Clc05G14520 (gene) Watermelon (cordophanus) v2

Overview
NameClc05G14520
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptionmediator of RNA polymerase II transcription subunit 23
LocationClcChr05: 14821929 .. 14823678 (-)
RNA-Seq ExpressionClc05G14520
SyntenyClc05G14520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAGCATCTGCGCTTATTATATAGATATAGATAAAGAGCAAGGGAAAGCGGTTCTTCCAATAGCACAAACCCGTGCACTCATTTTTATAATGCAAGGTTTGCTATATTATGCTTTCAGGACAATATTGTCCTACAATTTTCTGCAGAAGTCAATAAAGGGAAGTGGGAAACTTGTTCCTCAAGTTGTTAAGATTTGGGTGGAGAGGTATGAATAAGATCCAAATGCTTCAGGTGGTTCAGCTCCGGGCAATGCTGTTTGAGGCAATTCAAAGTTTGTTTATCGATCTGATTTGAGAGAATTTAGAAAATTGTCTTTTTGTTCTAAGTTCTCTTTGAACCTTGGATAATGTAAGTATGTATGAAGCTGGTTTGGATATACTGGACCCGCTTATTTTGATGGCTAATTAACAACGAGACCATCCTGTAGAAGCTGTATTGTAACAAAAGAAAGATTGTTGATTACTGAAATCTACAAACTTACAGGCATGTGGAACTAAGTACCATATCAAGGGTGACCTCTTGGAAGAGACTGATGTTGATGATGTTGTTGCTCCAGTCTAGTCAATCTCATAAAAAGAGTATCCTAAATCTGCATTTTAATCTTTTTTGCAAATAGTTTATATTAAACCCTCGTTTACGTCTTCCAGTTTGTTGTCACCCTTCTACTGTCGCACCTTAGTTGAGTTCTCCAAAAAATTTGCCTTTGAACATTGTCTAGACGTTGGTATCATAGGGTGAAGTTGAAGATTATCAAAGCTCTAAAATCGAATTCAGAAACTTCAAAGATAATCTCGATCATTATGGATCATTATCATACACCATGGCACAACCAGAATGTAAATCTTTGATGAACTGGTTATCTTCTGTTGGGGTTCTAGAACTATCATCAGTGCAAAATTTACAAACCAATGAGAGGATAGTAAAAGGTCAGTCTATTGCTTTTGATGTCTTTAGTTATCAGTAGTTTGTGGAGTCTTCTTACCTTGGTTTTCAAGCTCTCATTGTGTTATTCTAGTTCTCAAACGGCAAGAATTTGGGAATAGTGTTTGTTCATTAAATGTTTTCATGGCTAATCTCTATTTGATTGTAATTGTCTCTAATTTCTTGCTTTTATGGTGGAGGTTGTCTCGGTGCTTTCTTTTGGTCAAATTGAAACTGAAATTGGGATTCTTCTCCACATTATTTCACAAACTCGGTATTTTGGTCAGCTTGATGTTGCTATCACATTTTCTGCTTTCCTTTCTGCAATTTATTTTGTTTCTACAAAGAGGCAATCCTCGATTTTCTCAGCTGAGCGCAATATTTGGGCTTTTTACTTTGGTTATCATCCTTGTTTCTGGGTCAAACTTAACTTGTAGATTGGTCGTTCCAGCCTTAAACGCTGAAATGGGAGCAGTATGACCATTTCTTCTTGGAGCTGAGCTCACTGGACTGTTGGCGTTGTTGCAACCTCAACTTTTATGAGCAATGATGGTTTAAAGTTGGTTCATGATTTTCTTTGGAACCTTGAAGTAGCTTTCAATTTTCAGTGTTTGGTGGAAGCCTTTTCTATAGCTTCAGTTTTAGCTCTTCAAGTTTGTCCTTTCAATTTTTATTTTCATGGCTAAATCTCTATGTGGGTGTGTTTGCTGTCTTGTATTAGTCTTTTCTTTTCTTTTTCACTTCTGGGAGTTTATATCCTTCAACATTTATTTCTTATTTCTTTTCATTATAACAGGTATGCCATATATGACATCGGAGCGTTAA

mRNA sequence

ATGAAGAGCATCTGCGCTTATTATATAGATATAGATAAAGAGCAAGGGAAAGCGGTTCTTCCAATAGCACAAACCCGTGCACTCATTTTTATAATGCAAGGTTTGCTATATTATGCTTTCAGGACAATATTGTCCTACAATTTTCTGCAGAAGTCAATAAAGGGAAGTGGGAAACTTGTTCCTCAAGTTGTTAAGATTTGGGTGGAGAGAAACTTCAAAGATAATCTCGATCATTATGGATCATTATCATACACCATGGCACAACCAGAATGTAAATCTTTGATGAACTGGTTATCTTCTGTTGGGGTTCTAGAACTATCATCAGTGCAAAATTTACAAACCAATGAGAGGATAGTAAAAGGTATGCCATATATGACATCGGAGCGTTAA

Coding sequence (CDS)

ATGAAGAGCATCTGCGCTTATTATATAGATATAGATAAAGAGCAAGGGAAAGCGGTTCTTCCAATAGCACAAACCCGTGCACTCATTTTTATAATGCAAGGTTTGCTATATTATGCTTTCAGGACAATATTGTCCTACAATTTTCTGCAGAAGTCAATAAAGGGAAGTGGGAAACTTGTTCCTCAAGTTGTTAAGATTTGGGTGGAGAGAAACTTCAAAGATAATCTCGATCATTATGGATCATTATCATACACCATGGCACAACCAGAATGTAAATCTTTGATGAACTGGTTATCTTCTGTTGGGGTTCTAGAACTATCATCAGTGCAAAATTTACAAACCAATGAGAGGATAGTAAAAGGTATGCCATATATGACATCGGAGCGTTAA

Protein sequence

MKSICAYYIDIDKEQGKAVLPIAQTRALIFIMQGLLYYAFRTILSYNFLQKSIKGSGKLVPQVVKIWVERNFKDNLDHYGSLSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIVKGMPYMTSER
Homology
[Close]
BLAST of Clc05G14520 vs. NCBI nr
Match: XP_022973546.1 (mediator of RNA polymerase II transcription subunit 23 [Cucurbita maxima])

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-06
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 82  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV 120
           +SYTMAQP C+++MNWLSS GV ELSS QNLQTNERI+
Sbjct: 655 VSYTMAQPACETVMNWLSSAGVPELSSAQNLQTNERIM 692

[Close]
BLAST of Clc05G14520 vs. NCBI nr
Match: KAG6579266.1 (Mediator of RNA polymerase II transcription subunit 23, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-06
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 82  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV 120
           +SYTMAQP C+++MNWLSS GV ELSS QNLQTNERI+
Sbjct: 655 VSYTMAQPACETVMNWLSSAGVPELSSAQNLQTNERIM 692

[Close]
BLAST of Clc05G14520 vs. NCBI nr
Match: KAG7016782.1 (Mediator of RNA polymerase II transcription subunit 23 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-06
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 82  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV 120
           +SYTMAQP C+++MNWLSS GV ELSS QNLQTNERI+
Sbjct: 655 VSYTMAQPACETVMNWLSSAGVPELSSAQNLQTNERIM 692

[Close]
BLAST of Clc05G14520 vs. NCBI nr
Match: XP_022938601.1 (mediator of RNA polymerase II transcription subunit 23 [Cucurbita moschata])

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-06
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 82  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV 120
           +SYTMAQP C+++MNWLSS GV ELSS QNLQTNERI+
Sbjct: 655 VSYTMAQPACETVMNWLSSAGVPELSSAQNLQTNERIM 692

[Close]
BLAST of Clc05G14520 vs. NCBI nr
Match: XP_023551559.1 (mediator of RNA polymerase II transcription subunit 23 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-06
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 82  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV 120
           +SYTMAQP C+++MNWLSS GV ELSS QNLQTNERI+
Sbjct: 655 VSYTMAQPACETVMNWLSSAGVPELSSAQNLQTNERIM 692

[Close]
BLAST of Clc05G14520 vs. ExPASy Swiss-Prot
Match: F4I4P3 (Mediator of RNA polymerase II transcription subunit 23 OS=Arabidopsis thaliana OX=3702 GN=MED23 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 9.4e-04
Identity = 20/38 (52.63%), Postives = 29/38 (76.32%), Query Frame = 0 

Query: 82  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV 120
           +SYTMAQP C++++NWLSS G+ EL     LQ N+R++
Sbjct: 656 VSYTMAQPACETVINWLSSAGMAEL---PGLQPNDRVM 690

[Close]
BLAST of Clc05G14520 vs. ExPASy TrEMBL
Match: A0A6J1I8Y2 (mediator of RNA polymerase II transcription subunit 23 OS=Cucurbita maxima OX=3661 GN=LOC111472080 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 7.2e-07
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 82  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV 120
           +SYTMAQP C+++MNWLSS GV ELSS QNLQTNERI+
Sbjct: 655 VSYTMAQPACETVMNWLSSAGVPELSSAQNLQTNERIM 692

[Close]
BLAST of Clc05G14520 vs. ExPASy TrEMBL
Match: A0A6J1FDL6 (mediator of RNA polymerase II transcription subunit 23 OS=Cucurbita moschata OX=3662 GN=LOC111444785 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 7.2e-07
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 82  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV 120
           +SYTMAQP C+++MNWLSS GV ELSS QNLQTNERI+
Sbjct: 655 VSYTMAQPACETVMNWLSSAGVPELSSAQNLQTNERIM 692

[Close]
BLAST of Clc05G14520 vs. ExPASy TrEMBL
Match: A0A6J1CXU7 (mediator of RNA polymerase II transcription subunit 23 OS=Momordica charantia OX=3673 GN=LOC111015577 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-06
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 82  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV 120
           +SYTMAQP C+++MNWLSS GV ELSS QNLQTNER++
Sbjct: 654 VSYTMAQPACETVMNWLSSAGVPELSSAQNLQTNERMM 691

[Close]
BLAST of Clc05G14520 vs. ExPASy TrEMBL
Match: A0A5A7TSF1 (Mediator of RNA polymerase II transcription subunit 23 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00510 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.7e-06
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 82  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV 120
           +SYTMAQP C+++MNWL+S G  ELSS QNLQTNERI+
Sbjct: 654 VSYTMAQPACETVMNWLTSAGAPELSSAQNLQTNERIM 691

[Close]
BLAST of Clc05G14520 vs. ExPASy TrEMBL
Match: A0A0A0KPD2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G564790 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.7e-06
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 82  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV 120
           +SYTMAQP C+++MNWL+S G  ELSS QNLQTNERI+
Sbjct: 12  VSYTMAQPACETVMNWLTSAGAPELSSAQNLQTNERIM 49

[Close]
BLAST of Clc05G14520 vs. TAIR 10
Match: AT1G23230.1 (CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629); Has 187 Blast hits to 184 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 6.7e-05
Identity = 20/38 (52.63%), Postives = 29/38 (76.32%), Query Frame = 0 

Query: 82  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV 120
           +SYTMAQP C++++NWLSS G+ EL     LQ N+R++
Sbjct: 656 VSYTMAQPACETVINWLSSAGMAEL---PGLQPNDRVM 690

[Close]
BLAST of Clc05G14520 vs. TAIR 10
Match: AT1G23230.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629). )

HSP 1 Score: 44.7 bits (104), Expect = 6.7e-05
Identity = 20/38 (52.63%), Postives = 29/38 (76.32%), Query Frame = 0 

Query: 82  LSYTMAQPECKSLMNWLSSVGVLELSSVQNLQTNERIV 120
           +SYTMAQP C++++NWLSS G+ EL     LQ N+R++
Sbjct: 637 VSYTMAQPACETVINWLSSAGMAEL---PGLQPNDRVM 671

The following BLAST results are available for this feature:
BLAST of Clc05G14520 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022973546.11.5e-0676.32mediator of RNA polymerase II transcription subunit 23 [Cucurbita maxima][more]
KAG6579266.11.5e-0676.32Mediator of RNA polymerase II transcription subunit 23, partial [Cucurbita argyr... [more]
KAG7016782.11.5e-0676.32Mediator of RNA polymerase II transcription subunit 23 [Cucurbita argyrosperma s... [more]
XP_022938601.11.5e-0676.32mediator of RNA polymerase II transcription subunit 23 [Cucurbita moschata][more]
XP_023551559.11.5e-0676.32mediator of RNA polymerase II transcription subunit 23 [Cucurbita pepo subsp. pe... [more]
BLAST of Clc05G14520 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4I4P39.4e-0452.63Mediator of RNA polymerase II transcription subunit 23 OS=Arabidopsis thaliana O... [more]
BLAST of Clc05G14520 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I8Y27.2e-0776.32mediator of RNA polymerase II transcription subunit 23 OS=Cucurbita maxima OX=36... [more]
A0A6J1FDL67.2e-0776.32mediator of RNA polymerase II transcription subunit 23 OS=Cucurbita moschata OX=... [more]
A0A6J1CXU71.6e-0673.68mediator of RNA polymerase II transcription subunit 23 OS=Momordica charantia OX... [more]
A0A5A7TSF14.7e-0671.05Mediator of RNA polymerase II transcription subunit 23 isoform X1 OS=Cucumis mel... [more]
A0A0A0KPD24.7e-0671.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G564790 PE=3 SV=1[more]
BLAST of Clc05G14520 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G23230.16.7e-0552.63CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629);... [more]
AT1G23230.26.7e-0552.63FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; ... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc05G14520.1Clc05G14520.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus