Clc04G13450 (gene) Watermelon (cordophanus) v2

Overview
NameClc04G13450
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionProtein kinase superfamily protein
LocationClcChr04: 26631138 .. 26632800 (+)
RNA-Seq ExpressionClc04G13450
SyntenyClc04G13450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAGCCCCATGCCTACACCGCCGGTTTCTCCCCATCCTTCCATCTATGACCACATGGAGGCAAGTTGGTATGATTTTATCCCACCTACAACTGATGGACCCTTTAACCCAACTCCTCATTTGATTGCTTTGGCACTATGGTTTAGAGAACTTGGTATGTGCATTAGGGTCATCCCAACCAAGAAGCATTCCAACAAATATTCAGCAAAGAAAAAAGGAGGCTTGAGAGAATTGAGAAACCTCGTAAGCTTTATTTCCTATGATAAAAAAGCACAAAGCAAGCACAGAGAAGGGTCTTTATCGATATGACTTCTGATCTTAGTGCATTTGATTGCTTCGGTTTTGAGTTGGATTGGCAGCCTTCTTCCTAATTGCTGGGCTTTTCATTGTGATGGATCATGTTCATCTTTGATGTGCGCTTTGGCTTCTTCCATTTGGATTAAGATGGATGGATCGTGGTGCTGTTTTGTTTCGGTCCTTGCTTTTGTCAGATTGGATTATGTCTTTTCTTTATCTCTCCCTCCCTTGTACATCATTGATTGTATCTTTCTTTCTTGGGTTCTACGTTTGTTGTGTCTTTGGTTTTTTCCCCTTTTTGGATTATTTCCTATTGTACTGTTTGGATGTTTCATTCATCGATAAAATTGTTTCTTACATAAAAAAAAATGTGCATATTTTCACTTCAACCCGTCTTTCAAATAAACTAAAACAAACTTTTAGATTGAAAATGAAGATGACATTGCAGTCTAAATCAAATCAAAAGCAATTAAACGAAATTATGTACTGAACGTACTCTTGTTCTCTTTCTCTGCCATGCCTGTCTTCTTTGCTTAGAAAATTTGTGACTTACTTTGTACGAAGTTGGTAATGTCATTTTCCTCTTGGTCACCCACGCTGGAGAAAATATAAAATAACTTGAGTGGCCTGTTACAATTTATCTTTTTTCATGTTTCCTTGTAATCAGAATCTCTCCCAGCTTGCATCCATCAACTACGACCTGCTTTCCAAGGGTTTGAAGGATGATCCTCCCAATCATGATGCATAAATGTATTAATCCTCACATAACCATCGAATGCTTCCAGCTGATTGGTTCGGTGTTCGTCCTTGTTTTGTATTTGTAATGTTCTGTACATGTTCGTGTAAGTCTTTCTTAGCTCCTCTACATGCCTTTACAACTTTATTTGCGATTGGTGGAGTGATTTGATCATTTTTGTAACTGCAGAGACAGAAAAATTTTAGAGGCGAAATCTTGTTCGAGATGCTCTCTTTCAAATTATAGGCGCCATCTTCAGAATCATGTGGCCTTAAGTTATCATTTTTCGTTCTACGTTTCACTTCTCTCTTCCAACTCACCTCACAGTGAGTTCAGAACTTCAATTTTCCATTGTTTAAATGGTCCCATAACTGTTTTACCCATTTTCTCAGACATTCCGTTTATTTATGTATTTATAATATATACATTGAGTTCAGAACTTCAATCTTCCATTGTTTAAATGGTTCCATAACTGTTCTACCCTTTTTCTCAGACATTCCGTATATTTATGTATTTATAATATATATTATATAACAAAGAGAAGCATCATTGTGTACAGCATTTCGTTTGGCATCCATCCTGACCATATGAAGGCAAGTTGCAATAAAATCCGAAGGCGTTTGTTTC

mRNA sequence

ATGTCAAGCCCCATGCCTACACCGCCGGTTTCTCCCCATCCTTCCATCTATGACCACATGGAGGCAAGTTGGTATGATTTTATCCCACCTACAACTGATGGACCCTTTAACCCAACTCCTCATTTGATTGCTTTGGCACTATGGTTTAGAGAACTTGGTATGTGCATTAGGAATCTCTCCCAGCTTGCATCCATCAACTACGACCTGCTTTCCAAGGGTTTGAAGGATGATCCTCCCAATCATGATGCATAAATGTATTAATCCTCACATAACCATCGAATGCTTCCAGCTGATTGGTTCGGTGTTCGTCCTTGTTTTGTATTTGTAATGTTCTGTACATGTTCGTAGACAGAAAAATTTTAGAGGCGAAATCTTGTTCGAGATGCTCTCTTTCAAATTATAGGCGCCATCTTCAGAATCATGTGGCCTTAAGTTATCATTTTTCGTTCTACGTTTCACTTCTCTCTTCCAACTCACCTCACAGTGAGTTCAGAACTTCAATTTTCCATTGTTTAAATGGTCCCATAACTGTTTTACCCATTTTCTCAGACATTCCGTTTATTTATGTATTTATAATATATACATTGAGTTCAGAACTTCAATCTTCCATTGTTTAAATGGTTCCATAACTGTTCTACCCTTTTTCTCAGACATTCCGTATATTTATGTATTTATAATATATATTATATAACAAAGAGAAGCATCATTGTGTACAGCATTTCGTTTGGCATCCATCCTGACCATATGAAGGCAAGTTGCAATAAAATCCGAAGGCGTTTGTTTC

Coding sequence (CDS)

ATGTCAAGCCCCATGCCTACACCGCCGGTTTCTCCCCATCCTTCCATCTATGACCACATGGAGGCAAGTTGGTATGATTTTATCCCACCTACAACTGATGGACCCTTTAACCCAACTCCTCATTTGATTGCTTTGGCACTATGGTTTAGAGAACTTGGTATGTGCATTAGGAATCTCTCCCAGCTTGCATCCATCAACTACGACCTGCTTTCCAAGGGTTTGAAGGATGATCCTCCCAATCATGATGCATAA

Protein sequence

MSSPMPTPPVSPHPSIYDHMEASWYDFIPPTTDGPFNPTPHLIALALWFRELGMCIRNLSQLASINYDLLSKGLKDDPPNHDA
Homology
[Close]
BLAST of Clc04G13450 vs. NCBI nr
Match: XP_011649519.1 (probable serine/threonine protein kinase IREH1 [Cucumis sativus] >KAE8652490.1 hypothetical protein Csa_013146 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 4.0e-05
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 57   RNLSQLASINYDLLSKGLKDDPPNHDA 84
            +NLSQLASINYDLLSKGLKDDPPNHDA
Sbjct: 1272 KNLSQLASINYDLLSKGLKDDPPNHDA 1298

[Close]
BLAST of Clc04G13450 vs. NCBI nr
Match: KAA0036022.1 (putative serine/threonine protein kinase IREH1 [Cucumis melo var. makuwa] >TYJ98819.1 putative serine/threonine protein kinase IREH1 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 4.0e-05
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 57  RNLSQLASINYDLLSKGLKDDPPNHDA 84
           +NLSQLASINYDLLSKGLKDDPPNHDA
Sbjct: 98  KNLSQLASINYDLLSKGLKDDPPNHDA 124

[Close]
BLAST of Clc04G13450 vs. NCBI nr
Match: XP_038893957.1 (probable serine/threonine protein kinase IREH1 isoform X2 [Benincasa hispida])

HSP 1 Score: 58.2 bits (139), Expect = 4.0e-05
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 57   RNLSQLASINYDLLSKGLKDDPPNHDA 84
            +NLSQLASINYDLLSKGLKDDPPNHDA
Sbjct: 1272 KNLSQLASINYDLLSKGLKDDPPNHDA 1298

[Close]
BLAST of Clc04G13450 vs. NCBI nr
Match: XP_008443041.1 (PREDICTED: probable serine/threonine protein kinase IREH1 [Cucumis melo])

HSP 1 Score: 58.2 bits (139), Expect = 4.0e-05
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 57   RNLSQLASINYDLLSKGLKDDPPNHDA 84
            +NLSQLASINYDLLSKGLKDDPPNHDA
Sbjct: 1272 KNLSQLASINYDLLSKGLKDDPPNHDA 1298

[Close]
BLAST of Clc04G13450 vs. NCBI nr
Match: XP_038893956.1 (probable serine/threonine protein kinase IREH1 isoform X1 [Benincasa hispida])

HSP 1 Score: 58.2 bits (139), Expect = 4.0e-05
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 57   RNLSQLASINYDLLSKGLKDDPPNHDA 84
            +NLSQLASINYDLLSKGLKDDPPNHDA
Sbjct: 1293 KNLSQLASINYDLLSKGLKDDPPNHDA 1319

[Close]
BLAST of Clc04G13450 vs. ExPASy TrEMBL
Match: A0A5D3BIK4 (Putative serine/threonine protein kinase IREH1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00070 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.0e-05
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 57  RNLSQLASINYDLLSKGLKDDPPNHDA 84
           +NLSQLASINYDLLSKGLKDDPPNHDA
Sbjct: 98  KNLSQLASINYDLLSKGLKDDPPNHDA 124

[Close]
BLAST of Clc04G13450 vs. ExPASy TrEMBL
Match: A0A0A0LSH8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G031190 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.0e-05
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 57  RNLSQLASINYDLLSKGLKDDPPNHDA 84
           +NLSQLASINYDLLSKGLKDDPPNHDA
Sbjct: 504 KNLSQLASINYDLLSKGLKDDPPNHDA 530

[Close]
BLAST of Clc04G13450 vs. ExPASy TrEMBL
Match: A0A1S3B6M3 (probable serine/threonine protein kinase IREH1 OS=Cucumis melo OX=3656 GN=LOC103486458 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.0e-05
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 57   RNLSQLASINYDLLSKGLKDDPPNHDA 84
            +NLSQLASINYDLLSKGLKDDPPNHDA
Sbjct: 1272 KNLSQLASINYDLLSKGLKDDPPNHDA 1298

[Close]
BLAST of Clc04G13450 vs. ExPASy TrEMBL
Match: A0A6J1G9M9 (probable serine/threonine protein kinase IREH1 OS=Cucurbita moschata OX=3662 GN=LOC111452222 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.4e-05
Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 57   RNLSQLASINYDLLSKGLKDDPPNHDA 84
            +NLSQLASINYDLLSKGLKDDPP+HDA
Sbjct: 1270 KNLSQLASINYDLLSKGLKDDPPDHDA 1296

[Close]
BLAST of Clc04G13450 vs. ExPASy TrEMBL
Match: A0A6J1KF88 (probable serine/threonine protein kinase IREH1 OS=Cucurbita maxima OX=3661 GN=LOC111493337 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.7e-04
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 0 

Query: 57   RNLSQLASINYDLLSKGLKDDPPNHDA 84
            +NLSQLASINYDLLSKGLKDDPP HDA
Sbjct: 1270 KNLSQLASINYDLLSKGLKDDPPYHDA 1296

[Close]
BLAST of Clc04G13450 vs. TAIR 10
Match: AT3G17850.1 (Protein kinase superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 1.3e-04
Identity = 21/28 (75.00%), Postives = 24/28 (85.71%), Query Frame = 0 

Query: 57   RNLSQLASINYDLLSKGLKDDP---PNH 82
            +NLSQLASINYDLLSKG KD+P   P+H
Sbjct: 1268 KNLSQLASINYDLLSKGWKDEPQQIPHH 1295

The following BLAST results are available for this feature:
BLAST of Clc04G13450 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011649519.14.0e-0596.30probable serine/threonine protein kinase IREH1 [Cucumis sativus] >KAE8652490.1 h... [more]
KAA0036022.14.0e-0596.30putative serine/threonine protein kinase IREH1 [Cucumis melo var. makuwa] >TYJ98... [more]
XP_038893957.14.0e-0596.30probable serine/threonine protein kinase IREH1 isoform X2 [Benincasa hispida][more]
XP_008443041.14.0e-0596.30PREDICTED: probable serine/threonine protein kinase IREH1 [Cucumis melo][more]
XP_038893956.14.0e-0596.30probable serine/threonine protein kinase IREH1 isoform X1 [Benincasa hispida][more]
BLAST of Clc04G13450 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc04G13450 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BIK42.0e-0596.30Putative serine/threonine protein kinase IREH1 OS=Cucumis melo var. makuwa OX=11... [more]
A0A0A0LSH82.0e-0596.30Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G031190 PE=4 SV=1[more]
A0A1S3B6M32.0e-0596.30probable serine/threonine protein kinase IREH1 OS=Cucumis melo OX=3656 GN=LOC103... [more]
A0A6J1G9M97.4e-0592.59probable serine/threonine protein kinase IREH1 OS=Cucurbita moschata OX=3662 GN=... [more]
A0A6J1KF881.7e-0492.59probable serine/threonine protein kinase IREH1 OS=Cucurbita maxima OX=3661 GN=LO... [more]
BLAST of Clc04G13450 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G17850.11.3e-0475.00Protein kinase superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc04G13450.2Clc04G13450.2mRNA