Clc04G13360 (gene) Watermelon (cordophanus) v2

Overview
NameClc04G13360
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionDUF4283 domain-containing protein
LocationClcChr04: 26561413 .. 26561844 (-)
RNA-Seq ExpressionClc04G13360
SyntenyClc04G13360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACTTTTTCTGTACATAGTTTGAATCTGGGAAGTTCATGGTCGAAGATACGGAAGTCAAAAACAGTGTTACCCCTATCAAAATCACACTTCTTTTGGATGATGGACCAGTTAGCAGACCTCCTTAGTGGTTCTAGTGTTCGTTTTTTCTTAAGGAATATGCGAGACGAATATGGAGCAATGAGAGTAGCGAAATTCAAGTCTAAACAGGGATGGAATTTAAGATGCGTAGTATGGCCAGTGTTCGGAGGACGGTATTTCATTCATATTCAAGAGGGGCCCAAGCAACAAGGATGGTCAGATGTTCTAAGGATGCTTAAAGACTTCATCCATAAAAGCGGGAGCGTTAAAAAGGAGTTGGAAAGGAAAGCAAAGTCTTCGGAGGCCACATCAGAGATCAGAGTCACGGATTTTCTCCCCTCTAATTAG

mRNA sequence

ATGGCGACTTTTTCTGTACATAGTTTGAATCTGGGAAGTTCATGGTCGAAGATACGGAAGTCAAAAACAGTGTTACCCCTATCAAAATCACACTTCTTTTGGATGATGGACCAGTTAGCAGACCTCCTTAGTGGTTCTAGTGTTCGTTTTTTCTTAAGGAATATGCGAGACGAATATGGAGCAATGAGAGTAGCGAAATTCAAGTCTAAACAGGGATGGAATTTAAGATGCGTAGTATGGCCAGTGTTCGGAGGACGGTATTTCATTCATATTCAAGAGGGGCCCAAGCAACAAGGATGGTCAGATGTTCTAAGGATGCTTAAAGACTTCATCCATAAAAGCGGGAGCGTTAAAAAGGAGTTGGAAAGGAAAGCAAAGTCTTCGGAGGCCACATCAGAGATCAGAGTCACGGATTTTCTCCCCTCTAATTAG

Coding sequence (CDS)

ATGGCGACTTTTTCTGTACATAGTTTGAATCTGGGAAGTTCATGGTCGAAGATACGGAAGTCAAAAACAGTGTTACCCCTATCAAAATCACACTTCTTTTGGATGATGGACCAGTTAGCAGACCTCCTTAGTGGTTCTAGTGTTCGTTTTTTCTTAAGGAATATGCGAGACGAATATGGAGCAATGAGAGTAGCGAAATTCAAGTCTAAACAGGGATGGAATTTAAGATGCGTAGTATGGCCAGTGTTCGGAGGACGGTATTTCATTCATATTCAAGAGGGGCCCAAGCAACAAGGATGGTCAGATGTTCTAAGGATGCTTAAAGACTTCATCCATAAAAGCGGGAGCGTTAAAAAGGAGTTGGAAAGGAAAGCAAAGTCTTCGGAGGCCACATCAGAGATCAGAGTCACGGATTTTCTCCCCTCTAATTAG

Protein sequence

MATFSVHSLNLGSSWSKIRKSKTVLPLSKSHFFWMMDQLADLLSGSSVRFFLRNMRDEYGAMRVAKFKSKQGWNLRCVVWPVFGGRYFIHIQEGPKQQGWSDVLRMLKDFIHKSGSVKKELERKAKSSEATSEIRVTDFLPSN
Homology
BLAST of Clc04G13360 vs. NCBI nr
Match: XP_038884899.1 (uncharacterized protein LOC120075514 [Benincasa hispida])

HSP 1 Score: 65.9 bits (159), Expect = 3.3e-07
Identity = 33/91 (36.26%), Postives = 53/91 (58.24%), Query Frame = 0

Query: 18  IRKSKTVLPLSKSHFFWMMDQLADLLSGSSVRFFLRNMRDEYGAMRVAKFKSKQGWNLRC 77
           I+K +++L LS +   W+++    LL  S+  FFL   + +   MR+AKF++K+ W +  
Sbjct: 27  IKKGQSIL-LSLTSATWLLESFRRLLYSSTFEFFLLKEKVDQNFMRLAKFRAKENWFVEF 86

Query: 78  VVWPVFGGRYFIH-IQEGPKQQGWSDVLRML 108
            VWP+ GGR  IH I  G ++ GW D   M+
Sbjct: 87  AVWPITGGRRNIHNIPFGNEKAGWQDFKEMI 116

BLAST of Clc04G13360 vs. NCBI nr
Match: KAA0063414.1 (uncharacterized protein E6C27_scaffold508G00510 [Cucumis melo var. makuwa] >TYK11672.1 uncharacterized protein E5676_scaffold828G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 2.8e-06
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 0

Query: 72  GWNLRCVVWPVFGGRYFIHIQEGPKQQGWSDVLRMLKDFIHKSGSVKKELERK 125
           GW LRC VWP  GGR+++H+  GP QQGW     M+KDF+  S S K+++  K
Sbjct: 14  GWVLRCTVWPESGGRFYLHLPVGPNQQGWISFANMIKDFLSVSTS-KEDIRMK 65

BLAST of Clc04G13360 vs. NCBI nr
Match: KAE8649297.1 (hypothetical protein Csa_015271, partial [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 2.8e-06
Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = 0

Query: 41  DLLSGSSVRFFLRNMRDEYGAMRVAKFKSKQGWNLRCVVWPVFGGRYFIHIQEGPKQQGW 100
           DL   S   +F +  + E G +  ++F++K GW LRC+ WP  GGR FI I  G  +Q W
Sbjct: 4   DLNKKSEEEYFYKKEKIECGRVVTSEFRTKSGWILRCISWPSTGGRSFIRIPIGEDKQEW 63

Query: 101 SDVLRMLKDF 111
               +ML+DF
Sbjct: 64  KRFGKMLEDF 73

BLAST of Clc04G13360 vs. NCBI nr
Match: TYK14531.1 (CWF19-like protein 2-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 4.1e-05
Identity = 26/62 (41.94%), Postives = 36/62 (58.06%), Query Frame = 0

Query: 60  GAMRVAKFKSKQGWNLRCVVWPVFGGRYFIHIQEGPKQQGWSDVLRMLKDFIHKSGSVKK 119
           G M+V+K + K GW L C  WP+ GG   I +     +QGWSD+  MLK F+ KS +  +
Sbjct: 325 GRMKVSKIRDKAGWVLSCDFWPMSGGHSNIRVGSWVDKQGWSDLHTMLKSFLTKSAARHE 384

Query: 120 EL 122
            L
Sbjct: 385 RL 386

BLAST of Clc04G13360 vs. ExPASy TrEMBL
Match: A0A5A7V878 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00460 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.4e-06
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 0

Query: 72  GWNLRCVVWPVFGGRYFIHIQEGPKQQGWSDVLRMLKDFIHKSGSVKKELERK 125
           GW LRC VWP  GGR+++H+  GP QQGW     M+KDF+  S S K+++  K
Sbjct: 14  GWVLRCTVWPESGGRFYLHLPVGPNQQGWISFANMIKDFLSVSTS-KEDIRMK 65

BLAST of Clc04G13360 vs. ExPASy TrEMBL
Match: A0A5D3CRV4 (CWF19-like protein 2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00100 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.0e-05
Identity = 26/62 (41.94%), Postives = 36/62 (58.06%), Query Frame = 0

Query: 60  GAMRVAKFKSKQGWNLRCVVWPVFGGRYFIHIQEGPKQQGWSDVLRMLKDFIHKSGSVKK 119
           G M+V+K + K GW L C  WP+ GG   I +     +QGWSD+  MLK F+ KS +  +
Sbjct: 325 GRMKVSKIRDKAGWVLSCDFWPMSGGHSNIRVGSWVDKQGWSDLHTMLKSFLTKSAARHE 384

Query: 120 EL 122
            L
Sbjct: 385 RL 386

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038884899.13.3e-0736.26uncharacterized protein LOC120075514 [Benincasa hispida][more]
KAA0063414.12.8e-0649.06uncharacterized protein E6C27_scaffold508G00510 [Cucumis melo var. makuwa] >TYK1... [more]
KAE8649297.12.8e-0640.00hypothetical protein Csa_015271, partial [Cucumis sativus][more]
TYK14531.14.1e-0541.94CWF19-like protein 2-like protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V8781.4e-0649.06DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3CRV42.0e-0541.94CWF19-like protein 2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc04G13360.1Clc04G13360.1mRNA