0A5A7VFE5 (F-box protein GID2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002980 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.2e-84
Identity = 168/192 (87.50%), Postives = 171/192 (89.06%), Query Frame = 0


Query: 1   MKRVVSDVDGDGDRNMGKKPRADTHDCV--GGEHPSHKTGFVNLDDNLLFEVFKHVDART 60
           MKRVVS  DG GDR MGKKP+A+T D    GGE  S KTGF+NLDDNLLFEVFKHVDART
Sbjct: 1   MKRVVS--DGVGDRKMGKKPKAETQDFTRGGGEDCSDKTGFMNLDDNLLFEVFKHVDART 60

Query: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120
           LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL
Sbjct: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120

Query: 121 TKPQSS---------SSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180
           TKPQSS         SSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR
Sbjct: 121 TKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180

Query: 181 YYEKMNFSNRGR 182
           YYEKMNFSNRGR
Sbjct: 181 YYEKMNFSNRGR 190

[Close]

BLAST of Clc05G22580 vs. ExPASy TrEMBL
Match: A0A1S3BV18 (F-box protein GID2-like OS=Cucumis melo OX=3656 GN=LOC103493580 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.2e-84
Identity = 168/192 (87.50%), Postives = 171/192 (89.06%), Query Frame = 0


Query: 1   MKRVVSDVDGDGDRNMGKKPRADTHDCV--GGEHPSHKTGFVNLDDNLLFEVFKHVDART 60
           MKRVVS  DG GDR MGKKP+A+T D    GGE  S KTGF+NLDDNLLFEVFKHVDART
Sbjct: 1   MKRVVS--DGVGDRKMGKKPKAETQDFTRGGGEDCSDKTGFMNLDDNLLFEVFKHVDART 60

Query: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120
           LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL
Sbjct: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120

Query: 121 TKPQSS---------SSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180
           TKPQSS         SSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR
Sbjct: 121 TKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180

Query: 181 YYEKMNFSNRGR 182
           YYEKMNFSNRGR
Sbjct: 181 YYEKMNFSNRGR 190

[Close]

BLAST of Clc05G22580 vs. ExPASy TrEMBL
Match: A0A0A0L2H5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G641710 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.3e-83
Identity = 166/192 (86.46%), Postives = 170/192 (88.54%), Query Frame = 0


Query: 1   MKRVVSDVDGDGDRNMGKKPRADTHDCV---GGEHPSHKTGFVNLDDNLLFEVFKHVDAR 60
           MKRVV   DG GDR MGKKP+A+T D     GGE  S KTGF+NLDDNLLFEVFKHVDAR
Sbjct: 1   MKRVVP--DGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDAR 60

Query: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120
           TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP
Sbjct: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120

Query: 121 LTKPQ--------SSSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180
           LTKPQ        SSSS+SSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR
Sbjct: 121 LTKPQSSSSSSSSSSSSSSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180

Query: 181 YYEKMNFSNRGR 182
           YYEKMNFSNRGR
Sbjct: 181 YYEKMNFSNRGR 190

[Close]

BLAST of Clc05G22580 vs. ExPASy TrEMBL
Match: A0A6J1ILD7 (F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111477283 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 4.8e-81
Identity = 159/183 (86.89%), Postives = 166/183 (90.71%), Query Frame = 0


Query: 1   MKRVVSDVDGDGDRNMGKKPRADTHDCVGGEHPSHKTGFVNLDDNLLFEVFKHVDARTLA 60
           MKRVV   +G GDR   KKPRA +HDC GG   S KTGF+NLDDNLLFEVFKHVDARTLA
Sbjct: 1   MKRVVP--EGKGDRKTEKKPRAVSHDCDGG-GVSDKTGFLNLDDNLLFEVFKHVDARTLA 60

Query: 61  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 120
           MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK
Sbjct: 61  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 120

Query: 121 PQSSSSTSSSASSSSSAS--WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSN 180
           PQSSSS+SSS SSS+S+S  WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNF +
Sbjct: 121 PQSSSSSSSSTSSSTSSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFGS 180

Query: 181 RGR 182
           RGR
Sbjct: 181 RGR 180

[Close]

BLAST of Clc05G22580 vs. ExPASy TrEMBL
Match: A0A6J1FA22 (F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111443649 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 1.1e-80
Identity = 158/181 (87.29%), Postives = 166/181 (91.71%), Query Frame = 0


Query: 1   MKRVVSDVDGDGDRNMGKKPRADTHDCVGGEHPSHKTGFVNLDDNLLFEVFKHVDARTLA 60
           MKRVV   +G GDR   KKPRA +HDC GG   S KTGF+NLDDNLLFEVFKHVDARTLA
Sbjct: 1   MKRVVP--EGKGDRKTEKKPRAVSHDCDGG-GVSDKTGFMNLDDNLLFEVFKHVDARTLA 60

Query: 61  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 120
           MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK
Sbjct: 61  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 120

Query: 121 PQSSSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRG 180
           PQSSSS S+S+S+SSS+ WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFS+RG
Sbjct: 121 PQSSSS-STSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRG 177

Query: 181 R 182
           R
Sbjct: 181 R 177

[Close]

BLAST of Clc05G22580 vs. TAIR 10
Match: AT4G24210.1 (F-box family protein )

HSP 1 Score: 188.3 bits (477), Expect = 5.2e-48
Identity = 98/181 (54.14%), Postives = 118/181 (65.19%), Query Frame = 0


Query: 1   MKRVVSDVD--GDGDRNMGKKPRADTHDCVGGEHPSHKTGFVNLDDNLLFEVFKHVDART 60
           MKR  +D D  GD      KK ++   +         + GF NLD+NL++EV KHVDA+T
Sbjct: 1   MKRSTTDSDLAGDAHNETNKKMKSTEEE---------EIGFSNLDENLVYEVLKHVDAKT 60

Query: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120
           LAM++CVSK WHKTA+DERLWELICTRHW N GCG  QLRSVVLALGGFRRLHSL++WPL
Sbjct: 61  LAMSSCVSKIWHKTAQDERLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWPL 120

Query: 121 TKPQSSSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSN 180
           +KP                            P AR+GKDE+ L+LSLLSIRYYEKM+F+ 
Sbjct: 121 SKP---------------------------NPRARFGKDELKLTLSLLSIRYYEKMSFTK 145

[Close]

BLAST of Clc05G22580 vs. TAIR 10
Match: AT5G48170.1 (F-box family protein )

HSP 1 Score: 68.2 bits (165), Expect = 7.9e-12
Identity = 40/135 (29.63%), Postives = 64/135 (47.41%), Query Frame = 0


Query: 40  VNLDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS 99
           +N   ++L E+ + +D  +L  AACV + W   A ++ +WE +C R  +     +  LRS
Sbjct: 28  INDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVSPR--PSLSLRS 87

Query: 100 VVLALGGFRRLHSLFIWPLTKPQSSSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEV 159
           VV ALGG+R L+ L I P                           ++   P   W +D++
Sbjct: 88  VVSALGGYRCLYFLCIRP---------------------------VLARLPKLLWTRDQL 133

Query: 160 HLSLSLLSIRYYEKM 175
            LSLSL  + YYE++
Sbjct: 148 QLSLSLYCVHYYERL 133

[Close]

BLAST of Clc05G22580 vs. TAIR 10
Match: AT1G21760.1 (F-box protein 7 )

HSP 1 Score: 43.1 bits (100), Expect = 2.7e-04
Identity = 18/50 (36.00%), Postives = 24/50 (48.00%), Query Frame = 0


Query: 42  LDDNLLFEVFKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTG 92
           L D LLFEVF  +    L  A+CV ++W  T  +   W   C + W   G
Sbjct: 62  LPDELLFEVFARMMPYDLGRASCVCRKWRYTVRNPMFWRNACLKAWQTAG 111

The following BLAST results are available for this feature:

BLAST of Clc05G22580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900230.1	2.4e-87	91.26	F-box protein GID2 [Benincasa hispida]	[more]
XP_008452610.1	2.5e-84	87.50	PREDICTED: F-box protein GID2-like [Cucumis melo] >KAA0064421.1 F-box protein GI...	[more]
XP_011654137.1	2.8e-83	86.46	F-box protein GID2 [Cucumis sativus] >KGN55239.1 hypothetical protein Csa_012230...	[more]
XP_022977120.1	9.8e-81	86.89	F-box protein GID2-like [Cucurbita maxima]	[more]
XP_022937325.1	2.2e-80	87.29	F-box protein GID2-like [Cucurbita moschata] >XP_022937326.1 F-box protein GID2-...	[more]

BLAST of Clc05G22580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STX3	7.4e-47	54.14	F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1	[more]
Q7XAK4	1.4e-26	46.72	F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1	[more]
Q9LUB6	1.1e-10	29.63	F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1	[more]

BLAST of Clc05G22580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VFE5	1.2e-84	87.50	F-box protein GID2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BV18	1.2e-84	87.50	F-box protein GID2-like OS=Cucumis melo OX=3656 GN=LOC103493580 PE=4 SV=1	[more]
A0A0A0L2H5	1.3e-83	86.46	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G641710 PE=4 ...	[more]
A0A6J1ILD7	4.8e-81	86.89	F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111477283 PE=4 SV=1	[more]
A0A6J1FA22	1.1e-80	87.29	F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111443649 PE=4 SV=1	[more]

BLAST of Clc05G22580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24210.1	5.2e-48	54.14	F-box family protein	[more]
AT5G48170.1	7.9e-12	29.63	F-box family protein	[more]
AT1G21760.1	2.7e-04	36.00	F-box protein 7	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 42..82 e-value: 0.0054 score: 26.0
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 41..83 e-value: 1.9E-7 score: 30.7
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 36..82 score: 9.232525
None	No IPR available	GENE3D	1.20.1280.50		coord: 31..139 e-value: 3.9E-12 score: 47.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	PANTHER	PTHR12874:SF22	F-BOX PROTEIN GID2-LIKE	coord: 16..176
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 16..176
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 31..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G22580.1	Clc05G22580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0010162	seed dormancy process
biological_process	GO:0009845	seed germination
cellular_component	GO:0005634	nucleus
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding