Clc05G02850 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGCCATTCTTCGCGATTCATCCTCACTCCTTCCTATTTAGCTTGTCGCCATCGCCGCCGTCCTATTCGAGTCTACCGACTCTTGAGGTGATTGATTTGATTTTCTTCTTTCTTCTTTCTTCTTTCTTCTTCGTTTTCTCTGAATTTGTTATTTACAGAGTTTGTGGATTCGTTTTCAGGAGGATGAGATTCGCGAAGGAAGAGGTTGAGAAAGAAATGGAGATAAAGAATTTGAAATTGTACATGGAGAATCAAAGCATTATTGAAGAGAACGAGAGATTGAGAAAGAAAGCGTTTCTTCTTCATAAAGAGAATCAGGTTTTGTTATCTCAACTCCAGAATTTCTCCAACCATAAACCACCGCAGTCTAGCTCCGATTTGAGTGTCTGCGGCCGGGAAATTAAACAAAATCATCTGTAA ATGTGCCATTCTTCGCGATTCATCCTCACTCCTTCCTATTTAGCTTGTCGCCATCGCCGCCGTCCTATTCGAGTCTACCGACTCTTGAGGAGGATGAGATTCGCGAAGGAAGAGGTTGAGAAAGAAATGGAGATAAAGAATTTGAAATTGTACATGGAGAATCAAAGCATTATTGAAGAGAACGAGAGATTGAGAAAGAAAGCGTTTCTTCTTCATAAAGAGAATCAGGTTTTGTTATCTCAACTCCAGAATTTCTCCAACCATAAACCACCGCAGTCTAGCTCCGATTTGAGTGTCTGCGGCCGGGAAATTAAACAAAATCATCTGTAA ATGTGCCATTCTTCGCGATTCATCCTCACTCCTTCCTATTTAGCTTGTCGCCATCGCCGCCGTCCTATTCGAGTCTACCGACTCTTGAGGAGGATGAGATTCGCGAAGGAAGAGGTTGAGAAAGAAATGGAGATAAAGAATTTGAAATTGTACATGGAGAATCAAAGCATTATTGAAGAGAACGAGAGATTGAGAAAGAAAGCGTTTCTTCTTCATAAAGAGAATCAGGTTTTGTTATCTCAACTCCAGAATTTCTCCAACCATAAACCACCGCAGTCTAGCTCCGATTTGAGTGTCTGCGGCCGGGAAATTAAACAAAATCATCTGTAA MCHSSRFILTPSYLACRHRRRPIRVYRLLRRMRFAKEEVEKEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQNFSNHKPPQSSSDLSVCGREIKQNHL Homology
BLAST of Clc05G02850 vs. NCBI nr
Match: XP_038901104.1 (protein LITTLE ZIPPER 1-like [Benincasa hispida]) HSP 1 Score: 193.7 bits (491), Expect = 8.1e-46 Identity = 100/109 (91.74%), Postives = 104/109 (95.41%), Query Frame = 0
BLAST of Clc05G02850 vs. NCBI nr
Match: KGN56585.1 (hypothetical protein Csa_011002 [Cucumis sativus]) HSP 1 Score: 172.6 bits (436), Expect = 1.9e-39 Identity = 96/115 (83.48%), Postives = 100/115 (86.96%), Query Frame = 0
BLAST of Clc05G02850 vs. NCBI nr
Match: XP_022924351.1 (protein LITTLE ZIPPER 1-like [Cucurbita moschata] >KAG6582570.1 Protein LITTLE ZIPPER 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018954.1 Protein LITTLE ZIPPER 2, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 138.7 bits (348), Expect = 3.1e-29 Identity = 83/103 (80.58%), Postives = 86/103 (83.50%), Query Frame = 0
BLAST of Clc05G02850 vs. NCBI nr
Match: XP_023527865.1 (protein LITTLE ZIPPER 1-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 137.5 bits (345), Expect = 6.9e-29 Identity = 80/100 (80.00%), Postives = 83/100 (83.00%), Query Frame = 0
BLAST of Clc05G02850 vs. NCBI nr
Match: XP_022980450.1 (protein LITTLE ZIPPER 1-like [Cucurbita maxima]) HSP 1 Score: 137.1 bits (344), Expect = 9.0e-29 Identity = 82/103 (79.61%), Postives = 85/103 (82.52%), Query Frame = 0
BLAST of Clc05G02850 vs. ExPASy Swiss-Prot
Match: F4IG60 (Protein LITTLE ZIPPER 1 OS=Arabidopsis thaliana OX=3702 GN=ZPR1 PE=1 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 2.2e-09 Identity = 45/86 (52.33%), Postives = 59/86 (68.60%), Query Frame = 0
BLAST of Clc05G02850 vs. ExPASy Swiss-Prot
Match: Q9LZX5 (Protein LITTLE ZIPPER 2 OS=Arabidopsis thaliana OX=3702 GN=ZPR2 PE=1 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 1.1e-08 Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 0
BLAST of Clc05G02850 vs. ExPASy TrEMBL
Match: A0A0A0L3S0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G125520 PE=4 SV=1) HSP 1 Score: 172.6 bits (436), Expect = 9.3e-40 Identity = 96/115 (83.48%), Postives = 100/115 (86.96%), Query Frame = 0
BLAST of Clc05G02850 vs. ExPASy TrEMBL
Match: A0A6J1E9A8 (protein LITTLE ZIPPER 1-like OS=Cucurbita moschata OX=3662 GN=LOC111431869 PE=4 SV=1) HSP 1 Score: 138.7 bits (348), Expect = 1.5e-29 Identity = 83/103 (80.58%), Postives = 86/103 (83.50%), Query Frame = 0
BLAST of Clc05G02850 vs. ExPASy TrEMBL
Match: A0A6J1IWC5 (protein LITTLE ZIPPER 1-like OS=Cucurbita maxima OX=3661 GN=LOC111479815 PE=4 SV=1) HSP 1 Score: 137.1 bits (344), Expect = 4.3e-29 Identity = 82/103 (79.61%), Postives = 85/103 (82.52%), Query Frame = 0
BLAST of Clc05G02850 vs. ExPASy TrEMBL
Match: A0A6J1IF90 (protein LITTLE ZIPPER 3-like OS=Cucurbita maxima OX=3661 GN=LOC111472719 PE=4 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 9.1e-27 Identity = 78/103 (75.73%), Postives = 86/103 (83.50%), Query Frame = 0
BLAST of Clc05G02850 vs. ExPASy TrEMBL
Match: A0A6J1F7Z1 (protein LITTLE ZIPPER 3-like OS=Cucurbita moschata OX=3662 GN=LOC111442972 PE=4 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 2.6e-26 Identity = 78/103 (75.73%), Postives = 84/103 (81.55%), Query Frame = 0
BLAST of Clc05G02850 vs. TAIR 10
Match: AT2G45450.1 (protein binding ) HSP 1 Score: 63.2 bits (152), Expect = 1.5e-10 Identity = 45/86 (52.33%), Postives = 59/86 (68.60%), Query Frame = 0
BLAST of Clc05G02850 vs. TAIR 10
Match: AT3G60890.1 (protein binding ) HSP 1 Score: 60.8 bits (146), Expect = 7.6e-10 Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 0
BLAST of Clc05G02850 vs. TAIR 10
Match: AT3G60890.2 (protein binding ) HSP 1 Score: 57.4 bits (137), Expect = 8.4e-09 Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 0
BLAST of Clc05G02850 vs. TAIR 10
Match: AT3G52770.1 (protein binding ) HSP 1 Score: 44.3 bits (103), Expect = 7.4e-05 Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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