Clc05G15990 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G15990
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	C2H2-type domain-containing protein
Location	ClcChr05: 20858962 .. 20859426 (-)
RNA-Seq Expression	Clc05G15990
Synteny	Clc05G15990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGACCCAGGCATTTACGACTTCCTTAGCCAAACAACCACTCCTTCTAATTCTTCATCCAAAGCTTCCAGAAAATCTCAGTCCCAATACTCTTCCTCTCGCATTTTTCCATGTCTTTACTGCCCTCGCAAATTTTATACTTCTCAAGCCCTAGGCGGCCACCAAAATGCTCACAAGAGAGAAAGAGCCGCCTCTCGAAAGGCTTTCACCTCTGAAATTCTTCATCTCGGTTCCTTTCAACACTCGCCGCCGCCGACCATGACTCATCATCATCATCATCATCTTCCTACGCAGTATGCGCCAGCTCCGCCTCCGACTCCACCTGCTTTTCTCGACGACCATTGGTTTCATCAGAATCATTTCTGTGCTAACACCACCACCACCGCCTCGCCGGATGCTCTCTCTCCCAACACTGATGCCGCCGTTGAACATGTAACCATCGATCTCACTCTTCGTTTATAA

mRNA sequence

ATGGCGGACCCAGGCATTTACGACTTCCTTAGCCAAACAACCACTCCTTCTAATTCTTCATCCAAAGCTTCCAGAAAATCTCAGTCCCAATACTCTTCCTCTCGCATTTTTCCATGTCTTTACTGCCCTCGCAAATTTTATACTTCTCAAGCCCTAGGCGGCCACCAAAATGCTCACAAGAGAGAAAGAGCCGCCTCTCGAAAGGCTTTCACCTCTGAAATTCTTCATCTCGGTTCCTTTCAACACTCGCCGCCGCCGACCATGACTCATCATCATCATCATCATCTTCCTACGCAGTATGCGCCAGCTCCGCCTCCGACTCCACCTGCTTTTCTCGACGACCATTGGTTTCATCAGAATCATTTCTGTGCTAACACCACCACCACCGCCTCGCCGGATGCTCTCTCTCCCAACACTGATGCCGCCGTTGAACATGTAACCATCGATCTCACTCTTCGTTTATAA

Coding sequence (CDS)

ATGGCGGACCCAGGCATTTACGACTTCCTTAGCCAAACAACCACTCCTTCTAATTCTTCATCCAAAGCTTCCAGAAAATCTCAGTCCCAATACTCTTCCTCTCGCATTTTTCCATGTCTTTACTGCCCTCGCAAATTTTATACTTCTCAAGCCCTAGGCGGCCACCAAAATGCTCACAAGAGAGAAAGAGCCGCCTCTCGAAAGGCTTTCACCTCTGAAATTCTTCATCTCGGTTCCTTTCAACACTCGCCGCCGCCGACCATGACTCATCATCATCATCATCATCTTCCTACGCAGTATGCGCCAGCTCCGCCTCCGACTCCACCTGCTTTTCTCGACGACCATTGGTTTCATCAGAATCATTTCTGTGCTAACACCACCACCACCGCCTCGCCGGATGCTCTCTCTCCCAACACTGATGCCGCCGTTGAACATGTAACCATCGATCTCACTCTTCGTTTATAA

Protein sequence

MADPGIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSFQHSPPPTMTHHHHHHLPTQYAPAPPPTPPAFLDDHWFHQNHFCANTTTTASPDALSPNTDAAVEHVTIDLTLRL

Homology

[Close]

BLAST of Clc05G15990 vs. NCBI nr
Match: XP_022934585.1 (protein LATE FLOWERING-like [Cucurbita moschata])

HSP 1 Score: 230.3 bits (586), Expect = 1.1e-56
Identity = 127/166 (76.51%), Postives = 131/166 (78.92%), Query Frame = 0


Query: 1   MADPGIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60
           MADP IYDFL+QTTT SNS+ KASRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK
Sbjct: 1   MADPAIYDFLTQTTTASNSAPKASRKFQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60

Query: 61  RERAASRKAFTSEILHLGSFQHSPPPTMTHHHHHHLPTQYAPAPPPTP-----PA-FLDD 120
           RERAASRKAF SEILHLGS    PPPT T   HHHLP  Y  AP PTP     PA FL  
Sbjct: 61  RERAASRKAFASEILHLGSLPPPPPPTTT-TTHHHLPQPYTVAPSPTPTPTPAPADFLGQ 120

Query: 121 HWFHQNHFCANTTTT------ASPDALSPNTDAAVEHVTIDLTLRL 155
           HWF+QNH+ ANTTTT      ASPDALSPN D AVEHVTIDLTLRL
Sbjct: 121 HWFNQNHYSANTTTTASASASASPDALSPNADTAVEHVTIDLTLRL 165

[Close]

BLAST of Clc05G15990 vs. NCBI nr
Match: XP_022983390.1 (protein LATE FLOWERING-like [Cucurbita maxima])

HSP 1 Score: 228.8 bits (582), Expect = 3.2e-56
Identity = 128/164 (78.05%), Postives = 132/164 (80.49%), Query Frame = 0


Query: 1   MADPGIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60
           MADP IYDFL+QTTT SNS+ KASRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK
Sbjct: 1   MADPAIYDFLTQTTTASNSAPKASRKFQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60

Query: 61  RERAASRKAFTSEILHLGSFQHSPPPTMTHHHHHHLPTQY--APAPPPTP-PA-FLDDHW 120
           RERAASRKAF SEILHLGS    P PT T   HHHLP  Y  APAP PTP PA FL  HW
Sbjct: 61  RERAASRKAFASEILHLGSL--PPQPTTTTMTHHHLPQPYTVAPAPTPTPAPADFLGQHW 120

Query: 121 FHQNHFCANTTTT------ASPDALSPNTDAAVEHVTIDLTLRL 155
           F+QNH+ ANTTTT      ASPDALSPN D AVEHVTIDLTLRL
Sbjct: 121 FNQNHYSANTTTTTTASASASPDALSPNVDTAVEHVTIDLTLRL 162

[Close]

BLAST of Clc05G15990 vs. NCBI nr
Match: XP_023529006.1 (protein LATE FLOWERING-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.0 bits (580), Expect = 5.5e-56
Identity = 125/170 (73.53%), Postives = 130/170 (76.47%), Query Frame = 0


Query: 1   MADPGIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60
           MADP IYDFL+QTTT SNS++KASRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK
Sbjct: 1   MADPAIYDFLTQTTTASNSATKASRKFQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60

Query: 61  RERAASRKAFTSEILHLGSFQHSPPPTMTHHHHHHLPTQYAPAPPPTP-------PA-FL 120
           RERAASRKAF SEILHLGS    PPP  T HHH   P    PAP PTP       PA FL
Sbjct: 61  RERAASRKAFASEILHLGSLPPPPPPPTTAHHHLPQPYTVVPAPTPTPTPTTTPAPADFL 120

Query: 121 DDHWFHQNHFCANTTTT--------ASPDALSPNTDAAVEHVTIDLTLRL 155
             HWF+QNH+ ANTTTT        ASPDALSPN D AVEHVTIDLTLRL
Sbjct: 121 GQHWFNQNHYSANTTTTTTTTTTASASPDALSPNADTAVEHVTIDLTLRL 170

[Close]

BLAST of Clc05G15990 vs. NCBI nr
Match: KAG7017856.1 (Zinc finger protein KNUCKLES, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 226.1 bits (575), Expect = 2.1e-55
Identity = 127/175 (72.57%), Postives = 131/175 (74.86%), Query Frame = 0


Query: 1   MADPGIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60
           MADP IYDFL+QTTT SNS+ KASRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK
Sbjct: 1   MADPAIYDFLTQTTTASNSAPKASRKFQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60

Query: 61  RERAASRKAFTSEILHLGSFQHSPPP--TMTHHHHHHLPTQYAPAPPPTP---------P 120
           RERAASRKAF SEILHLGS    PPP  T T   HHHLP  Y  AP PTP         P
Sbjct: 61  RERAASRKAFASEILHLGSLPPPPPPTTTTTTTTHHHLPQPYTVAPAPTPIPTPTTTPAP 120

Query: 121 A-FLDDHWFHQNHFCANTTTT---------ASPDALSPNTDAAVEHVTIDLTLRL 155
           A FL  HWF+QNH+ ANTTTT         ASPDALSPN D AVEHVTIDLTLRL
Sbjct: 121 ADFLGQHWFNQNHYSANTTTTTTAASASASASPDALSPNADTAVEHVTIDLTLRL 175

[Close]

BLAST of Clc05G15990 vs. NCBI nr
Match: KAG6581122.1 (Zinc finger protein KNUCKLES, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 224.2 bits (570), Expect = 7.9e-55
Identity = 127/180 (70.56%), Postives = 131/180 (72.78%), Query Frame = 0


Query: 1   MADPGIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60
           MADP IYDFL+QTTT SNS+ KASRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK
Sbjct: 1   MADPAIYDFLTQTTTASNSAPKASRKFQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60

Query: 61  RERAASRKAFTSEILHLGSFQHSPPP--TMTHHHHHHLPTQYAPAPPPTP---------P 120
           RERAASRKAF SEILHLGS    PPP  T T   HHHLP  Y  AP PTP         P
Sbjct: 61  RERAASRKAFASEILHLGSLPPPPPPPTTTTTTTHHHLPQPYTVAPAPTPIPTPTTTPAP 120

Query: 121 A-FLDDHWFHQNHFCANTTTT--------------ASPDALSPNTDAAVEHVTIDLTLRL 155
           A FL  HWF+QNH+ ANTTTT              ASPDALSPN D AVEHVTIDLTLRL
Sbjct: 121 ADFLGQHWFNQNHYSANTTTTTTTTTTTAASASASASPDALSPNADTAVEHVTIDLTLRL 180

[Close]

BLAST of Clc05G15990 vs. ExPASy Swiss-Prot
Match: Q9FFX4 (Zinc finger protein KNUCKLES OS=Arabidopsis thaliana OX=3702 GN=KNU PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.5e-13
Identity = 44/82 (53.66%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 4  PGIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRER 63
          P    F+    T S SS + S  S +  +S R+FPC YCPRKFYTSQALGGHQNAHKRER
Sbjct: 6  PSYLHFVGPAKTRS-SSKRHSFSSSAHPASHRLFPCQYCPRKFYTSQALGGHQNAHKRER 65

Query: 64 AASRKAFTSEILHLGSFQHSPP 86
          AA+R+       +LG   +SPP
Sbjct: 66 AAARR-------NLGVLANSPP 79

[Close]

BLAST of Clc05G15990 vs. ExPASy Swiss-Prot
Match: Q9FKA9 (Protein LATE FLOWERING OS=Arabidopsis thaliana OX=3702 GN=LATE PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.9e-12
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 21  SKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTS-EILHLGS 80
           SK + K+    SS RIFPCL+C RKF++SQALGGHQNAHK+ER A+R+A  + + ++   
Sbjct: 19  SKEANKTDENTSSLRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARRAKRAYDFVNNND 78

Query: 81  FQHSPPPTMTHHHHHHLPTQYAPA 104
           F H+ P  ++    HHL     PA
Sbjct: 79  FLHTLPVFLSSPSQHHLTILGYPA 102

[Close]

BLAST of Clc05G15990 vs. ExPASy Swiss-Prot
Match: Q39263 (Zinc finger protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZFP4 PE=2 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 8.0e-10
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 11  SQTTTPSNSSSKASRKSQSQYS----SSRIFPCLYCPRKFYTSQALGGHQNAHKRERAAS 70
           S  T P +S+S++S   Q Q      S R+F C YC RKFY+SQALGGHQNAHKRER  +
Sbjct: 55  SSLTLPLSSTSESSNPEQQQQQQPSVSKRVFSCNYCQRKFYSSQALGGHQNAHKRERTLA 114

[Close]

BLAST of Clc05G15990 vs. ExPASy Swiss-Prot
Match: Q42485 (Zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=ZFP1 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.0e-09
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 17 SNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK 69
          S+SS+   +  Q Q +  R+F C YC RKFY+SQALGGHQNAHKRER  +++
Sbjct: 48 SSSSTSHHQHQQEQLADPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR 99

[Close]

BLAST of Clc05G15990 vs. ExPASy Swiss-Prot
Match: Q39261 (Zinc finger protein 2 OS=Arabidopsis thaliana OX=3702 GN=ZFP2 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.8e-09
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 18 NSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA 70
          +SSS +S  S S     R+F C YC RKFY+SQALGGHQNAHK ER  ++K+
Sbjct: 33 SSSSSSSTNSSSCLEQPRVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKS 84

[Close]

BLAST of Clc05G15990 vs. ExPASy TrEMBL
Match: A0A6J1F843 (protein LATE FLOWERING-like OS=Cucurbita moschata OX=3662 GN=LOC111441721 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 5.3e-57
Identity = 127/166 (76.51%), Postives = 131/166 (78.92%), Query Frame = 0


Query: 1   MADPGIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60
           MADP IYDFL+QTTT SNS+ KASRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK
Sbjct: 1   MADPAIYDFLTQTTTASNSAPKASRKFQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60

Query: 61  RERAASRKAFTSEILHLGSFQHSPPPTMTHHHHHHLPTQYAPAPPPTP-----PA-FLDD 120
           RERAASRKAF SEILHLGS    PPPT T   HHHLP  Y  AP PTP     PA FL  
Sbjct: 61  RERAASRKAFASEILHLGSLPPPPPPTTT-TTHHHLPQPYTVAPSPTPTPTPAPADFLGQ 120

Query: 121 HWFHQNHFCANTTTT------ASPDALSPNTDAAVEHVTIDLTLRL 155
           HWF+QNH+ ANTTTT      ASPDALSPN D AVEHVTIDLTLRL
Sbjct: 121 HWFNQNHYSANTTTTASASASASPDALSPNADTAVEHVTIDLTLRL 165

[Close]

BLAST of Clc05G15990 vs. ExPASy TrEMBL
Match: A0A6J1J5R2 (protein LATE FLOWERING-like OS=Cucurbita maxima OX=3661 GN=LOC111481997 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.5e-56
Identity = 128/164 (78.05%), Postives = 132/164 (80.49%), Query Frame = 0


Query: 1   MADPGIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60
           MADP IYDFL+QTTT SNS+ KASRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK
Sbjct: 1   MADPAIYDFLTQTTTASNSAPKASRKFQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60

Query: 61  RERAASRKAFTSEILHLGSFQHSPPPTMTHHHHHHLPTQY--APAPPPTP-PA-FLDDHW 120
           RERAASRKAF SEILHLGS    P PT T   HHHLP  Y  APAP PTP PA FL  HW
Sbjct: 61  RERAASRKAFASEILHLGSL--PPQPTTTTMTHHHLPQPYTVAPAPTPTPAPADFLGQHW 120

Query: 121 FHQNHFCANTTTT------ASPDALSPNTDAAVEHVTIDLTLRL 155
           F+QNH+ ANTTTT      ASPDALSPN D AVEHVTIDLTLRL
Sbjct: 121 FNQNHYSANTTTTTTASASASPDALSPNVDTAVEHVTIDLTLRL 162

[Close]

BLAST of Clc05G15990 vs. ExPASy TrEMBL
Match: A0A6J1EJQ6 (protein LATE FLOWERING-like OS=Cucurbita moschata OX=3662 GN=LOC111435120 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 5.7e-51
Identity = 116/158 (73.42%), Postives = 123/158 (77.85%), Query Frame = 0


Query: 1   MADPGIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60
           MADP IYDFLSQTT  ++     SRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK
Sbjct: 1   MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60

Query: 61  RERAASRKAFTSEILHLGSFQHS--PPPTMTHHHHHHLPTQYAPAPPPTPPAFLDDHWFH 120
           RERAASRKAFTSEILHLGS QHS  PPP  T +HH   P+  A A    P A  D+HWFH
Sbjct: 61  RERAASRKAFTSEILHLGSLQHSRPPPPPPTTYHHLASPSTTALA----PSALFDEHWFH 120

Query: 121 QNHFCANTTTT--ASPDALSPNTDAAVEHVTIDLTLRL 155
           QN+    TTTT  ASP+ LSPN DAAVEHVTIDLTLRL
Sbjct: 121 QNNHYRGTTTTASASPNDLSPNADAAVEHVTIDLTLRL 154

[Close]

BLAST of Clc05G15990 vs. ExPASy TrEMBL
Match: A0A6J1JQI7 (protein LATE FLOWERING-like OS=Cucurbita maxima OX=3661 GN=LOC111486586 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.8e-50
Identity = 115/160 (71.88%), Postives = 122/160 (76.25%), Query Frame = 0


Query: 1   MADPGIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60
           MADP IYDFLSQTT  ++     SRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK
Sbjct: 1   MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60

Query: 61  RERAASRKAFTSEILHLGSFQHS--PPPTMTHHHHHHLPTQYAPAPPPTPPAFLDDHWFH 120
           RERAASRK FTSEILHLGS QHS  PPP  T +HH   P+  A A    P A  D+HWFH
Sbjct: 61  RERAASRKVFTSEILHLGSLQHSRPPPPPPTTYHHLASPSATALA----PSALFDEHWFH 120

Query: 121 QNHFCANTTTT----ASPDALSPNTDAAVEHVTIDLTLRL 155
           QN+    TTTT    ASP+ LSPN DAAVEHVTIDLTLRL
Sbjct: 121 QNNHYRGTTTTASASASPNDLSPNADAAVEHVTIDLTLRL 156

[Close]

BLAST of Clc05G15990 vs. ExPASy TrEMBL
Match: A0A0A0LDF1 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G509430 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 2.0e-43
Identity = 113/170 (66.47%), Postives = 126/170 (74.12%), Query Frame = 0


Query: 1   MADPGIYDFLSQTTT--PSNSSSKASR--KSQSQYSSSRIFPCLYCPRKFYTSQALGGHQ 60
           MADP IYDFLSQTTT  PSN+S+   +   S+  +S SRIFPCLYCPRKFYTSQALGGHQ
Sbjct: 1   MADPTIYDFLSQTTTAPPSNNSTTLPKAASSRKSHSQSRIFPCLYCPRKFYTSQALGGHQ 60

Query: 61  NAHKRER-AASRKA---FTSEILHLG--SFQHS---PPPTMTHHHHHHLPTQYAPAPPPT 120
           NAHKRER AASRKA    T+EILHLG  S QHS   PPPT   HHHHHLP  + P   PT
Sbjct: 61  NAHKRERAAASRKAAALTTTEILHLGCSSLQHSPPPPPPTTITHHHHHLPPHFYPL--PT 120

Query: 121 PPAFLDDHW-FHQNHFCANTTTTASPDALSP--NTDAAVEHVTIDLTLRL 155
           PP+FLD H  FH N+FC N  T+ASPD LSP  +TD A+EH+ IDLTLRL
Sbjct: 121 PPSFLDHHHSFHHNNFCPN--TSASPDTLSPTNSTDPALEHLNIDLTLRL 166

[Close]

BLAST of Clc05G15990 vs. TAIR 10
Match: AT5G14010.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 76.3 bits (186), Expect = 2.5e-14
Identity = 44/82 (53.66%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 4  PGIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRER 63
          P    F+    T S SS + S  S +  +S R+FPC YCPRKFYTSQALGGHQNAHKRER
Sbjct: 6  PSYLHFVGPAKTRS-SSKRHSFSSSAHPASHRLFPCQYCPRKFYTSQALGGHQNAHKRER 65

Query: 64 AASRKAFTSEILHLGSFQHSPP 86
          AA+R+       +LG   +SPP
Sbjct: 66 AAARR-------NLGVLANSPP 79

[Close]

BLAST of Clc05G15990 vs. TAIR 10
Match: AT5G48890.1 (C2H2-like zinc finger protein )

HSP 1 Score: 73.2 bits (178), Expect = 2.1e-13
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 21  SKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTS-EILHLGS 80
           SK + K+    SS RIFPCL+C RKF++SQALGGHQNAHK+ER A+R+A  + + ++   
Sbjct: 19  SKEANKTDENTSSLRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARRAKRAYDFVNNND 78

Query: 81  FQHSPPPTMTHHHHHHLPTQYAPA 104
           F H+ P  ++    HHL     PA
Sbjct: 79  FLHTLPVFLSSPSQHHLTILGYPA 102

[Close]

BLAST of Clc05G15990 vs. TAIR 10
Match: AT1G66140.1 (zinc finger protein 4 )

HSP 1 Score: 65.1 bits (157), Expect = 5.7e-11
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 11  SQTTTPSNSSSKASRKSQSQYS----SSRIFPCLYCPRKFYTSQALGGHQNAHKRERAAS 70
           S  T P +S+S++S   Q Q      S R+F C YC RKFY+SQALGGHQNAHKRER  +
Sbjct: 55  SSLTLPLSSTSESSNPEQQQQQQPSVSKRVFSCNYCQRKFYSSQALGGHQNAHKRERTLA 114

[Close]

BLAST of Clc05G15990 vs. TAIR 10
Match: AT1G80730.1 (zinc-finger protein 1 )

HSP 1 Score: 62.8 bits (151), Expect = 2.8e-10
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 17 SNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK 69
          S+SS+   +  Q Q +  R+F C YC RKFY+SQALGGHQNAHKRER  +++
Sbjct: 48 SSSSTSHHQHQQEQLADPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR 99

[Close]

BLAST of Clc05G15990 vs. TAIR 10
Match: AT5G57520.1 (zinc finger protein 2 )

HSP 1 Score: 62.0 bits (149), Expect = 4.8e-10
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 18 NSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA 70
          +SSS +S  S S     R+F C YC RKFY+SQALGGHQNAHK ER  ++K+
Sbjct: 33 SSSSSSSTNSSSCLEQPRVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKS 84

The following BLAST results are available for this feature:

BLAST of Clc05G15990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022934585.1	1.1e-56	76.51	protein LATE FLOWERING-like [Cucurbita moschata]	[more]
XP_022983390.1	3.2e-56	78.05	protein LATE FLOWERING-like [Cucurbita maxima]	[more]
XP_023529006.1	5.5e-56	73.53	protein LATE FLOWERING-like [Cucurbita pepo subsp. pepo]	[more]
KAG7017856.1	2.1e-55	72.57	Zinc finger protein KNUCKLES, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
KAG6581122.1	7.9e-55	70.56	Zinc finger protein KNUCKLES, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Clc05G15990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FFX4	3.5e-13	53.66	Zinc finger protein KNUCKLES OS=Arabidopsis thaliana OX=3702 GN=KNU PE=1 SV=1	[more]
Q9FKA9	2.9e-12	47.62	Protein LATE FLOWERING OS=Arabidopsis thaliana OX=3702 GN=LATE PE=2 SV=1	[more]
Q39263	8.0e-10	53.97	Zinc finger protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZFP4 PE=2 SV=2	[more]
Q42485	4.0e-09	55.77	Zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=ZFP1 PE=2 SV=1	[more]
Q39261	6.8e-09	57.69	Zinc finger protein 2 OS=Arabidopsis thaliana OX=3702 GN=ZFP2 PE=1 SV=1	[more]

BLAST of Clc05G15990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F843	5.3e-57	76.51	protein LATE FLOWERING-like OS=Cucurbita moschata OX=3662 GN=LOC111441721 PE=4 S...	[more]
A0A6J1J5R2	1.5e-56	78.05	protein LATE FLOWERING-like OS=Cucurbita maxima OX=3661 GN=LOC111481997 PE=4 SV=...	[more]
A0A6J1EJQ6	5.7e-51	73.42	protein LATE FLOWERING-like OS=Cucurbita moschata OX=3662 GN=LOC111435120 PE=4 S...	[more]
A0A6J1JQI7	2.8e-50	71.88	protein LATE FLOWERING-like OS=Cucurbita maxima OX=3661 GN=LOC111486586 PE=4 SV=...	[more]
A0A0A0LDF1	2.0e-43	66.47	C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G509430 P...	[more]

BLAST of Clc05G15990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14010.1	2.5e-14	53.66	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT5G48890.1	2.1e-13	47.62	C2H2-like zinc finger protein	[more]
AT1G66140.1	5.7e-11	53.97	zinc finger protein 4	[more]
AT1G80730.1	2.8e-10	55.77	zinc-finger protein 1	[more]
AT5G57520.1	4.8e-10	57.69	zinc finger protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 14..82 e-value: 1.1E-5 score: 27.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..29
None	No IPR available	PANTHER	PTHR45730	ZINC FINGER PROTEIN JAGGED	coord: 17..154
None	No IPR available	PANTHER	PTHR45730:SF28	OS02G0182300 PROTEIN	coord: 17..154
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 39..59
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 37..64 score: 10.595541
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 34..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G15990.1	Clc05G15990.1	mRNA