Clc05G00240 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc05G00240
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Reverse transcriptase
Location	ClcChr05: 170999 .. 171547 (+)
RNA-Seq Expression	Clc05G00240
Synteny	Clc05G00240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCAGTTCTGCTCTTCAGTGAACCAGTGGTTCTCCATTCTTCTTGGCAGTTTTTTTTTCGGTTTTGGCACGCCCCTAGTTCAATCAGGAGATAAAGTTCTGATCAAACTGCGCTCCGAACAGTTTCAATTTCGGGTACAAAGAGACCAATGTCTTGTGAGGAAATATGAAGGACCCCTAGAAGTGATTGAGAAGGTTGGGAAAACCTCTTATCGTGTTCATTTATTCTCATTGATGAAGATTCATCCCGTCATATATGTGAGTAACTTGAAGCCTTACCATCCTAATCCTGATGATGAGCAACACAATATTATGACTCCCTCTCCCGTCACGATGAAGAACACAACAGAAAAAGAGGTCGACGAGATACTTGCTGGAAGAACCTGCCGCGTTGGAAGACCAAGACGAGACCGTCACGATGAAGAACACAATAGAAAAAGAAGTCGACGAGATACTTGCTGGAAGAACCTGCCGCGTTGGAAGACCAAGACGAGACCTGAAGGAATTCTTGGTGAAGTGGAAAGGCTTCCCGGACGAAGAAATTAG

mRNA sequence

ATGGTTCAGTTCTGCTCTTCAGTGAACCAGTGGTTCTCCATTCTTCTTGGCAGTTTTTTTTTCGGTTTTGGCACGCCCCTAGTTCAATCAGGAGATAAAGTTCTGATCAAACTGCGCTCCGAACAGTTTCAATTTCGGGTACAAAGAGACCAATGTCTTGTGAGGAAATATGAAGGACCCCTAGAAGTGATTGAGAAGGTTGGGAAAACCTCTTATCGTGTTCATTTATTCTCATTGATGAAGATTCATCCCGTCATATATGTGAGTAACTTGAAGCCTTACCATCCTAATCCTGATGATGAGCAACACAATATTATGACTCCCTCTCCCGTCACGATGAAGAACACAACAGAAAAAGAGGTCGACGAGATACTTGCTGGAAGAACCTGCCGCGTTGGAAGACCAAGACGAGACCGTCACGATGAAGAACACAATAGAAAAAGAAGTCGACGAGATACTTGCTGGAAGAACCTGCCGCGTTGGAAGACCAAGACGAGACCTGAAGGAATTCTTGGTGAAGTGGAAAGGCTTCCCGGACGAAGAAATTAG

Coding sequence (CDS)

ATGGTTCAGTTCTGCTCTTCAGTGAACCAGTGGTTCTCCATTCTTCTTGGCAGTTTTTTTTTCGGTTTTGGCACGCCCCTAGTTCAATCAGGAGATAAAGTTCTGATCAAACTGCGCTCCGAACAGTTTCAATTTCGGGTACAAAGAGACCAATGTCTTGTGAGGAAATATGAAGGACCCCTAGAAGTGATTGAGAAGGTTGGGAAAACCTCTTATCGTGTTCATTTATTCTCATTGATGAAGATTCATCCCGTCATATATGTGAGTAACTTGAAGCCTTACCATCCTAATCCTGATGATGAGCAACACAATATTATGACTCCCTCTCCCGTCACGATGAAGAACACAACAGAAAAAGAGGTCGACGAGATACTTGCTGGAAGAACCTGCCGCGTTGGAAGACCAAGACGAGACCGTCACGATGAAGAACACAATAGAAAAAGAAGTCGACGAGATACTTGCTGGAAGAACCTGCCGCGTTGGAAGACCAAGACGAGACCTGAAGGAATTCTTGGTGAAGTGGAAAGGCTTCCCGGACGAAGAAATTAG

Protein sequence

MVQFCSSVNQWFSILLGSFFFGFGTPLVQSGDKVLIKLRSEQFQFRVQRDQCLVRKYEGPLEVIEKVGKTSYRVHLFSLMKIHPVIYVSNLKPYHPNPDDEQHNIMTPSPVTMKNTTEKEVDEILAGRTCRVGRPRRDRHDEEHNRKRSRRDTCWKNLPRWKTKTRPEGILGEVERLPGRRN

Homology

[Close]

BLAST of Clc05G00240 vs. NCBI nr
Match: XP_038882325.1 (uncharacterized protein LOC120073574 [Benincasa hispida])

HSP 1 Score: 156.8 bits (395), Expect = 1.8e-34
Identity = 79/110 (71.82%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 29  QSGDKVLIKLRSEQFQFRVQRDQCLVRKYEGPLEVIEKVGKTSYRVHLFSLMKIHPVIYV 88
           Q+GDKVLIKLR EQF+FR Q+DQ LVRKYEGP+EVIEKVG+TSYRV L S MKIHPVI+V
Sbjct: 55  QAGDKVLIKLRPEQFRFRGQKDQRLVRKYEGPVEVIEKVGRTSYRVQLPSWMKIHPVIHV 114

Query: 89  SNLKPYHPNPDDEQHNIMTPSPVTMKNTTEKEVDEILAGRTCRVGRPRRD 139
           S LKPYHP+P+DEQ N++   PVTMK++ EKEV +IL  RT R+GRPRR+
Sbjct: 115 SILKPYHPDPEDEQRNMLRRPPVTMKSSAEKEVAQILDKRTRRIGRPRRE 164

[Close]

BLAST of Clc05G00240 vs. NCBI nr
Match: XP_038885809.1 (uncharacterized protein LOC120076104 [Benincasa hispida])

HSP 1 Score: 151.4 bits (381), Expect = 7.7e-33
Identity = 77/110 (70.00%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 29  QSGDKVLIKLRSEQFQFRVQRDQCLVRKYEGPLEVIEKVGKTSYRVHLFSLMKIHPVIYV 88
           Q+GDKVLIKLR E+F+FR QRDQ LVRKYEGP+EVIEKVG+TSYRV L S MKIHPVI+V
Sbjct: 47  QAGDKVLIKLRPEKFRFRGQRDQRLVRKYEGPVEVIEKVGRTSYRVQLPSWMKIHPVIHV 106

Query: 89  SNLKPYHPNPDDEQHNIMTPSPVTMKNTTEKEVDEILAGRTCRVGRPRRD 139
           S LKPYH +P+DEQ N++   PVTMK++ EKEV +IL  R  R+GRPRR+
Sbjct: 107 SILKPYHSDPEDEQRNMLRRPPVTMKSSAEKEVAQILDKRARRIGRPRRE 156

[Close]

BLAST of Clc05G00240 vs. NCBI nr
Match: KAG7032459.1 (LRR receptor-like serine/threonine-protein kinase GSO2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135.2 bits (339), Expect = 5.7e-28
Identity = 65/106 (61.32%), Postives = 84/106 (79.25%), Query Frame = 0


Query: 29  QSGDKVLIKLRSEQFQFRVQRDQCLVRKYEGPLEVIEKVGKTSYRVHLFSLMKIHPVIYV 88
           Q+GD+VLIKLR EQ +FR ++DQ LVRKYEGP+EV++ +G TSYRV L + MKIHPVI V
Sbjct: 884 QAGDQVLIKLRPEQIRFRSRKDQRLVRKYEGPVEVLKNIGATSYRVALPTWMKIHPVIRV 943

Query: 89  SNLKPYHPNPDDEQHNIMTPSPVTMKNTTEKEVDEILAGRTCRVGR 135
           SNLKPYHPNPDD+Q N++T   + +K    KE++EILA R  ++GR
Sbjct: 944 SNLKPYHPNPDDDQRNVITRLSIDLKQRDSKEIEEILAERDRKIGR 989

[Close]

BLAST of Clc05G00240 vs. NCBI nr
Match: XP_022975161.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111474196 [Cucurbita maxima])

HSP 1 Score: 127.5 bits (319), Expect = 1.2e-25
Identity = 60/108 (55.56%), Postives = 85/108 (78.70%), Query Frame = 0


Query: 29  QSGDKVLIKLRSEQFQFRVQRDQCLVRKYEGPLEVIEKVGKTSYRVHLFSLMKIHPVIYV 88
           ++GD+VLIKLR +Q +FR Q+DQ LVRKYE P+EV++K+G TSYRV L + MK HPVI+V
Sbjct: 310 RAGDQVLIKLRPKQIRFRSQKDQRLVRKYECPVEVLKKIGATSYRVALPTWMKYHPVIHV 369

Query: 89  SNLKPYHPNPDDEQHNIMTPSPVTMKNTTEKEVDEILAGRTCRVGRPR 137
           SNLKPYHP+PD++Q N++    + +K    KE+++ILA R  ++GRP+
Sbjct: 370 SNLKPYHPDPDEDQLNVIPRPSIDLKQRDNKEIEKILADRVRKIGRPK 417

[Close]

BLAST of Clc05G00240 vs. NCBI nr
Match: KAA0031721.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 126.3 bits (316), Expect = 2.6e-25
Identity = 70/131 (53.44%), Postives = 91/131 (69.47%), Query Frame = 0


Query: 29   QSGDKVLIKLRSEQFQFRVQRDQCLVRKYEGPLEVIEKVGKTSYRVHLFSLMKIHPVIYV 88
            ++GD+VLIKLRSEQ +FR ++DQ LVRKYEGP+EV++KVG TSYRV L + MKI+PVI+V
Sbjct: 894  RAGDQVLIKLRSEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHV 953

Query: 89   SNLKPYHPNPDDEQHNIMTPSPVTMKNTTEKEVDEILAGRTCRVGRPRRDRHDEEHNRKR 148
            SNLKPYH + +D Q NI+T   + +    +K+V+EILA R  R  RP R  H+       
Sbjct: 954  SNLKPYHQDTEDLQRNIVTRPIIDLSQKEDKDVEEILAERVRRGRRPARRIHEYL----- 1013

Query: 149  SRRDTCWKNLP 160
                  WKNLP
Sbjct: 1014 ----IMWKNLP 1015

[Close]

BLAST of Clc05G00240 vs. ExPASy TrEMBL
Match: A0A6J1IDE6 (LOW QUALITY PROTEIN: uncharacterized protein LOC111474196 OS=Cucurbita maxima OX=3661 GN=LOC111474196 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 5.7e-26
Identity = 60/108 (55.56%), Postives = 85/108 (78.70%), Query Frame = 0


Query: 29  QSGDKVLIKLRSEQFQFRVQRDQCLVRKYEGPLEVIEKVGKTSYRVHLFSLMKIHPVIYV 88
           ++GD+VLIKLR +Q +FR Q+DQ LVRKYE P+EV++K+G TSYRV L + MK HPVI+V
Sbjct: 310 RAGDQVLIKLRPKQIRFRSQKDQRLVRKYECPVEVLKKIGATSYRVALPTWMKYHPVIHV 369

Query: 89  SNLKPYHPNPDDEQHNIMTPSPVTMKNTTEKEVDEILAGRTCRVGRPR 137
           SNLKPYHP+PD++Q N++    + +K    KE+++ILA R  ++GRP+
Sbjct: 370 SNLKPYHPDPDEDQLNVIPRPSIDLKQRDNKEIEKILADRVRKIGRPK 417

[Close]

BLAST of Clc05G00240 vs. ExPASy TrEMBL
Match: A0A5A7SQA2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G005090 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.3e-25
Identity = 70/131 (53.44%), Postives = 91/131 (69.47%), Query Frame = 0


Query: 29   QSGDKVLIKLRSEQFQFRVQRDQCLVRKYEGPLEVIEKVGKTSYRVHLFSLMKIHPVIYV 88
            ++GD+VLIKLRSEQ +FR ++DQ LVRKYEGP+EV++KVG TSYRV L + MKI+PVI+V
Sbjct: 894  RAGDQVLIKLRSEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHV 953

Query: 89   SNLKPYHPNPDDEQHNIMTPSPVTMKNTTEKEVDEILAGRTCRVGRPRRDRHDEEHNRKR 148
            SNLKPYH + +D Q NI+T   + +    +K+V+EILA R  R  RP R  H+       
Sbjct: 954  SNLKPYHQDTEDLQRNIVTRPIIDLSQKEDKDVEEILAERVRRGRRPARRIHEYL----- 1013

Query: 149  SRRDTCWKNLP 160
                  WKNLP
Sbjct: 1014 ----IMWKNLP 1015

[Close]

BLAST of Clc05G00240 vs. ExPASy TrEMBL
Match: A0A5A7V577 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold508G00480 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.7e-25
Identity = 71/131 (54.20%), Postives = 93/131 (70.99%), Query Frame = 0


Query: 29   QSGDKVLIKLRSEQFQFRVQRDQCLVRKYEGPLEVIEKVGKTSYRVHLFSLMKIHPVIYV 88
            ++GD+VLIKLR EQ +FR ++DQ LVRKYEGP+EV++KVG TSYRV L + MKI+PVI+V
Sbjct: 1433 RAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHV 1492

Query: 89   SNLKPYHPNPDDEQHNIMTPSPVTMKNTTEKEVDEILAGRTCRVGRPRRDRHDEEHNRKR 148
            SNLKPYH + +D Q N++TP  + +    +K+V+EILA R  R  RP R  H  E+  K 
Sbjct: 1493 SNLKPYHQDTEDLQRNVVTPPIIDLSQKEDKDVEEILAERVRRGRRPARRIH--EYLVK- 1552

Query: 149  SRRDTCWKNLP 160
                  WKNLP
Sbjct: 1553 ------WKNLP 1554

[Close]

BLAST of Clc05G00240 vs. ExPASy TrEMBL
Match: A0A6J1ICH1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111474309 OS=Cucurbita maxima OX=3661 GN=LOC111474309 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.2e-25
Identity = 59/108 (54.63%), Postives = 85/108 (78.70%), Query Frame = 0


Query: 29  QSGDKVLIKLRSEQFQFRVQRDQCLVRKYEGPLEVIEKVGKTSYRVHLFSLMKIHPVIYV 88
           ++GD+VLIKLR +Q +FR Q++Q LVRKYE P+EV++K+G TSYRV L + MK HPVI+V
Sbjct: 374 RAGDQVLIKLRPKQIRFRSQKNQRLVRKYECPVEVLKKIGATSYRVALPTWMKYHPVIHV 433

Query: 89  SNLKPYHPNPDDEQHNIMTPSPVTMKNTTEKEVDEILAGRTCRVGRPR 137
           SNLKPYHP+PD++Q N++    + +K    KE+++ILA R  ++GRP+
Sbjct: 434 SNLKPYHPDPDEDQLNVIPRPSIDLKQRDNKEIEKILADRVRKIGRPK 481

[Close]

BLAST of Clc05G00240 vs. ExPASy TrEMBL
Match: A0A5A7UG93 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00640 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.7e-25
Identity = 71/131 (54.20%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 29  QSGDKVLIKLRSEQFQFRVQRDQCLVRKYEGPLEVIEKVGKTSYRVHLFSLMKIHPVIYV 88
           ++GD+VLIKLR EQ +FR ++DQ LVRKYEGP+EV++KVG TSYRV L + MKI+PVI+V
Sbjct: 462 RAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALLTWMKIYPVIHV 521

Query: 89  SNLKPYHPNPDDEQHNIMTPSPVTMKNTTEKEVDEILAGRTCRVGRPRRDRHDEEHNRKR 148
           SNLKPYH + +D Q NI+T   + +    +K+V+EILA R  R  RP R  H  E+  K 
Sbjct: 522 SNLKPYHQDTEDLQRNIVTRPVIDLSQKEDKDVEEILAERVRRGRRPARRIH--EYLVK- 581

Query: 149 SRRDTCWKNLP 160
                 WKNLP
Sbjct: 582 ------WKNLP 583

The following BLAST results are available for this feature:

BLAST of Clc05G00240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882325.1	1.8e-34	71.82	uncharacterized protein LOC120073574 [Benincasa hispida]	[more]
XP_038885809.1	7.7e-33	70.00	uncharacterized protein LOC120076104 [Benincasa hispida]	[more]
KAG7032459.1	5.7e-28	61.32	LRR receptor-like serine/threonine-protein kinase GSO2, partial [Cucurbita argyr...	[more]
XP_022975161.1	1.2e-25	55.56	LOW QUALITY PROTEIN: uncharacterized protein LOC111474196 [Cucurbita maxima]	[more]
KAA0031721.1	2.6e-25	53.44	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Clc05G00240 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc05G00240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IDE6	5.7e-26	55.56	LOW QUALITY PROTEIN: uncharacterized protein LOC111474196 OS=Cucurbita maxima OX...	[more]
A0A5A7SQA2	1.3e-25	53.44	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]
A0A5A7V577	1.7e-25	54.20	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold50...	[more]
A0A6J1ICH1	2.2e-25	54.63	LOW QUALITY PROTEIN: uncharacterized protein LOC111474309 OS=Cucurbita maxima OX...	[more]
A0A5A7UG93	3.7e-25	54.20	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19...	[more]

BLAST of Clc05G00240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc05G00240.1	Clc05G00240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding