Clc05G01380 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G01380
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	photosynthetic NDH subunit of lumenal location 2, chloroplastic
Location	ClcChr05: 898071 .. 899878 (+)
RNA-Seq Expression	Clc05G01380
Synteny	Clc05G01380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATGGATATAAAAACTAATTTTAAGTTTATAATTTTGGGATTTAAACTTAGGGGAGTTACCGCACATAAGTTTATAGAAGATAGTGGGAGAAAGTGATAAAACTTAAGGTTGTGAATGAATGGAAGCAGATAAGAAAGTAAGGCATGCAAGGCCCACAGAGTGTGTGTGTGTTTTTCCTATGGAAATGAAAGGCAAGAAGCCAAAAGTTTTATCTCCAAAGCCATGCCTGCCTTTGCCAATGTCACCACCCTCTTCTCCTCTTGCATTTCCGCTCCCCACAAATGCCGCCACCACCACTTTCCTGTCATCACCGCCTCCCTTTGCGTCCACCGCCGCCATATCGCAACCGCCCTCGCGGCACTGGTGGGGCTGCAGGCCACAGCACCGCCCCTTGCGCTAGCCCAAAGTTGGGGCACCCGCTCGTTCATTAAGGAGCGGTACTTCGAGCCCGGGCTGTCGGCGGAGGAGGCGGTGGCGAGGATAAGGCAAACGGCTGAAGGGCTTCACAGCATTCGTGAGATGTTGGAAACGATGTCATGGAGATATGTGATCTTCTACATTCGTTTGAAGTCGGCTTATCTGTCACAAGACTTGAAAACTGCCATGTCTGTTTTGCCACAAGCTCGCCAAAATGACTTTGTTAACACTGCTAATGAACTGGTCGATAACATGGCTGAGGTATGCACTTTTGTTACTATTTCATTTTACTACTGTTTCATAATCTACAGTTTTATACCATATAGAAAATGGTGAATTTATATTACACTTTCAGTTATTAACAAGTCAAGTTTTTGATATTCTAAACATATGTAACCGATTAAATTTATTTGTGTTTTGATTATTAATCAGGGGAAATTGTTTGAATCTAATCTCAAATTTTGATTTTTTTTTCTTTGGTTAAAATATCATTTTGGTCTAAATAATTTAAAGATGGTTCAATTTTTTAATCCAAATAATTTCAAGAAAATTTAAATATAGTTTTTTTATTTATAAGCATCTTTACTTCAAAATTTGAAAACATATTCACATGTTATATTTTCTTACATGATAATTATTATTATTATTTAATTAATTTCTATAAAAATTAAGGGCAGTTGTTTGGCAGTTTTTCCTAAATAAAGAATGTGGGTGGAGATCATATGGGGTTCACGAAGTTAGAAAATGGTCAATTAAGATGGCACAAATTTCTGTATTAATATGGGAATAACATAATAGACAAAATAGATAAACAACATTCAAATGTCAATAAATGTTTCTAACTTGAGGTGTAGGTAGGCAAAGTATATATTCTCATAAATTTAGTCCATAGTCTAATGGATTAGTTTGATATTTCTGATTGTCATTCAACTTTGAATTGATGTTTCAGTTGGATTATTACGTTCGTACACCAAAGGTGTATGAGTCGTATTTGTATTACGAAAAGACACTGAAATCCATTGATGATCTGGTGGCTTTACTAGCATAACTGCAAATAATTTCTTACAATCTTCCTTCATCACAGACATCAAAAGGAAGACTTGATCTTGCAAGATTTGAATGTGTTGTTTTGAGATTTTATAGTTTTTTATTATATAAATACATGTGTAAAAAAGATTATTCAACATTAGTAATTAATGTTTAAATTATTTATTTCGTTTTAAAAAATGAATACTTCTTAGCTACTTGGATACACTAATTATATTTTTAATTCGTAACTGAATAATTTGTCAATGATGAATGGGATTGAGAAGGAAGGAAATGAACCAGTATAAGCTTGTAATAAGTAATATGAAAAAAAATATATACCCTTTTTGTTCGTGAGTTTCAA

mRNA sequence

TATGGATATAAAAACTAATTTTAAGTTTATAATTTTGGGATTTAAACTTAGGGGAGTTACCGCACATAAGTTTATAGAAGATAGTGGGAGAAAGTGATAAAACTTAAGGTTGTGAATGAATGGAAGCAGATAAGAAAGTAAGGCATGCAAGGCCCACAGAGTGTGTGTGTGTTTTTCCTATGGAAATGAAAGGCAAGAAGCCAAAAGTTTTATCTCCAAAGCCATGCCTGCCTTTGCCAATGTCACCACCCTCTTCTCCTCTTGCATTTCCGCTCCCCACAAATGCCGCCACCACCACTTTCCTGTCATCACCGCCTCCCTTTGCGTCCACCGCCGCCATATCGCAACCGCCCTCGCGGCACTGGTGGGGCTGCAGGCCACAGCACCGCCCCTTGCGCTAGCCCAAAGTTGGGGCACCCGCTCGTTCATTAAGGAGCGGTACTTCGAGCCCGGGCTGTCGGCGGAGGAGGCGGTGGCGAGGATAAGGCAAACGGCTGAAGGGCTTCACAGCATTCGTGAGATGTTGGAAACGATGTCATGGAGATATGTGATCTTCTACATTCGTTTGAAGTCGGCTTATCTGTCACAAGACTTGAAAACTGCCATGTCTGTTTTGCCACAAGCTCGCCAAAATGACTTTGTTAACACTGCTAATGAACTGGTCGATAACATGGCTGAGTTGGATTATTACGTTCGTACACCAAAGGTGTATGAGTCGTATTTGTATTACGAAAAGACACTGAAATCCATTGATGATCTGGTGGCTTTACTAGCATAACTGCAAATAATTTCTTACAATCTTCCTTCATCACAGACATCAAAAGGAAGACTTGATCTTGCAAGATTTGAATGTGTTGTTTTGAGATTTTATAGTTTTTTATTATATAAATACATGTGTAAAAAAGATTATTCAACATTAGTAATTAATGTTTAAATTATTTATTTCGTTTTAAAAAATGAATACTTCTTAGCTACTTGGATACACTAATTATATTTTTAATTCGTAACTGAATAATTTGTCAATGATGAATGGGATTGAGAAGGAAGGAAATGAACCAGTATAAGCTTGTAATAAGTAATATGAAAAAAAATATATACCCTTTTTGTTCGTGAGTTTCAA

Coding sequence (CDS)

ATGCCTGCCTTTGCCAATGTCACCACCCTCTTCTCCTCTTGCATTTCCGCTCCCCACAAATGCCGCCACCACCACTTTCCTGTCATCACCGCCTCCCTTTGCGTCCACCGCCGCCATATCGCAACCGCCCTCGCGGCACTGGTGGGGCTGCAGGCCACAGCACCGCCCCTTGCGCTAGCCCAAAGTTGGGGCACCCGCTCGTTCATTAAGGAGCGGTACTTCGAGCCCGGGCTGTCGGCGGAGGAGGCGGTGGCGAGGATAAGGCAAACGGCTGAAGGGCTTCACAGCATTCGTGAGATGTTGGAAACGATGTCATGGAGATATGTGATCTTCTACATTCGTTTGAAGTCGGCTTATCTGTCACAAGACTTGAAAACTGCCATGTCTGTTTTGCCACAAGCTCGCCAAAATGACTTTGTTAACACTGCTAATGAACTGGTCGATAACATGGCTGAGTTGGATTATTACGTTCGTACACCAAAGGTGTATGAGTCGTATTTGTATTACGAAAAGACACTGAAATCCATTGATGATCTGGTGGCTTTACTAGCATAA

Protein sequence

MPAFANVTTLFSSCISAPHKCRHHHFPVITASLCVHRRHIATALAALVGLQATAPPLALAQSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLSQDLKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALLA

Homology

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BLAST of Clc05G01380 vs. NCBI nr
Match: XP_038880767.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 319.3 bits (817), Expect = 2.2e-83
Identity = 167/187 (89.30%), Postives = 173/187 (92.51%), Query Frame = 0


Query: 1   MPAFANVTTLFSSCISAPHKCRH---HHFPVITASLCVHRRHIATALAALVGLQATAPPL 60
           M +FAN  TLF S IS PHKC H   HHFP+ITASL +HRRHIATALAA++GLQATA PL
Sbjct: 1   MTSFANANTLFISRISTPHKCSHRRRHHFPIITASLSIHRRHIATALAAVIGLQATA-PL 60

Query: 61  ALAQSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKS 120
           ALAQSWGT SFIKERYFEPGLSAEEAVARI+QTAEGLHSIREMLETMSWRYVIFYIRLKS
Sbjct: 61  ALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETMSWRYVIFYIRLKS 120

Query: 121 AYLSQDLKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSID 180
           AYLSQDLKTAMSVLPQARQNDFV TANELVDNMAELDYYVRTPKVYESYLYYEKTLKSID
Sbjct: 121 AYLSQDLKTAMSVLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSID 180

Query: 181 DLVALLA 185
           DLVALLA
Sbjct: 181 DLVALLA 186

[Close]

BLAST of Clc05G01380 vs. NCBI nr
Match: XP_022946003.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 312.4 bits (799), Expect = 2.6e-81
Identity = 159/184 (86.41%), Postives = 170/184 (92.39%), Query Frame = 0


Query: 1   MPAFANVTTLFSSCISAPHKCRHHHFPVITASLCVHRRHIATALAALVGLQATAPPLALA 60
           MPAFAN TTLFSS I  PH+C  H FP+I+ASL +HRRHIATALA +VGLQA APP ALA
Sbjct: 1   MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSIHRRHIATALALVVGLQAAAPP-ALA 60

Query: 61  QSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYL 120
           Q+WGT SFIKERYFEPGLS EEAVARIRQTAEGLHSIR+MLETMSWRYVIFYIRLKSAYL
Sbjct: 61  QTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYL 120

Query: 121 SQDLKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 180
           SQDLKTAMSVLPQARQN++V TANELVDNMAELDYYVRTPKVYESYLYYEKTLKS+DDLV
Sbjct: 121 SQDLKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDLV 180

Query: 181 ALLA 185
           A+LA
Sbjct: 181 AILA 183

[Close]

BLAST of Clc05G01380 vs. NCBI nr
Match: XP_022972860.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 309.3 bits (791), Expect = 2.2e-80
Identity = 157/184 (85.33%), Postives = 169/184 (91.85%), Query Frame = 0


Query: 1   MPAFANVTTLFSSCISAPHKCRHHHFPVITASLCVHRRHIATALAALVGLQATAPPLALA 60
           MPAFAN TTLFSS I  PH+C  H FP+I+ASL + RRHIATALA +VGLQA APP ALA
Sbjct: 1   MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSIQRRHIATALALVVGLQAAAPP-ALA 60

Query: 61  QSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYL 120
           Q+WGT SFIKERYF+PGLS EEAVARIRQTAEGLHSIR+MLETMSWRYVIFYIRLKSAYL
Sbjct: 61  QTWGTHSFIKERYFQPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYL 120

Query: 121 SQDLKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 180
           SQDLKTAMSVLPQARQND+V TANELVDNMAELDYY+RTPKVYESYLYYEKTLKS+DDLV
Sbjct: 121 SQDLKTAMSVLPQARQNDYVKTANELVDNMAELDYYIRTPKVYESYLYYEKTLKSMDDLV 180

Query: 181 ALLA 185
           A+LA
Sbjct: 181 AILA 183

[Close]

BLAST of Clc05G01380 vs. NCBI nr
Match: KAG6598987.1 (Photosynthetic NDH subunit of lumenal location 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011082.1 Photosynthetic NDH subunit of lumenal location 2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 308.9 bits (790), Expect = 2.9e-80
Identity = 158/184 (85.87%), Postives = 169/184 (91.85%), Query Frame = 0


Query: 1   MPAFANVTTLFSSCISAPHKCRHHHFPVITASLCVHRRHIATALAALVGLQATAPPLALA 60
           MPAFAN TTLFSS I  PH+C  H FP+I+ASL + RRHIATALA +VGLQA APP ALA
Sbjct: 1   MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSISRRHIATALALVVGLQAAAPP-ALA 60

Query: 61  QSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYL 120
           Q+WGT SFIKERYFEPGLS EEAVARIRQTAEGLHSIR+MLETMSWRYVIFYIRLKSAYL
Sbjct: 61  QTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYL 120

Query: 121 SQDLKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 180
           SQDLKTAMSVLPQARQN++V TANELVDNMAELDYYVRTPKVYESYLYYEKTLKS+DDLV
Sbjct: 121 SQDLKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDLV 180

Query: 181 ALLA 185
           A+LA
Sbjct: 181 AILA 183

[Close]

BLAST of Clc05G01380 vs. NCBI nr
Match: XP_023545788.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 307.8 bits (787), Expect = 6.5e-80
Identity = 157/184 (85.33%), Postives = 168/184 (91.30%), Query Frame = 0


Query: 1   MPAFANVTTLFSSCISAPHKCRHHHFPVITASLCVHRRHIATALAALVGLQATAPPLALA 60
           MPAFAN TTLFSS I  PH+C  H FP+I+ASL + RRHIATALA + GLQA APP ALA
Sbjct: 1   MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSIQRRHIATALALVAGLQAAAPP-ALA 60

Query: 61  QSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYL 120
           Q+WGT SFIKERYFEPGLS EEAVARIRQTAEGLHSIR+MLETMSWRYVIFYIRLKSAYL
Sbjct: 61  QTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYL 120

Query: 121 SQDLKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 180
           SQDLKTAMSVLPQARQN++V TANELVDNMAELDYYVRTPKVYESYLYYEKTLKS+DDLV
Sbjct: 121 SQDLKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDLV 180

Query: 181 ALLA 185
           A+LA
Sbjct: 181 AILA 183

[Close]

BLAST of Clc05G01380 vs. ExPASy Swiss-Prot
Match: Q9XI73 (Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL2 PE=1 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.8e-49
Identity = 97/148 (65.54%), Postives = 116/148 (78.38%), Query Frame = 0


Query: 37  RRHIATALAALVGLQATAPPLALAQSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHS 96
           RR   T+L     +          + WGTRSFIKE+YF PGLS E+A ARI+QTAEGL  
Sbjct: 43  RRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRD 102

Query: 97  IREMLETMSWRYVIFYIRLKSAYLSQDLKTAMSVLPQARQNDFVNTANELVDNMAELDYY 156
           +REML+ MSWRYVIFYIRLK AYLSQDL  AM++LP++R+ND+V  ANELV+NM+ELD+Y
Sbjct: 103 MREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDFY 162

Query: 157 VRTPKVYESYLYYEKTLKSIDDLVALLA 185
           VRTPKVYESYLYYEKTLKSID++V  LA
Sbjct: 163 VRTPKVYESYLYYEKTLKSIDNVVEFLA 190

[Close]

BLAST of Clc05G01380 vs. ExPASy Swiss-Prot
Match: Q41806 (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays OX=4577 GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-09
Identity = 34/122 (27.87%), Postives = 68/122 (55.74%), Query Frame = 0


Query: 65  TRSF---IKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLS 124
           TR F   +KER++   L   EAVAR++ +A+ + +++ +++  +W YV   +RL+++YL 
Sbjct: 91  TRDFDLPLKERFYLQPLPPAEAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLR 150

Query: 125 QDLKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVA 184
            DLKT ++  P+  +        +L   + +LD+  +     E+  Y+  T  ++ D++A
Sbjct: 151 YDLKTVIASKPKEEKKSLKELTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLA 210

[Close]

BLAST of Clc05G01380 vs. ExPASy Swiss-Prot
Match: Q9XFT3 (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-08
Identity = 30/115 (26.09%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 69  IKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLSQDLKTAM 128
           +K+R++   L   EA AR +++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 129 SVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 184
           S  P+  +    +   +L D +  LDY  +     ++  YY +T+ ++++++A L
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of Clc05G01380 vs. ExPASy Swiss-Prot
Match: Q41048 (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays OX=4577 GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.4e-08
Identity = 30/115 (26.09%), Postives = 64/115 (55.65%), Query Frame = 0


Query: 69  IKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLSQDLKTAM 128
           +KER++   L   EA AR++ +A+ + +++ +++  +W YV   +RL+++YL  DLKT +
Sbjct: 102 LKERFYLQPLPPAEAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVI 161

Query: 129 SVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 184
           +  P+  +        +L   + +LD+  +     E+  Y+  T  ++ D++A L
Sbjct: 162 ASKPKEEKKSLKELTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKL 216

[Close]

BLAST of Clc05G01380 vs. ExPASy Swiss-Prot
Match: P12301 (Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSBQ PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.0e-08
Identity = 30/120 (25.00%), Postives = 66/120 (55.00%), Query Frame = 0


Query: 64  GTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLSQD 123
           GT  + K+R++   L   EA  R + +A  + ++++ ++  +W  +   +RL+++YL  D
Sbjct: 112 GTLPYTKDRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYD 171

Query: 124 LKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 183
           LKT +S  P+  +       ++L  ++  LD+  +     E+  YY +T+ +I++++A L
Sbjct: 172 LKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKL 231

[Close]

BLAST of Clc05G01380 vs. ExPASy TrEMBL
Match: A0A6J1G2K7 (photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111450221 PE=3 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.3e-81
Identity = 159/184 (86.41%), Postives = 170/184 (92.39%), Query Frame = 0


Query: 1   MPAFANVTTLFSSCISAPHKCRHHHFPVITASLCVHRRHIATALAALVGLQATAPPLALA 60
           MPAFAN TTLFSS I  PH+C  H FP+I+ASL +HRRHIATALA +VGLQA APP ALA
Sbjct: 1   MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSIHRRHIATALALVVGLQAAAPP-ALA 60

Query: 61  QSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYL 120
           Q+WGT SFIKERYFEPGLS EEAVARIRQTAEGLHSIR+MLETMSWRYVIFYIRLKSAYL
Sbjct: 61  QTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYL 120

Query: 121 SQDLKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 180
           SQDLKTAMSVLPQARQN++V TANELVDNMAELDYYVRTPKVYESYLYYEKTLKS+DDLV
Sbjct: 121 SQDLKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDLV 180

Query: 181 ALLA 185
           A+LA
Sbjct: 181 AILA 183

[Close]

BLAST of Clc05G01380 vs. ExPASy TrEMBL
Match: A0A6J1I9U1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111471370 PE=3 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 1.1e-80
Identity = 157/184 (85.33%), Postives = 169/184 (91.85%), Query Frame = 0


Query: 1   MPAFANVTTLFSSCISAPHKCRHHHFPVITASLCVHRRHIATALAALVGLQATAPPLALA 60
           MPAFAN TTLFSS I  PH+C  H FP+I+ASL + RRHIATALA +VGLQA APP ALA
Sbjct: 1   MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSIQRRHIATALALVVGLQAAAPP-ALA 60

Query: 61  QSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYL 120
           Q+WGT SFIKERYF+PGLS EEAVARIRQTAEGLHSIR+MLETMSWRYVIFYIRLKSAYL
Sbjct: 61  QTWGTHSFIKERYFQPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYL 120

Query: 121 SQDLKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 180
           SQDLKTAMSVLPQARQND+V TANELVDNMAELDYY+RTPKVYESYLYYEKTLKS+DDLV
Sbjct: 121 SQDLKTAMSVLPQARQNDYVKTANELVDNMAELDYYIRTPKVYESYLYYEKTLKSMDDLV 180

Query: 181 ALLA 185
           A+LA
Sbjct: 181 AILA 183

[Close]

BLAST of Clc05G01380 vs. ExPASy TrEMBL
Match: A0A0A0L3W3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119660 PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.7e-78
Identity = 159/183 (86.89%), Postives = 165/183 (90.16%), Query Frame = 0


Query: 3   AFANVTTLFSSCISAPHKCRHH-HFPVITASLCVHRRHIATALAALVGLQATAPPLALAQ 62
           A AN  TLFSS IS PHK RH  HFPVITASL +HRRHIAT LA +VGLQA  P +ALAQ
Sbjct: 5   ANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPLVALAQ 64

Query: 63  SWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLS 122
           SWGT SFIKERYFEPGLSAEEAVARI+QTAEGLHSIREMLET SWRYVIFYIRLKSAYLS
Sbjct: 65  SWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLS 124

Query: 123 QDLKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVA 182
           QDLKTAM+ LPQAR+NDFV TANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVA
Sbjct: 125 QDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVA 184

Query: 183 LLA 185
           LLA
Sbjct: 185 LLA 187

[Close]

BLAST of Clc05G01380 vs. ExPASy TrEMBL
Match: A0A5D3DC39 (Photosynthetic NDH subunit of lumenal location 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G001130 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.7e-76
Identity = 155/178 (87.08%), Postives = 163/178 (91.57%), Query Frame = 0


Query: 8   TTLFSSCISAPHKCRH-HHFPVITASLCVHRRHIATALAALVGLQATAPPLALAQSWGTR 67
           +TLFSS IS PHK  H  HFP+ITASL +HRRHIAT LA ++GLQA A PLALAQSWGT 
Sbjct: 10  STLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQA-ATPLALAQSWGTH 69

Query: 68  SFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLSQDLKT 127
           SFIKERYFEPGLSA+EAVARI+QTAEGLHSIREMLET SWRYVIFYIRLKSAYLSQDLKT
Sbjct: 70  SFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKT 129

Query: 128 AMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALLA 185
           AM+ LPQARQNDFV TANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALLA
Sbjct: 130 AMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALLA 186

[Close]

BLAST of Clc05G01380 vs. ExPASy TrEMBL
Match: A0A1S3AVQ2 (photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483197 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.7e-76
Identity = 155/178 (87.08%), Postives = 163/178 (91.57%), Query Frame = 0


Query: 8   TTLFSSCISAPHKCRH-HHFPVITASLCVHRRHIATALAALVGLQATAPPLALAQSWGTR 67
           +TLFSS IS PHK  H  HFP+ITASL +HRRHIAT LA ++GLQA A PLALAQSWGT 
Sbjct: 10  STLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQA-ATPLALAQSWGTH 69

Query: 68  SFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLSQDLKT 127
           SFIKERYFEPGLSA+EAVARI+QTAEGLHSIREMLET SWRYVIFYIRLKSAYLSQDLKT
Sbjct: 70  SFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKT 129

Query: 128 AMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALLA 185
           AM+ LPQARQNDFV TANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALLA
Sbjct: 130 AMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALLA 186

[Close]

BLAST of Clc05G01380 vs. TAIR 10
Match: AT1G14150.1 (PsbQ-like 2 )

HSP 1 Score: 196.4 bits (498), Expect = 2.0e-50
Identity = 97/148 (65.54%), Postives = 116/148 (78.38%), Query Frame = 0


Query: 37  RRHIATALAALVGLQATAPPLALAQSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHS 96
           RR   T+L     +          + WGTRSFIKE+YF PGLS E+A ARI+QTAEGL  
Sbjct: 43  RRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRD 102

Query: 97  IREMLETMSWRYVIFYIRLKSAYLSQDLKTAMSVLPQARQNDFVNTANELVDNMAELDYY 156
           +REML+ MSWRYVIFYIRLK AYLSQDL  AM++LP++R+ND+V  ANELV+NM+ELD+Y
Sbjct: 103 MREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDFY 162

Query: 157 VRTPKVYESYLYYEKTLKSIDDLVALLA 185
           VRTPKVYESYLYYEKTLKSID++V  LA
Sbjct: 163 VRTPKVYESYLYYEKTLKSIDNVVEFLA 190

[Close]

BLAST of Clc05G01380 vs. TAIR 10
Match: AT1G14150.2 (PsbQ-like 2 )

HSP 1 Score: 143.3 bits (360), Expect = 2.0e-34
Identity = 70/117 (59.83%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 37  RRHIATALAALVGLQATAPPLALAQSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHS 96
           RR   T+L     +          + WGTRSFIKE+YF PGLS E+A ARI+QTAEGL  
Sbjct: 43  RRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRD 102

Query: 97  IREMLETMSWRYVIFYIRLKSAYLSQDLKTAMSVLPQARQNDFVNTANELVDNMAEL 154
           +REML+ MSWRYVIFYIRLK AYLSQDL  AM++LP++R+ND+V  ANELV+NM+E+
Sbjct: 103 MREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSEV 159

[Close]

BLAST of Clc05G01380 vs. TAIR 10
Match: AT4G21280.2 (photosystem II subunit QA )

HSP 1 Score: 61.6 bits (148), Expect = 7.5e-10
Identity = 30/115 (26.09%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 69  IKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLSQDLKTAM 128
           +K+R++   L   EA AR +++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 129 SVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 184
           S  P+  +    +   +L D +  LDY  +     ++  YY +T+ ++++++A L
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of Clc05G01380 vs. TAIR 10
Match: AT4G21280.1 (photosystem II subunit QA )

HSP 1 Score: 61.2 bits (147), Expect = 9.8e-10
Identity = 38/153 (24.84%), Postives = 78/153 (50.98%), Query Frame = 0


Query: 40  IATALAALVGLQATAPPLALAQSWGT------RSF---IKERYFEPGLSAEEAVARIRQT 99
           +   LA  + ++   PP       GT      R F   +K+R++   L   EA AR +++
Sbjct: 70  VQAVLADAISIKVGPPPAPSGGLPGTDNSDQARDFALALKDRFYLQPLPPTEAAARAKES 129

Query: 100 AEGLHSIREMLETMSWRYVIFYIRLKSAYLSQDLKTAMSVLPQARQNDFVNTANELVDNM 159
           A+ + +++ +++  +W YV   +R K++YL  DL T +S  P+  +    +   +L D +
Sbjct: 130 AKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKDLTTKLFDTI 189

Query: 160 AELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 184
             LDY  +     ++  YY +T+ ++++++A L
Sbjct: 190 DNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 222

[Close]

BLAST of Clc05G01380 vs. TAIR 10
Match: AT3G01440.1 (PsbQ-like 1 )

HSP 1 Score: 51.2 bits (121), Expect = 1.0e-06
Identity = 30/121 (24.79%), Postives = 61/121 (50.41%), Query Frame = 0


Query: 64  GTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLSQD 123
           GTR+FIK+  +   +  +  + R+++ A  L ++ +++   +  YV  Y+RLKS +L  D
Sbjct: 100 GTRTFIKKGVYVADIGTKGRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYD 159

Query: 124 LKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 183
               +S      +    + AN L DN  +L+   +T  + E+   Y+ T   + +++  +
Sbjct: 160 FDNLISAAASEDKQPLTDLANRLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRM 219

Query: 184 A 185
           A
Sbjct: 220 A 220

The following BLAST results are available for this feature:

BLAST of Clc05G01380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880767.1	2.2e-83	89.30	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Benincasa hispi...	[more]
XP_022946003.1	2.6e-81	86.41	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita mosch...	[more]
XP_022972860.1	2.2e-80	85.33	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita maxim...	[more]
KAG6598987.1	2.9e-80	85.87	Photosynthetic NDH subunit of lumenal location 2, chloroplastic, partial [Cucurb...	[more]
XP_023545788.1	6.5e-80	85.33	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita pepo ...	[more]

BLAST of Clc05G01380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XI73	2.8e-49	65.54	Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis t...	[more]
Q41806	3.6e-09	27.87	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays OX=4577 GN=PSBQ2...	[more]
Q9XFT3	1.1e-08	26.09	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
Q41048	2.4e-08	26.09	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays OX=4577 GN=PSBQ1...	[more]
P12301	9.0e-08	25.00	Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea OX=3562 G...	[more]

BLAST of Clc05G01380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G2K7	1.3e-81	86.41	photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita mos...	[more]
A0A6J1I9U1	1.1e-80	85.33	photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita max...	[more]
A0A0A0L3W3	1.7e-78	86.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119660 PE=3 SV=1	[more]
A0A5D3DC39	2.7e-76	87.08	Photosynthetic NDH subunit of lumenal location 2 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3AVQ2	2.7e-76	87.08	photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucumis melo ...	[more]

BLAST of Clc05G01380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14150.1	2.0e-50	65.54	PsbQ-like 2	[more]
AT1G14150.2	2.0e-34	59.83	PsbQ-like 2	[more]
AT4G21280.2	7.5e-10	26.09	photosystem II subunit QA	[more]
AT4G21280.1	9.8e-10	24.84	photosystem II subunit QA	[more]
AT3G01440.1	1.0e-06	24.79	PsbQ-like 1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023222	PsbQ-like domain superfamily	GENE3D	1.20.120.290		coord: 45..183 e-value: 2.3E-39 score: 136.8
IPR023222	PsbQ-like domain superfamily	SUPERFAMILY	101112	Oxygen-evolving enhancer protein 3,	coord: 73..184
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 59..184 e-value: 3.5E-35 score: 121.6
IPR008797	Oxygen-evolving enhancer protein 3	PANTHER	PTHR33399	OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC	coord: 1..184
None	No IPR available	PANTHER	PTHR33399:SF5	PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 2, CHLOROPLASTIC	coord: 1..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G01380.1	Clc05G01380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity