Clc05G08630 (gene) Watermelon (cordophanus) v2

Overview
NameClc05G08630
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr05: 6709915 .. 6710544 (-)
RNA-Seq ExpressionClc05G08630
SyntenyClc05G08630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTGCCATATTATCACTACACACACACATACACAGCTTCCAATTACCATTAATTCCACAATCTATCTTTATCTCTATCTCTCCCTTGAAAAAGGCTTAGAAAAGCCAAGAGATCTAGAAAGAAAAAAGAAGCAGAGCATTGTTATTAGTATTATTTGAAGTGTTTGGAGGAGTTGGGAAATCAGTTTGTGAAAGAAAAAGGAAGGGAATATTTATGGGTGGAAGATCAAAGTCTTTGAAGTGCTTTTCAATTTGCAGCATATTTAAAAGCTGTTGTTTCCCAATGGGAGGAAGAGATTATGGGAATGAATACGAAGGTAATTATTTTGATGAAAGTGGTGAAATTAAAAGAAGGATGTGGCCAAGTGATGAAGATAGAGGAAGCAGATGGGTAGCTGAGCCCGGAATTGATCGTAAAGCTTCTGCTTTTATTGCTAGATTCTATGAAGCTCGTGTTTCTGACCCAGAACGCCAAACCTTTTCTCTTTAATTTAATTATTAATATCAATCCCCTTTTTTTTTTCTTCTTCTTCTTCTTTTTAAATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC

mRNA sequence

CTCTGCCATATTATCACTACACACACACATACACAGCTTCCAATTACCATTAATTCCACAATCTATCTTTATCTCTATCTCTCCCTTGAAAAAGGCTTAGAAAAGCCAAGAGATCTAGAAAGAAAAAAGAAGCAGAGCATTGTTATTAGTATTATTTGAAGTGTTTGGAGGAGTTGGGAAATCAGTTTGTGAAAGAAAAAGGAAGGGAATATTTATGGGTGGAAGATCAAAGTCTTTGAAGTGCTTTTCAATTTGCAGCATATTTAAAAGCTGTTGTTTCCCAATGGGAGGAAGAGATTATGGGAATGAATACGAAGGTAATTATTTTGATGAAAGTGGTGAAATTAAAAGAAGGATGTGGCCAAGTGATGAAGATAGAGGAAGCAGATGGGTAGCTGAGCCCGGAATTGATCGTAAAGCTTCTGCTTTTATTGCTAGATTCTATGAAGCTCGTGTTTCTGACCCAGAACGCCAAACCTTTTCTCTTTAATTTAATTATTAATATCAATCCCCTTTTTTTTTTCTTCTTCTTCTTCTTTTTAAATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC

Coding sequence (CDS)

ATGGGTGGAAGATCAAAGTCTTTGAAGTGCTTTTCAATTTGCAGCATATTTAAAAGCTGTTGTTTCCCAATGGGAGGAAGAGATTATGGGAATGAATACGAAGGTAATTATTTTGATGAAAGTGGTGAAATTAAAAGAAGGATGTGGCCAAGTGATGAAGATAGAGGAAGCAGATGGGTAGCTGAGCCCGGAATTGATCGTAAAGCTTCTGCTTTTATTGCTAGATTCTATGAAGCTCGTGTTTCTGACCCAGAACGCCAAACCTTTTCTCTTTAA

Protein sequence

MGGRSKSLKCFSICSIFKSCCFPMGGRDYGNEYEGNYFDESGEIKRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPERQTFSL
Homology
BLAST of Clc05G08630 vs. NCBI nr
Match: KAG7029045.1 (hypothetical protein SDJN02_10228, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.4 bits (376), Expect = 1.5e-32
Identity = 73/91 (80.22%), Postives = 79/91 (86.81%), Query Frame = 0

Query: 1  MGGRSKSLKCFSICSIFKSCCFPMGGRDYGNEYEGNYFDESGEIKRRMWPSDEDRGSRWV 60
          MGGRSKS+KCFSICSIFKSCCF  GGRD G      Y+DESGEI+RRMWPSDED  +RWV
Sbjct: 1  MGGRSKSMKCFSICSIFKSCCFSKGGRDEG------YWDESGEIRRRMWPSDED--TRWV 60

Query: 61 AEPGIDRKASAFIARFYEARVSDPERQTFSL 92
          AEPGIDRKASAFIARFY+ARVSDPERQT S+
Sbjct: 61 AEPGIDRKASAFIARFYDARVSDPERQTLSV 83

BLAST of Clc05G08630 vs. NCBI nr
Match: XP_022935735.1 (uncharacterized protein LOC111442555 [Cucurbita moschata] >XP_023540304.1 uncharacterized protein LOC111800720 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 148.3 bits (373), Expect = 3.2e-32
Identity = 72/91 (79.12%), Postives = 79/91 (86.81%), Query Frame = 0

Query: 1  MGGRSKSLKCFSICSIFKSCCFPMGGRDYGNEYEGNYFDESGEIKRRMWPSDEDRGSRWV 60
          MGGRSKS+KCFSICSIFKSCCF  GGRD G      Y+DESGEI+RRMWPSDED  +RWV
Sbjct: 1  MGGRSKSMKCFSICSIFKSCCFSKGGRDEG------YWDESGEIRRRMWPSDED--TRWV 60

Query: 61 AEPGIDRKASAFIARFYEARVSDPERQTFSL 92
          AEPGIDRKASAFIARFY+ARVSDPERQT ++
Sbjct: 61 AEPGIDRKASAFIARFYDARVSDPERQTLAV 83

BLAST of Clc05G08630 vs. NCBI nr
Match: XP_022138231.1 (uncharacterized protein LOC111009454 [Momordica charantia])

HSP 1 Score: 147.5 bits (371), Expect = 5.5e-32
Identity = 73/91 (80.22%), Postives = 80/91 (87.91%), Query Frame = 0

Query: 1  MGGRSKSLKCFSICSIFKSCCFPMGGRDYGNEYEGNYFDESGEIKRRMWPSDEDRGSRWV 60
          MGGR KS KCFSICSI KSCCFPMGGR   +  +G Y+DES EI+RRMWPSDEDRG RWV
Sbjct: 1  MGGR-KSSKCFSICSILKSCCFPMGGR---SSEDGGYWDESAEIRRRMWPSDEDRG-RWV 60

Query: 61 AEPGIDRKASAFIARFYEARVSDPERQTFSL 92
          AEPGIDRKASAFIARFYEARVSDP+RQTF++
Sbjct: 61 AEPGIDRKASAFIARFYEARVSDPQRQTFAV 86

BLAST of Clc05G08630 vs. NCBI nr
Match: KGN57246.2 (hypothetical protein Csa_023700, partial [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 8.0e-31
Identity = 69/77 (89.61%), Postives = 73/77 (94.81%), Query Frame = 0

Query: 16 IFKSCCFPMGGRDYGNEYEGNYF-DESGEIKRRMWPSDEDRGSRWVAEPGIDRKASAFIA 75
          I KSCCF MGGRDYGN+YEG+YF D+SGEI+RRMWPSDEDRGSRWVAEPGIDRKASAFIA
Sbjct: 1  ILKSCCF-MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIA 60

Query: 76 RFYEARVSDPERQTFSL 92
          RFYEARVSDPERQT SL
Sbjct: 61 RFYEARVSDPERQTLSL 76

BLAST of Clc05G08630 vs. NCBI nr
Match: KAG6582136.1 (hypothetical protein SDJN03_22138, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142.1 bits (357), Expect = 2.3e-30
Identity = 68/91 (74.73%), Postives = 76/91 (83.52%), Query Frame = 0

Query: 1  MGGRSKSLKCFSICSIFKSCCFPMGGRDYGNEYEGNYFDESGEIKRRMWPSDEDRGSRWV 60
          MGGRSKSLKCFSICSI KSCCFPM G   G + +  Y+DES EI+RRMWPSD+D   RWV
Sbjct: 1  MGGRSKSLKCFSICSILKSCCFPMVG---GRDNDEAYWDESAEIRRRMWPSDQDSRGRWV 60

Query: 61 AEPGIDRKASAFIARFYEARVSDPERQTFSL 92
          AEPGIDRKAS FIARFYE+RVSD ERQTF++
Sbjct: 61 AEPGIDRKASDFIARFYESRVSDSERQTFAV 88

BLAST of Clc05G08630 vs. ExPASy TrEMBL
Match: A0A6J1FBH6 (uncharacterized protein LOC111442555 OS=Cucurbita moschata OX=3662 GN=LOC111442555 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.6e-32
Identity = 72/91 (79.12%), Postives = 79/91 (86.81%), Query Frame = 0

Query: 1  MGGRSKSLKCFSICSIFKSCCFPMGGRDYGNEYEGNYFDESGEIKRRMWPSDEDRGSRWV 60
          MGGRSKS+KCFSICSIFKSCCF  GGRD G      Y+DESGEI+RRMWPSDED  +RWV
Sbjct: 1  MGGRSKSMKCFSICSIFKSCCFSKGGRDEG------YWDESGEIRRRMWPSDED--TRWV 60

Query: 61 AEPGIDRKASAFIARFYEARVSDPERQTFSL 92
          AEPGIDRKASAFIARFY+ARVSDPERQT ++
Sbjct: 61 AEPGIDRKASAFIARFYDARVSDPERQTLAV 83

BLAST of Clc05G08630 vs. ExPASy TrEMBL
Match: A0A6J1C955 (uncharacterized protein LOC111009454 OS=Momordica charantia OX=3673 GN=LOC111009454 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.7e-32
Identity = 73/91 (80.22%), Postives = 80/91 (87.91%), Query Frame = 0

Query: 1  MGGRSKSLKCFSICSIFKSCCFPMGGRDYGNEYEGNYFDESGEIKRRMWPSDEDRGSRWV 60
          MGGR KS KCFSICSI KSCCFPMGGR   +  +G Y+DES EI+RRMWPSDEDRG RWV
Sbjct: 1  MGGR-KSSKCFSICSILKSCCFPMGGR---SSEDGGYWDESAEIRRRMWPSDEDRG-RWV 60

Query: 61 AEPGIDRKASAFIARFYEARVSDPERQTFSL 92
          AEPGIDRKASAFIARFYEARVSDP+RQTF++
Sbjct: 61 AEPGIDRKASAFIARFYEARVSDPQRQTFAV 86

BLAST of Clc05G08630 vs. ExPASy TrEMBL
Match: A0A0A0LAW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171730 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.1e-28
Identity = 63/69 (91.30%), Postives = 67/69 (97.10%), Query Frame = 0

Query: 24 MGGRDYGNEYEGNYF-DESGEIKRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 83
          MGGRDYGN+YEG+YF D+SGEI+RRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS
Sbjct: 1  MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60

Query: 84 DPERQTFSL 92
          DPERQT SL
Sbjct: 61 DPERQTLSL 69

BLAST of Clc05G08630 vs. ExPASy TrEMBL
Match: A0A5A7U8R2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1769G00130 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-26
Identity = 59/68 (86.76%), Postives = 64/68 (94.12%), Query Frame = 0

Query: 24 MGGRDYGNEYEGNYFDESGEIKRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD 83
          MGGRDYGN+Y G + D+SGE++RRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD
Sbjct: 1  MGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD 60

Query: 84 PERQTFSL 92
          PERQT SL
Sbjct: 61 PERQTLSL 68

BLAST of Clc05G08630 vs. ExPASy TrEMBL
Match: E5GC50 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-26
Identity = 59/68 (86.76%), Postives = 64/68 (94.12%), Query Frame = 0

Query: 24 MGGRDYGNEYEGNYFDESGEIKRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD 83
          MGGRDYGN+Y G + D+SGE++RRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD
Sbjct: 1  MGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD 60

Query: 84 PERQTFSL 92
          PERQT SL
Sbjct: 61 PERQTLSL 68

BLAST of Clc05G08630 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 70.1 bits (170), Expect = 1.0e-12
Identity = 47/92 (51.09%), Postives = 60/92 (65.22%), Query Frame = 0

Query: 1  MGG--RSKSLKCFSICSIFKSCCFPMGGRDYGNEYEGNYFDESGEIKRRMWPSDEDRGSR 60
          MGG  RS S K FS+ S FK+       R +  E +G++ D+ G  ++ M  SDED+   
Sbjct: 1  MGGKNRSHSSKRFSLFSFFKT------RRSHRVEADGSW-DDFGYTRKAM-ASDEDK-RY 60

Query: 61 WVAEPGIDRKASAFIARFYEARVSDPERQTFS 91
          WVAEPGIDRKASAFIA+F+  RVS+ ERQT S
Sbjct: 61 WVAEPGIDRKASAFIAKFHATRVSESERQTLS 83

BLAST of Clc05G08630 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-10
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 0

Query: 46 RRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPERQT 89
          R+ W SDED+   WVAEPGIDRKASAFIA+F+ +RVS+ ERQT
Sbjct: 24 RKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSESERQT 65

BLAST of Clc05G08630 vs. TAIR 10
Match: AT1G48325.1 (Expressed protein )

HSP 1 Score: 47.8 bits (112), Expect = 5.6e-06
Identity = 30/85 (35.29%), Postives = 46/85 (54.12%), Query Frame = 0

Query: 1  MGGRSKSLKCFSICSIFKSCCFPMGGRDYGNEYEGNYFDESGEIKRRMWPSDEDRGSRWV 60
          MGG  +  K  S  S+ KS  F    ++  N  E    +    ++ R+  +D+D  S  +
Sbjct: 3  MGGHGRRRKSSSSFSVVKS-LFARCSKEKDNWNEERMIN----VRPRIMTTDDDGCSWTI 62

Query: 61 AEPGIDRKASAFIARFYEARVSDPE 86
          AEP IDR+A+AFIA+F+E  + D E
Sbjct: 63 AEPCIDRRATAFIAKFHETPIQDTE 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7029045.11.5e-3280.22hypothetical protein SDJN02_10228, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022935735.13.2e-3279.12uncharacterized protein LOC111442555 [Cucurbita moschata] >XP_023540304.1 unchar... [more]
XP_022138231.15.5e-3280.22uncharacterized protein LOC111009454 [Momordica charantia][more]
KGN57246.28.0e-3189.61hypothetical protein Csa_023700, partial [Cucumis sativus][more]
KAG6582136.12.3e-3074.73hypothetical protein SDJN03_22138, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FBH61.6e-3279.12uncharacterized protein LOC111442555 OS=Cucurbita moschata OX=3662 GN=LOC1114425... [more]
A0A6J1C9552.7e-3280.22uncharacterized protein LOC111009454 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A0A0LAW13.1e-2891.30Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171730 PE=4 SV=1[more]
A0A5A7U8R21.3e-2686.76Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
E5GC501.3e-2686.76Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G05858.11.0e-1251.09unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G26620.11.7e-1069.77unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G48325.15.6e-0635.29Expressed protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33511:SF23SUBFAMILY NOT NAMEDcoord: 2..91
NoneNo IPR availablePANTHERPTHR33511OS06G0632400 PROTEINcoord: 2..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc05G08630.1Clc05G08630.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006897 endocytosis