Clc05G17440 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G17440
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Transmembrane protein
Location	ClcChr05: 26178554 .. 26179180 (+)
RNA-Seq Expression	Clc05G17440
Synteny	Clc05G17440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAATAGTTTCATTACAACAGCACAAGACTTTGAGAGAACTAGGACTTAGTTTTCCATCTCCATGGAGGTTGGAATCGGCGCTACGTCGAGAAGGAGCCGGTTTTCTTCCTACGACCGGTTGGTGGCGGTAGGACTCAGCCTTCTTGCGGTGGTTTCACCGCTCTATATCGACCGGAGACCAAGCATCGAGGCAGAGGAGGAGTTGGAATCATCCATTAAACTTGGCTTCTGGTTGCCTGCTCTTCTCATGACTTTGATCTTCATTATTGCTGGAGTGCTTCACTTGGAACAGAGATGTGCTAGATTTGATGCTTATTGGATTCATAGAGTTGGTGGCTCTTCTTGTGGCATATTCATCCTTCTTCTCCTTCTTGCATTTGTTTTGAAGTGTAAAGCTTCTTTAATGTTCTGGGAGTCTTAAGAGCTTGTCCCAACTTTCAAAGTTCTTTGTGTTTGCTTCCTTGTGTGGTCTTAACTTTCAGAATACTTTTCAGTTTCATCAATGGACACTAAGCTTAGAGTTGAAGAAATTTGTACCTTCTGCAGTTTTATTTTCGTTACGTATTCGGTTTGAAGATTATACAAATAGTTTTCAATTTCATATCAGTATTTGGGATCA

mRNA sequence

AAAAAAAAAAATAGTTTCATTACAACAGCACAAGACTTTGAGAGAACTAGGACTTAGTTTTCCATCTCCATGGAGGTTGGAATCGGCGCTACGTCGAGAAGGAGCCGGTTTTCTTCCTACGACCGGTTGGTGGCGGTAGGACTCAGCCTTCTTGCGGTGGTTTCACCGCTCTATATCGACCGGAGACCAAGCATCGAGGCAGAGGAGGAGTTGGAATCATCCATTAAACTTGGCTTCTGGTTGCCTGCTCTTCTCATGACTTTGATCTTCATTATTGCTGGAGTGCTTCACTTGGAACAGAGATGTGCTAGATTTGATGCTTATTGGATTCATAGAGTTGGTGGCTCTTCTTGTGGCATATTCATCCTTCTTCTCCTTCTTGCATTTGTTTTGAAGTGTAAAGCTTCTTTAATGTTCTGGGAGTCTTAAGAGCTTGTCCCAACTTTCAAAGTTCTTTGTGTTTGCTTCCTTGTGTGGTCTTAACTTTCAGAATACTTTTCAGTTTCATCAATGGACACTAAGCTTAGAGTTGAAGAAATTTGTACCTTCTGCAGTTTTATTTTCGTTACGTATTCGGTTTGAAGATTATACAAATAGTTTTCAATTTCATATCAGTATTTGGGATCA

Coding sequence (CDS)

ATGGAGGTTGGAATCGGCGCTACGTCGAGAAGGAGCCGGTTTTCTTCCTACGACCGGTTGGTGGCGGTAGGACTCAGCCTTCTTGCGGTGGTTTCACCGCTCTATATCGACCGGAGACCAAGCATCGAGGCAGAGGAGGAGTTGGAATCATCCATTAAACTTGGCTTCTGGTTGCCTGCTCTTCTCATGACTTTGATCTTCATTATTGCTGGAGTGCTTCACTTGGAACAGAGATGTGCTAGATTTGATGCTTATTGGATTCATAGAGTTGGTGGCTCTTCTTGTGGCATATTCATCCTTCTTCTCCTTCTTGCATTTGTTTTGAAGTGTAAAGCTTCTTTAATGTTCTGGGAGTCTTAA

Protein sequence

MEVGIGATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPALLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASLMFWES

Homology

[Close]

BLAST of Clc05G17440 vs. NCBI nr
Match: XP_038899620.1 (uncharacterized protein LOC120086878 [Benincasa hispida])

