Clc05G08630 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTCTGCCATATTATCACTACACACACACATACACAGCTTCCAATTACCATTAATTCCACAATCTATCTTTATCTCTATCTCTCCCTTGAAAAAGGCTTAGAAAAGCCAAGAGATCTAGAAAGAAAAAAGAAGCAGAGCATTGTTATTAGTATTATTTGAAGTGTTTGGAGGAGTTGGGAAATCAGTTTGTGAAAGAAAAAGGAAGGGAATATTTATGGGTGGAAGATCAAAGTCTTTGAAGTGCTTTTCAATTTGCAGCATATTTAAAAGCTGTTGTTTCCCAATGGGAGGAAGAGATTATGGGAATGAATACGAAGGTAATTATTTTGATGAAAGTGGTGAAATTAAAAGAAGGATGTGGCCAAGTGATGAAGATAGAGGAAGCAGATGGGTAGCTGAGCCCGGAATTGATCGTAAAGCTTCTGCTTTTATTGCTAGATTCTATGAAGCTCGTGTTTCTGACCCAGAACGCCAAACCTTTTCTCTTTAATTTAATTATTAATATCAATCCCCTTTTTTTTTTCTTCTTCTTCTTCTTTTTAAATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC CTCTGCCATATTATCACTACACACACACATACACAGCTTCCAATTACCATTAATTCCACAATCTATCTTTATCTCTATCTCTCCCTTGAAAAAGGCTTAGAAAAGCCAAGAGATCTAGAAAGAAAAAAGAAGCAGAGCATTGTTATTAGTATTATTTGAAGTGTTTGGAGGAGTTGGGAAATCAGTTTGTGAAAGAAAAAGGAAGGGAATATTTATGGGTGGAAGATCAAAGTCTTTGAAGTGCTTTTCAATTTGCAGCATATTTAAAAGCTGTTGTTTCCCAATGGGAGGAAGAGATTATGGGAATGAATACGAAGGTAATTATTTTGATGAAAGTGGTGAAATTAAAAGAAGGATGTGGCCAAGTGATGAAGATAGAGGAAGCAGATGGGTAGCTGAGCCCGGAATTGATCGTAAAGCTTCTGCTTTTATTGCTAGATTCTATGAAGCTCGTGTTTCTGACCCAGAACGCCAAACCTTTTCTCTTTAATTTAATTATTAATATCAATCCCCTTTTTTTTTTCTTCTTCTTCTTCTTTTTAAATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC ATGGGTGGAAGATCAAAGTCTTTGAAGTGCTTTTCAATTTGCAGCATATTTAAAAGCTGTTGTTTCCCAATGGGAGGAAGAGATTATGGGAATGAATACGAAGGTAATTATTTTGATGAAAGTGGTGAAATTAAAAGAAGGATGTGGCCAAGTGATGAAGATAGAGGAAGCAGATGGGTAGCTGAGCCCGGAATTGATCGTAAAGCTTCTGCTTTTATTGCTAGATTCTATGAAGCTCGTGTTTCTGACCCAGAACGCCAAACCTTTTCTCTTTAA MGGRSKSLKCFSICSIFKSCCFPMGGRDYGNEYEGNYFDESGEIKRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPERQTFSL Homology
BLAST of Clc05G08630 vs. NCBI nr
Match: KAG7029045.1 (hypothetical protein SDJN02_10228, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 149.4 bits (376), Expect = 1.5e-32 Identity = 73/91 (80.22%), Postives = 79/91 (86.81%), Query Frame = 0
BLAST of Clc05G08630 vs. NCBI nr
Match: XP_022935735.1 (uncharacterized protein LOC111442555 [Cucurbita moschata] >XP_023540304.1 uncharacterized protein LOC111800720 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 148.3 bits (373), Expect = 3.2e-32 Identity = 72/91 (79.12%), Postives = 79/91 (86.81%), Query Frame = 0
BLAST of Clc05G08630 vs. NCBI nr
Match: XP_022138231.1 (uncharacterized protein LOC111009454 [Momordica charantia]) HSP 1 Score: 147.5 bits (371), Expect = 5.5e-32 Identity = 73/91 (80.22%), Postives = 80/91 (87.91%), Query Frame = 0
BLAST of Clc05G08630 vs. NCBI nr
Match: KGN57246.2 (hypothetical protein Csa_023700, partial [Cucumis sativus]) HSP 1 Score: 143.7 bits (361), Expect = 8.0e-31 Identity = 69/77 (89.61%), Postives = 73/77 (94.81%), Query Frame = 0
BLAST of Clc05G08630 vs. NCBI nr
Match: KAG6582136.1 (hypothetical protein SDJN03_22138, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 142.1 bits (357), Expect = 2.3e-30 Identity = 68/91 (74.73%), Postives = 76/91 (83.52%), Query Frame = 0
BLAST of Clc05G08630 vs. ExPASy TrEMBL
Match: A0A6J1FBH6 (uncharacterized protein LOC111442555 OS=Cucurbita moschata OX=3662 GN=LOC111442555 PE=4 SV=1) HSP 1 Score: 148.3 bits (373), Expect = 1.6e-32 Identity = 72/91 (79.12%), Postives = 79/91 (86.81%), Query Frame = 0
BLAST of Clc05G08630 vs. ExPASy TrEMBL
Match: A0A6J1C955 (uncharacterized protein LOC111009454 OS=Momordica charantia OX=3673 GN=LOC111009454 PE=4 SV=1) HSP 1 Score: 147.5 bits (371), Expect = 2.7e-32 Identity = 73/91 (80.22%), Postives = 80/91 (87.91%), Query Frame = 0
BLAST of Clc05G08630 vs. ExPASy TrEMBL
Match: A0A0A0LAW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171730 PE=4 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 3.1e-28 Identity = 63/69 (91.30%), Postives = 67/69 (97.10%), Query Frame = 0
BLAST of Clc05G08630 vs. ExPASy TrEMBL
Match: A0A5A7U8R2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1769G00130 PE=4 SV=1) HSP 1 Score: 128.6 bits (322), Expect = 1.3e-26 Identity = 59/68 (86.76%), Postives = 64/68 (94.12%), Query Frame = 0
BLAST of Clc05G08630 vs. ExPASy TrEMBL
Match: E5GC50 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1) HSP 1 Score: 128.6 bits (322), Expect = 1.3e-26 Identity = 59/68 (86.76%), Postives = 64/68 (94.12%), Query Frame = 0
BLAST of Clc05G08630 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 70.1 bits (170), Expect = 1.0e-12 Identity = 47/92 (51.09%), Postives = 60/92 (65.22%), Query Frame = 0
BLAST of Clc05G08630 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 62.8 bits (151), Expect = 1.7e-10 Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 0
BLAST of Clc05G08630 vs. TAIR 10
Match: AT1G48325.1 (Expressed protein ) HSP 1 Score: 47.8 bits (112), Expect = 5.6e-06 Identity = 30/85 (35.29%), Postives = 46/85 (54.12%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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