HSP 1 Score: 219.5 bits (558), Expect = 1.5e-53
Identity = 112/119 (94.12%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPA 60
           MEVGIGATSRRSRFSSYDR VAVGL LLAVVSPLYIDRRPSIE  EE ESSI LGFWLPA
Sbjct: 1   MEVGIGATSRRSRFSSYDRWVAVGLGLLAVVSPLYIDRRPSIEELEEEESSINLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASLMFWES 120
           LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFWES
Sbjct: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119

[Close]

BLAST of Clc05G17440 vs. NCBI nr
Match: XP_022977145.1 (uncharacterized protein LOC111477299 [Cucurbita maxima])

HSP 1 Score: 216.9 bits (551), Expect = 9.7e-53
Identity = 108/118 (91.53%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPA 60
           MEVGIGATSRRSRFSSYDR VAVGL +LAVVSPLYIDRRPS +AEEE ESS+ LGFWLPA
Sbjct: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASLMFWE 119
           LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFW+
Sbjct: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWD 118

[Close]

BLAST of Clc05G17440 vs. NCBI nr
Match: XP_022936874.1 (uncharacterized protein LOC111443331 [Cucurbita moschata] >XP_023534909.1 uncharacterized protein LOC111796500 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 215.3 bits (547), Expect = 2.8e-52
Identity = 107/118 (90.68%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPA 60
           MEVGIGATSRRSRFSSYDR VAVGL +LAVVSPLYIDRRPS +AEEE ESS+ LGFWLPA
Sbjct: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASLMFWE 119
           LL+TLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFW+
Sbjct: 61  LLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWD 118

[Close]

BLAST of Clc05G17440 vs. NCBI nr
Match: KAG6591490.1 (hypothetical protein SDJN03_13836, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213.0 bits (541), Expect = 1.4e-51
Identity = 106/118 (89.83%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPA 60
           MEVGIGATSRRSRFSSYDR VAVGL +LAVVSPLYIDRRPS +AEEE ESS+ LGFWLPA
Sbjct: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASLMFWE 119
           LL+TLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFI+LLLLAFVLKCKASLM W+
Sbjct: 61  LLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMLWD 118

[Close]

BLAST of Clc05G17440 vs. NCBI nr
Match: XP_011654202.1 (uncharacterized protein LOC105435317 [Cucumis sativus] >KGN55379.1 hypothetical protein Csa_012273 [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 5.3e-51
Identity = 107/119 (89.92%), Postives = 110/119 (92.44%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPA 60
           MEVG+GA SRRSRFSSYDR +AVGL LLAVVSPLYIDRRPSIE  EE ESSI LGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASLMFWES 120
           LLM LIFIIAGVLHLEQRCARFD YWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFWES
Sbjct: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119

[Close]

BLAST of Clc05G17440 vs. ExPASy TrEMBL
Match: A0A6J1ILG7 (uncharacterized protein LOC111477299 OS=Cucurbita maxima OX=3661 GN=LOC111477299 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 4.7e-53
Identity = 108/118 (91.53%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPA 60
           MEVGIGATSRRSRFSSYDR VAVGL +LAVVSPLYIDRRPS +AEEE ESS+ LGFWLPA
Sbjct: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASLMFWE 119
           LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFW+
Sbjct: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWD 118

[Close]

BLAST of Clc05G17440 vs. ExPASy TrEMBL
Match: A0A6J1F9J0 (uncharacterized protein LOC111443331 OS=Cucurbita moschata OX=3662 GN=LOC111443331 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.4e-52
Identity = 107/118 (90.68%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPA 60
           MEVGIGATSRRSRFSSYDR VAVGL +LAVVSPLYIDRRPS +AEEE ESS+ LGFWLPA
Sbjct: 1   MEVGIGATSRRSRFSSYDRWVAVGLGILAVVSPLYIDRRPSFDAEEEEESSMNLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASLMFWE 119
           LL+TLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFW+
Sbjct: 61  LLITLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFIVLLLLAFVLKCKASLMFWD 118

[Close]

BLAST of Clc05G17440 vs. ExPASy TrEMBL
Match: A0A0A0L2W6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G648010 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.6e-51
Identity = 107/119 (89.92%), Postives = 110/119 (92.44%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPA 60
           MEVG+GA SRRSRFSSYDR +AVGL LLAVVSPLYIDRRPSIE  EE ESSI LGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASLMFWES 120
           LLM LIFIIAGVLHLEQRCARFD YWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFWES
Sbjct: 61  LLMILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119

[Close]

BLAST of Clc05G17440 vs. ExPASy TrEMBL
Match: A0A5D3D907 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001720 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 7.5e-51
Identity = 106/119 (89.08%), Postives = 110/119 (92.44%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPA 60
           MEVG+GA SRRSRFSSYDR +AVGL LLAVVSPLYIDRRPSIE  EE ESSI LGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASLMFWES 120
           LL+ LIFIIAGVLHLEQRCARFD YWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFWES
Sbjct: 61  LLIILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119

[Close]

BLAST of Clc05G17440 vs. ExPASy TrEMBL
Match: A0A1S3BUL9 (uncharacterized protein LOC103493702 OS=Cucumis melo OX=3656 GN=LOC103493702 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 7.5e-51
Identity = 106/119 (89.08%), Postives = 110/119 (92.44%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPA 60
           MEVG+GA SRRSRFSSYDR +AVGL LLAVVSPLYIDRRPSIE  EE ESSI LGFWLPA
Sbjct: 1   MEVGVGAMSRRSRFSSYDRWLAVGLGLLAVVSPLYIDRRPSIEELEEEESSIHLGFWLPA 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKASLMFWES 120
           LL+ LIFIIAGVLHLEQRCARFD YWIHRVGGSSCGIFI+LLLLAFVLKCKASLMFWES
Sbjct: 61  LLIILIFIIAGVLHLEQRCARFDPYWIHRVGGSSCGIFIILLLLAFVLKCKASLMFWES 119

[Close]

BLAST of Clc05G17440 vs. TAIR 10
Match: AT5G21910.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 88.2 bits (217), Expect = 4.9e-18
Identity = 52/113 (46.02%), Postives = 70/113 (61.95%), Query Frame = 0


Query: 1   MEVGIGATSRRSRFSSYDRLVAVGLSLLAVVSPLYIDRRPSIEAEEELESSIKLGFWLPA 60
           ME G  ++    RF++  +L+A+ LS+LAV+SPLYIDR    + EEE E      F    
Sbjct: 1   METG-SSSPMMGRFTTSRKLLAISLSVLAVLSPLYIDRLSEEDLEEE-EELFSFMFSFSL 60

Query: 61  LLMTLIFIIAGVLHLEQRCARFDAYWIHRVGGSSCGIFILLLLLAFVLKCKAS 114
           LL+ LI  IA  L+ +    RFD YWIHR+ GS  G+ ++L+LL FVL CKAS
Sbjct: 61  LLLLLILAIALSLYSDPSLTRFDPYWIHRLCGSFGGLLVILILLVFVLICKAS 111

The following BLAST results are available for this feature:

BLAST of Clc05G17440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899620.1	1.5e-53	94.12	uncharacterized protein LOC120086878 [Benincasa hispida]	[more]
XP_022977145.1	9.7e-53	91.53	uncharacterized protein LOC111477299 [Cucurbita maxima]	[more]
XP_022936874.1	2.8e-52	90.68	uncharacterized protein LOC111443331 [Cucurbita moschata] >XP_023534909.1 unchar...	[more]
KAG6591490.1	1.4e-51	89.83	hypothetical protein SDJN03_13836, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_011654202.1	5.3e-51	89.92	uncharacterized protein LOC105435317 [Cucumis sativus] >KGN55379.1 hypothetical ...	[more]

BLAST of Clc05G17440 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc05G17440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ILG7	4.7e-53	91.53	uncharacterized protein LOC111477299 OS=Cucurbita maxima OX=3661 GN=LOC111477299...	[more]
A0A6J1F9J0	1.4e-52	90.68	uncharacterized protein LOC111443331 OS=Cucurbita moschata OX=3662 GN=LOC1114433...	[more]
A0A0A0L2W6	2.6e-51	89.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G648010 PE=4 SV=1	[more]
A0A5D3D907	7.5e-51	89.08	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BUL9	7.5e-51	89.08	uncharacterized protein LOC103493702 OS=Cucumis melo OX=3656 GN=LOC103493702 PE=...	[more]

BLAST of Clc05G17440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G21910.1	4.9e-18	46.02	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35758	TRANSMEMBRANE PROTEIN	coord: 10..114
None	No IPR available	PANTHER	PTHR35758:SF2	TRANSMEMBRANE PROTEIN	coord: 10..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G17440.1	Clc05G17440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane