Clc04G12420 (gene) Watermelon (cordophanus) v2

Overview
NameClc04G12420
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionRemorin_C domain-containing protein
LocationClcChr04: 25897571 .. 25899118 (-)
RNA-Seq ExpressionClc04G12420
SyntenyClc04G12420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCTTTGATTAGTCAAAAAAGGTATAATTTTTCTCTTTATCCCTGTAGCCCACTTTGAATATTTGATGTATCTTCATCAGTTTTTCAACTGGTTCATCATTTACAACCCAAAAAGTTTTAAAAGGGAAAAGAAAAAGAAGATTAAAATGACAACTATCATTAAAACAGAAAAGTAATCAAATCAGATGAAGAGCCATGAAGCTTAGGTTCTACAAGACCAAAAGCTTTCTTTCTTCTTTCCATCTTTTATTTGAATACTGAAAATAATATGACTATTGGCTGCTTTGTAGAGTGAGTTTTTCAGATTCAGGACAACATAAAAAGGATGCTTCCATCAAACCTAGAGATGGAATTCCACAGAAAAAAACAAGATCCTTCAAAGAGGGTACTGATCATTTGACAGAAACATAATGCAAAGCTTCCTTAGAAAACTGCTGCTATATCTTCCAAGCCATTTTCAGTTTTCATCCATGTGGTTGTAGTGCAAAAAACTTGATACTTTTTTCCTCAATTTTTCAGATAAAAAGGAGTCCAAGATGTTACAATGGCATTTTTCAAACCAAATGAATGAGGATTATGATTCAAGGGATATAGAGTTTGCCACTGCAGTAGCATCAGTTGCATTTGCAATTCGCTCCCAAGAAGAAACAGATCTACAATATCAGAAAAAGAAGAGAGAAAACCTGGAAACCTCAATAACAAAGGTTAAAAGCAGAAAAGATGATACAGCTGCACTCGCTCCCAGCATAACAAGACGATTGTCTAACAAGGAAACCACCAATCCTGGTAAATTTAAATATTGTGATTAGAAATTTCTTATAATTTATTGTCACAAAAAAAAATATCATGTTCATGTTCATTACACTAGGTCAATCTTCAGTAAAGAAGCCAATGGAACAGGAAAAGATCAAGGAATCAGTGACTGGAATTCCCATACCGCCGCCGAGACGGAACCTTGTACCAACTAAAGCAGATGTGTGGGAGAGAAATAAGATGGAGAAGATTAGTAAAAGGTATATACTAAGTGCTTTATCAGTTAAATATTCTATTAGCTGCTGCATCCATCAATCTTCAGGAGCTGAACTTAGTTGCAAGTCCTTAAGTTCATGACACTCTTGCACTAAAAGATTTCTCACCTGAATCTTGCTTATAGAGTTCTTTTCTATGAGAATCTCATATTTCAGGTATCAGAAGATAAAAGCTTCAATTCTTGCTTGGGAGAATGAGAAAAAAATGCGTGCGAAACTTCATATGGAAAAGAAAAAGGTCTTGTCTCGCCTTTTGAATGTTTCCTTTATTATAAACATTTGAAGGCCTATTGAAAAAAATTATGTTAATGAAGGTTGAATTGGAGCGCCAAAAGGCACTGGTTCTGCAATATTACCAGGAGAACATAGCACAAATCGACCAGATCGCAGGGGGAGCAATGGCACAGCTAGAAGAGAAGAGAAAAAAGGAAGAGAATAAAGCAAGAAAAACAGCAAACAGAATCAGATCAACTGGAAGACTTCCTGTGACTTGTTTCTGCTTCCAGTATCACTAA

mRNA sequence

ATGGAAGCTTTGATTAGTCAAAAAAGAGTGAGTTTTTCAGATTCAGGACAACATAAAAAGGATGCTTCCATCAAACCTAGAGATGGAATTCCACAGAAAAAAACAAGATCCTTCAAAGAGGATAAAAAGGAGTCCAAGATGTTACAATGGCATTTTTCAAACCAAATGAATGAGGATTATGATTCAAGGGATATAGAGTTTGCCACTGCAGTAGCATCAGTTGCATTTGCAATTCGCTCCCAAGAAGAAACAGATCTACAATATCAGAAAAAGAAGAGAGAAAACCTGGAAACCTCAATAACAAAGGTTAAAAGCAGAAAAGATGATACAGCTGCACTCGCTCCCAGCATAACAAGACGATTGTCTAACAAGGAAACCACCAATCCTGGTCAATCTTCAGTAAAGAAGCCAATGGAACAGGAAAAGATCAAGGAATCAGTGACTGGAATTCCCATACCGCCGCCGAGACGGAACCTTGTACCAACTAAAGCAGATGTGTGGGAGAGAAATAAGATGGAGAAGATTAGTAAAAGGTATCAGAAGATAAAAGCTTCAATTCTTGCTTGGGAGAATGAGAAAAAAATGCGTGCGAAACTTCATATGGAAAAGAAAAAGGTTGAATTGGAGCGCCAAAAGGCACTGGTTCTGCAATATTACCAGGAGAACATAGCACAAATCGACCAGATCGCAGGGGGAGCAATGGCACAGCTAGAAGAGAAGAGAAAAAAGGAAGAGAATAAAGCAAGAAAAACAGCAAACAGAATCAGATCAACTGGAAGACTTCCTGTGACTTGTTTCTGCTTCCAGTATCACTAA

Coding sequence (CDS)

ATGGAAGCTTTGATTAGTCAAAAAAGAGTGAGTTTTTCAGATTCAGGACAACATAAAAAGGATGCTTCCATCAAACCTAGAGATGGAATTCCACAGAAAAAAACAAGATCCTTCAAAGAGGATAAAAAGGAGTCCAAGATGTTACAATGGCATTTTTCAAACCAAATGAATGAGGATTATGATTCAAGGGATATAGAGTTTGCCACTGCAGTAGCATCAGTTGCATTTGCAATTCGCTCCCAAGAAGAAACAGATCTACAATATCAGAAAAAGAAGAGAGAAAACCTGGAAACCTCAATAACAAAGGTTAAAAGCAGAAAAGATGATACAGCTGCACTCGCTCCCAGCATAACAAGACGATTGTCTAACAAGGAAACCACCAATCCTGGTCAATCTTCAGTAAAGAAGCCAATGGAACAGGAAAAGATCAAGGAATCAGTGACTGGAATTCCCATACCGCCGCCGAGACGGAACCTTGTACCAACTAAAGCAGATGTGTGGGAGAGAAATAAGATGGAGAAGATTAGTAAAAGGTATCAGAAGATAAAAGCTTCAATTCTTGCTTGGGAGAATGAGAAAAAAATGCGTGCGAAACTTCATATGGAAAAGAAAAAGGTTGAATTGGAGCGCCAAAAGGCACTGGTTCTGCAATATTACCAGGAGAACATAGCACAAATCGACCAGATCGCAGGGGGAGCAATGGCACAGCTAGAAGAGAAGAGAAAAAAGGAAGAGAATAAAGCAAGAAAAACAGCAAACAGAATCAGATCAACTGGAAGACTTCCTGTGACTTGTTTCTGCTTCCAGTATCACTAA

Protein sequence

MEALISQKRVSFSDSGQHKKDASIKPRDGIPQKKTRSFKEDKKESKMLQWHFSNQMNEDYDSRDIEFATAVASVAFAIRSQEETDLQYQKKKRENLETSITKVKSRKDDTAALAPSITRRLSNKETTNPGQSSVKKPMEQEKIKESVTGIPIPPPRRNLVPTKADVWERNKMEKISKRYQKIKASILAWENEKKMRAKLHMEKKKVELERQKALVLQYYQENIAQIDQIAGGAMAQLEEKRKKEENKARKTANRIRSTGRLPVTCFCFQYH
Homology
BLAST of Clc04G12420 vs. NCBI nr
Match: XP_038893935.1 (uncharacterized protein LOC120082729 [Benincasa hispida])

HSP 1 Score: 448.4 bits (1152), Expect = 4.5e-122
Identity = 237/271 (87.45%), Postives = 255/271 (94.10%), Query Frame = 0

Query: 1   MEALISQKRVSFSDSGQHKKDASIKPRDGIPQKKTRSFKEDKKESKMLQWHFSNQMNEDY 60
           ME LISQ+RVSFSDSGQHKKDASIK RDGIPQKKTRSFKEDKKESK L+W+FSNQMNEDY
Sbjct: 1   METLISQRRVSFSDSGQHKKDASIKRRDGIPQKKTRSFKEDKKESKKLKWYFSNQMNEDY 60

Query: 61  DSRDIEFATAVASVAFAIRSQEETDLQYQKKKRENLETSITKVKSRKDDTAALAPSITRR 120
           DS DIE ATAVAS AFAIRSQEETDLQYQKKKRE+LE SI+KVKSRKD+T A APSIT+R
Sbjct: 61  DSSDIELATAVASAAFAIRSQEETDLQYQKKKRESLEASISKVKSRKDNTPAFAPSITKR 120

Query: 121 LSNKETTNPGQSSVKKPMEQEKIKESVTGIPIPPPRRNLVPTKADVWERNKMEKISKRYQ 180
           LSNKETTNPGQSS+KKPMEQEK KES+TGIPIPPPRR+LVPT+ADVWERNKMEKI+KRY 
Sbjct: 121 LSNKETTNPGQSSIKKPMEQEK-KESMTGIPIPPPRRSLVPTRADVWERNKMEKINKRYH 180

Query: 181 KIKASILAWENEKKMRAKLHMEKKKVELERQKALVLQYYQENIAQIDQIAGGAMAQLEEK 240
           KIKASIL WENE+KMRAKLHMEKKKVELE +KAL LQYYQ+NIA+IDQIAGGA AQLEEK
Sbjct: 181 KIKASILVWENERKMRAKLHMEKKKVELEHKKALFLQYYQDNIARIDQIAGGARAQLEEK 240

Query: 241 RKKEENKARKTANRIRSTGRLPVTCFCFQYH 272
           RK+EENKAR+TANRIRSTGRLPVTCFC QYH
Sbjct: 241 RKREENKARETANRIRSTGRLPVTCFCLQYH 270

BLAST of Clc04G12420 vs. NCBI nr
Match: XP_008447778.1 (PREDICTED: remorin isoform X2 [Cucumis melo])

HSP 1 Score: 423.3 bits (1087), Expect = 1.6e-114
Identity = 229/275 (83.27%), Postives = 249/275 (90.55%), Query Frame = 0

Query: 1   MEALISQKRVSFSDSGQHKKDASIKPRDGIPQKKTRSFKEDKKESKMLQWHFSNQMNEDY 60
           ME L SQ+RVSFSDSGQ K+D +IKPRDGIPQKKTRSFKEDKKESK LQW+FSNQMNEDY
Sbjct: 1   METLTSQRRVSFSDSGQQKRDPTIKPRDGIPQKKTRSFKEDKKESKKLQWYFSNQMNEDY 60

Query: 61  DSRDIEFATAVASVAFAIRSQEETDLQYQKKKRENLETSITKVKSRKDDTAALAPSITRR 120
           DS+DIEFATAVAS AFAIRS+EETDLQYQKKKRE++E SITKVKSRKDDTAA AP ITR 
Sbjct: 61  DSKDIEFATAVASAAFAIRSKEETDLQYQKKKRESMEASITKVKSRKDDTAAFAPRITRP 120

Query: 121 LSNKE--TTNPGQSSVKKPMEQEKIKESVTGIPIP--PPRRNLVPTKADVWERNKMEKIS 180
           LS KE  TTNPGQSS+K+PMEQEK +ESVTGIP P  PPRR+L+P++ADVWERNKME+IS
Sbjct: 121 LSKKETQTTNPGQSSIKRPMEQEK-RESVTGIPKPPAPPRRSLIPSRADVWERNKMERIS 180

Query: 181 KRYQKIKASILAWENEKKMRAKLHMEKKKVELERQKALVLQYYQENIAQIDQIAGGAMAQ 240
           KRY KIKASILAWENEKKM AKLHMEKKK ELER+KAL  QYY ENIA+IDQIAGGA A 
Sbjct: 181 KRYLKIKASILAWENEKKMHAKLHMEKKKDELERKKALFQQYYHENIARIDQIAGGARAH 240

Query: 241 LEEKRKKEENKARKTANRIRSTGRLPVTCFCFQYH 272
           LEEKRK+EE KAR+TANRIRSTGRLPVTCFCFQYH
Sbjct: 241 LEEKRKREEKKARETANRIRSTGRLPVTCFCFQYH 274

BLAST of Clc04G12420 vs. NCBI nr
Match: XP_008447698.1 (PREDICTED: remorin isoform X1 [Cucumis melo])

HSP 1 Score: 417.9 bits (1073), Expect = 6.5e-113
Identity = 230/281 (81.85%), Postives = 249/281 (88.61%), Query Frame = 0

Query: 1   MEALISQ------KRVSFSDSGQHKKDASIKPRDGIPQKKTRSFKEDKKESKMLQWHFSN 60
           ME L SQ      KRVSFSDSGQ K+D +IKPRDGIPQKKTRSFKEDKKESK LQW+FSN
Sbjct: 1   METLTSQRSSKSFKRVSFSDSGQQKRDPTIKPRDGIPQKKTRSFKEDKKESKKLQWYFSN 60

Query: 61  QMNEDYDSRDIEFATAVASVAFAIRSQEETDLQYQKKKRENLETSITKVKSRKDDTAALA 120
           QMNEDYDS+DIEFATAVAS AFAIRS+EETDLQYQKKKRE++E SITKVKSRKDDTAA A
Sbjct: 61  QMNEDYDSKDIEFATAVASAAFAIRSKEETDLQYQKKKRESMEASITKVKSRKDDTAAFA 120

Query: 121 PSITRRLSNKE--TTNPGQSSVKKPMEQEKIKESVTGIPIP--PPRRNLVPTKADVWERN 180
           P ITR LS KE  TTNPGQSS+K+PMEQEK +ESVTGIP P  PPRR+L+P++ADVWERN
Sbjct: 121 PRITRPLSKKETQTTNPGQSSIKRPMEQEK-RESVTGIPKPPAPPRRSLIPSRADVWERN 180

Query: 181 KMEKISKRYQKIKASILAWENEKKMRAKLHMEKKKVELERQKALVLQYYQENIAQIDQIA 240
           KME+ISKRY KIKASILAWENEKKM AKLHMEKKK ELER+KAL  QYY ENIA+IDQIA
Sbjct: 181 KMERISKRYLKIKASILAWENEKKMHAKLHMEKKKDELERKKALFQQYYHENIARIDQIA 240

Query: 241 GGAMAQLEEKRKKEENKARKTANRIRSTGRLPVTCFCFQYH 272
           GGA A LEEKRK+EE KAR+TANRIRSTGRLPVTCFCFQYH
Sbjct: 241 GGARAHLEEKRKREEKKARETANRIRSTGRLPVTCFCFQYH 280

BLAST of Clc04G12420 vs. NCBI nr
Match: TYJ98919.1 (remorin isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 412.9 bits (1060), Expect = 2.1e-111
Identity = 223/266 (83.83%), Postives = 242/266 (90.98%), Query Frame = 0

Query: 10  VSFSDSGQHKKDASIKPRDGIPQKKTRSFKEDKKESKMLQWHFSNQMNEDYDSRDIEFAT 69
           VSFSDSGQ K+D +IKPRDGIPQKKTRSFKEDKKESK LQW+FSNQMNEDYDS+DIEFAT
Sbjct: 31  VSFSDSGQQKRDPTIKPRDGIPQKKTRSFKEDKKESKKLQWYFSNQMNEDYDSKDIEFAT 90

Query: 70  AVASVAFAIRSQEETDLQYQKKKRENLETSITKVKSRKDDTAALAPSITRRLSNKE--TT 129
           AVAS AFAIRS+EETDLQYQKKKRE++E SITKVKSRKDDTAA AP ITR LS KE  TT
Sbjct: 91  AVASAAFAIRSKEETDLQYQKKKRESMEASITKVKSRKDDTAAFAPRITRPLSKKETQTT 150

Query: 130 NPGQSSVKKPMEQEKIKESVTGIPIP--PPRRNLVPTKADVWERNKMEKISKRYQKIKAS 189
           NPGQSS+K+PMEQEK +ESVTGIP P  PPRR+L+P++ADVWERNKME+ISKRY KIKAS
Sbjct: 151 NPGQSSIKRPMEQEK-RESVTGIPKPPAPPRRSLIPSRADVWERNKMERISKRYLKIKAS 210

Query: 190 ILAWENEKKMRAKLHMEKKKVELERQKALVLQYYQENIAQIDQIAGGAMAQLEEKRKKEE 249
           ILAWENEKKM AKLHMEKKK ELER+KAL  QYY ENIA+IDQIAGGA A LEEKRK+EE
Sbjct: 211 ILAWENEKKMHAKLHMEKKKDELERKKALFQQYYHENIARIDQIAGGARAHLEEKRKREE 270

Query: 250 NKARKTANRIRSTGRLPVTCFCFQYH 272
            KAR+TANRIRSTGRLPVTCFCFQYH
Sbjct: 271 KKARETANRIRSTGRLPVTCFCFQYH 295

BLAST of Clc04G12420 vs. NCBI nr
Match: XP_022137546.1 (uncharacterized protein At3g61260 [Momordica charantia])

HSP 1 Score: 411.8 bits (1057), Expect = 4.7e-111
Identity = 220/271 (81.18%), Postives = 241/271 (88.93%), Query Frame = 0

Query: 1   MEALISQKRVSFSDSGQHKKDASIKPRDGIPQKKTRSFKEDKKESKMLQWHFSNQMNEDY 60
           ME L+SQ+RVSF DSGQHKKDASIK RDGIPQ KTRSFKEDKK SK LQWHFSNQMNED+
Sbjct: 1   METLVSQRRVSFGDSGQHKKDASIKSRDGIPQPKTRSFKEDKKGSKGLQWHFSNQMNEDH 60

Query: 61  DSRDIEFATAVASVAFAIRSQEETDLQYQKKKRENLETSITKVKSRKDDTAALAPSITRR 120
           DSRDIEFATAVAS A AI S EETDLQ+QKK RE+LET +TKVKS KDDTAA+  S+TRR
Sbjct: 61  DSRDIEFATAVASAALAIHSLEETDLQHQKKIRESLETPMTKVKSIKDDTAAIPTSVTRR 120

Query: 121 LSNKETTNPGQSSVKKPMEQEKIKESVTGIPIPPPRRNLVPTKADVWERNKMEKISKRYQ 180
           LSNKETTNPGQSS+KKPM QEK KE  TGIP+PPPR+NLV T+ADVWER+KME+I KRYQ
Sbjct: 121 LSNKETTNPGQSSIKKPMGQEK-KEPGTGIPLPPPRQNLVQTRADVWERDKMERIRKRYQ 180

Query: 181 KIKASILAWENEKKMRAKLHMEKKKVELERQKALVLQYYQENIAQIDQIAGGAMAQLEEK 240
           K+K+SILAWENEKKM AKL MEKKK ELER+K L LQYYQ+NI +IDQIAGGA AQLEEK
Sbjct: 181 KMKSSILAWENEKKMHAKLQMEKKKAELERKKVLFLQYYQDNIVRIDQIAGGARAQLEEK 240

Query: 241 RKKEENKARKTANRIRSTGRLPVTCFCFQYH 272
           RK EE+KAR+TANRIR TGRLPVTCFCFQYH
Sbjct: 241 RKNEEDKARETANRIRLTGRLPVTCFCFQYH 270

BLAST of Clc04G12420 vs. ExPASy TrEMBL
Match: A0A1S3BHL8 (remorin isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490088 PE=3 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 7.5e-115
Identity = 229/275 (83.27%), Postives = 249/275 (90.55%), Query Frame = 0

Query: 1   MEALISQKRVSFSDSGQHKKDASIKPRDGIPQKKTRSFKEDKKESKMLQWHFSNQMNEDY 60
           ME L SQ+RVSFSDSGQ K+D +IKPRDGIPQKKTRSFKEDKKESK LQW+FSNQMNEDY
Sbjct: 1   METLTSQRRVSFSDSGQQKRDPTIKPRDGIPQKKTRSFKEDKKESKKLQWYFSNQMNEDY 60

Query: 61  DSRDIEFATAVASVAFAIRSQEETDLQYQKKKRENLETSITKVKSRKDDTAALAPSITRR 120
           DS+DIEFATAVAS AFAIRS+EETDLQYQKKKRE++E SITKVKSRKDDTAA AP ITR 
Sbjct: 61  DSKDIEFATAVASAAFAIRSKEETDLQYQKKKRESMEASITKVKSRKDDTAAFAPRITRP 120

Query: 121 LSNKE--TTNPGQSSVKKPMEQEKIKESVTGIPIP--PPRRNLVPTKADVWERNKMEKIS 180
           LS KE  TTNPGQSS+K+PMEQEK +ESVTGIP P  PPRR+L+P++ADVWERNKME+IS
Sbjct: 121 LSKKETQTTNPGQSSIKRPMEQEK-RESVTGIPKPPAPPRRSLIPSRADVWERNKMERIS 180

Query: 181 KRYQKIKASILAWENEKKMRAKLHMEKKKVELERQKALVLQYYQENIAQIDQIAGGAMAQ 240
           KRY KIKASILAWENEKKM AKLHMEKKK ELER+KAL  QYY ENIA+IDQIAGGA A 
Sbjct: 181 KRYLKIKASILAWENEKKMHAKLHMEKKKDELERKKALFQQYYHENIARIDQIAGGARAH 240

Query: 241 LEEKRKKEENKARKTANRIRSTGRLPVTCFCFQYH 272
           LEEKRK+EE KAR+TANRIRSTGRLPVTCFCFQYH
Sbjct: 241 LEEKRKREEKKARETANRIRSTGRLPVTCFCFQYH 274

BLAST of Clc04G12420 vs. ExPASy TrEMBL
Match: A0A1S3BI00 (remorin isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490088 PE=3 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 3.2e-113
Identity = 230/281 (81.85%), Postives = 249/281 (88.61%), Query Frame = 0

Query: 1   MEALISQ------KRVSFSDSGQHKKDASIKPRDGIPQKKTRSFKEDKKESKMLQWHFSN 60
           ME L SQ      KRVSFSDSGQ K+D +IKPRDGIPQKKTRSFKEDKKESK LQW+FSN
Sbjct: 1   METLTSQRSSKSFKRVSFSDSGQQKRDPTIKPRDGIPQKKTRSFKEDKKESKKLQWYFSN 60

Query: 61  QMNEDYDSRDIEFATAVASVAFAIRSQEETDLQYQKKKRENLETSITKVKSRKDDTAALA 120
           QMNEDYDS+DIEFATAVAS AFAIRS+EETDLQYQKKKRE++E SITKVKSRKDDTAA A
Sbjct: 61  QMNEDYDSKDIEFATAVASAAFAIRSKEETDLQYQKKKRESMEASITKVKSRKDDTAAFA 120

Query: 121 PSITRRLSNKE--TTNPGQSSVKKPMEQEKIKESVTGIPIP--PPRRNLVPTKADVWERN 180
           P ITR LS KE  TTNPGQSS+K+PMEQEK +ESVTGIP P  PPRR+L+P++ADVWERN
Sbjct: 121 PRITRPLSKKETQTTNPGQSSIKRPMEQEK-RESVTGIPKPPAPPRRSLIPSRADVWERN 180

Query: 181 KMEKISKRYQKIKASILAWENEKKMRAKLHMEKKKVELERQKALVLQYYQENIAQIDQIA 240
           KME+ISKRY KIKASILAWENEKKM AKLHMEKKK ELER+KAL  QYY ENIA+IDQIA
Sbjct: 181 KMERISKRYLKIKASILAWENEKKMHAKLHMEKKKDELERKKALFQQYYHENIARIDQIA 240

Query: 241 GGAMAQLEEKRKKEENKARKTANRIRSTGRLPVTCFCFQYH 272
           GGA A LEEKRK+EE KAR+TANRIRSTGRLPVTCFCFQYH
Sbjct: 241 GGARAHLEEKRKREEKKARETANRIRSTGRLPVTCFCFQYH 280

BLAST of Clc04G12420 vs. ExPASy TrEMBL
Match: A0A5D3BIU6 (Remorin isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001160 PE=3 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 1.0e-111
Identity = 223/266 (83.83%), Postives = 242/266 (90.98%), Query Frame = 0

Query: 10  VSFSDSGQHKKDASIKPRDGIPQKKTRSFKEDKKESKMLQWHFSNQMNEDYDSRDIEFAT 69
           VSFSDSGQ K+D +IKPRDGIPQKKTRSFKEDKKESK LQW+FSNQMNEDYDS+DIEFAT
Sbjct: 31  VSFSDSGQQKRDPTIKPRDGIPQKKTRSFKEDKKESKKLQWYFSNQMNEDYDSKDIEFAT 90

Query: 70  AVASVAFAIRSQEETDLQYQKKKRENLETSITKVKSRKDDTAALAPSITRRLSNKE--TT 129
           AVAS AFAIRS+EETDLQYQKKKRE++E SITKVKSRKDDTAA AP ITR LS KE  TT
Sbjct: 91  AVASAAFAIRSKEETDLQYQKKKRESMEASITKVKSRKDDTAAFAPRITRPLSKKETQTT 150

Query: 130 NPGQSSVKKPMEQEKIKESVTGIPIP--PPRRNLVPTKADVWERNKMEKISKRYQKIKAS 189
           NPGQSS+K+PMEQEK +ESVTGIP P  PPRR+L+P++ADVWERNKME+ISKRY KIKAS
Sbjct: 151 NPGQSSIKRPMEQEK-RESVTGIPKPPAPPRRSLIPSRADVWERNKMERISKRYLKIKAS 210

Query: 190 ILAWENEKKMRAKLHMEKKKVELERQKALVLQYYQENIAQIDQIAGGAMAQLEEKRKKEE 249
           ILAWENEKKM AKLHMEKKK ELER+KAL  QYY ENIA+IDQIAGGA A LEEKRK+EE
Sbjct: 211 ILAWENEKKMHAKLHMEKKKDELERKKALFQQYYHENIARIDQIAGGARAHLEEKRKREE 270

Query: 250 NKARKTANRIRSTGRLPVTCFCFQYH 272
            KAR+TANRIRSTGRLPVTCFCFQYH
Sbjct: 271 KKARETANRIRSTGRLPVTCFCFQYH 295

BLAST of Clc04G12420 vs. ExPASy TrEMBL
Match: A0A6J1C6Y1 (uncharacterized protein At3g61260 OS=Momordica charantia OX=3673 GN=LOC111008969 PE=3 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 2.3e-111
Identity = 220/271 (81.18%), Postives = 241/271 (88.93%), Query Frame = 0

Query: 1   MEALISQKRVSFSDSGQHKKDASIKPRDGIPQKKTRSFKEDKKESKMLQWHFSNQMNEDY 60
           ME L+SQ+RVSF DSGQHKKDASIK RDGIPQ KTRSFKEDKK SK LQWHFSNQMNED+
Sbjct: 1   METLVSQRRVSFGDSGQHKKDASIKSRDGIPQPKTRSFKEDKKGSKGLQWHFSNQMNEDH 60

Query: 61  DSRDIEFATAVASVAFAIRSQEETDLQYQKKKRENLETSITKVKSRKDDTAALAPSITRR 120
           DSRDIEFATAVAS A AI S EETDLQ+QKK RE+LET +TKVKS KDDTAA+  S+TRR
Sbjct: 61  DSRDIEFATAVASAALAIHSLEETDLQHQKKIRESLETPMTKVKSIKDDTAAIPTSVTRR 120

Query: 121 LSNKETTNPGQSSVKKPMEQEKIKESVTGIPIPPPRRNLVPTKADVWERNKMEKISKRYQ 180
           LSNKETTNPGQSS+KKPM QEK KE  TGIP+PPPR+NLV T+ADVWER+KME+I KRYQ
Sbjct: 121 LSNKETTNPGQSSIKKPMGQEK-KEPGTGIPLPPPRQNLVQTRADVWERDKMERIRKRYQ 180

Query: 181 KIKASILAWENEKKMRAKLHMEKKKVELERQKALVLQYYQENIAQIDQIAGGAMAQLEEK 240
           K+K+SILAWENEKKM AKL MEKKK ELER+K L LQYYQ+NI +IDQIAGGA AQLEEK
Sbjct: 181 KMKSSILAWENEKKMHAKLQMEKKKAELERKKVLFLQYYQDNIVRIDQIAGGARAQLEEK 240

Query: 241 RKKEENKARKTANRIRSTGRLPVTCFCFQYH 272
           RK EE+KAR+TANRIR TGRLPVTCFCFQYH
Sbjct: 241 RKNEEDKARETANRIRLTGRLPVTCFCFQYH 270

BLAST of Clc04G12420 vs. ExPASy TrEMBL
Match: A0A0A0LTG1 (Remorin_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G038990 PE=3 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 8.6e-111
Identity = 227/273 (83.15%), Postives = 245/273 (89.74%), Query Frame = 0

Query: 1   MEALISQKRVSFSDSGQHKKDASIKPRDGIPQKKTRSFKEDKKESKMLQWHFSNQMNEDY 60
           ME L SQ+RVSFSDSGQ K+D ++KP DGIPQKKT SFK+DKKESK LQW+FSNQ NEDY
Sbjct: 1   METLTSQRRVSFSDSGQQKRDPTVKPSDGIPQKKT-SFKKDKKESKTLQWYFSNQTNEDY 60

Query: 61  DSRDIEFATAVASVAFAIRSQEETDLQYQKKKRENLETSITKVKSRKDDTAALAPSITRR 120
           DS+DIEFATAVAS A AIRSQEETDLQYQKKKRE++E SITKVKSRKD TAALAPS+TRR
Sbjct: 61  DSKDIEFATAVASAALAIRSQEETDLQYQKKKRESVEASITKVKSRKDGTAALAPSMTRR 120

Query: 121 LSNKE--TTNPGQSSVKKPMEQEKIKESVTGIPIPP--PRRNLVPTKADVWERNKMEKIS 180
           LS KE  TTNPGQSS+KKPM QEK +ESVTGIP PP  PRR+LVPT+ADVWERNKMEKIS
Sbjct: 121 LSKKETQTTNPGQSSIKKPMGQEK-RESVTGIPKPPAQPRRSLVPTRADVWERNKMEKIS 180

Query: 181 KRYQKIKASILAWENEKKMRAKLHMEKKKVELERQKALVLQYYQENIAQIDQIAGGAMAQ 240
           KRY KIKASILAWENEKKM AK HMEKKK ELER+KAL  QYYQENIA+IDQIAGGA AQ
Sbjct: 181 KRYLKIKASILAWENEKKMHAKHHMEKKKAELERKKALFQQYYQENIARIDQIAGGARAQ 240

Query: 241 LEEKRKKEENKARKTANRIRSTGRLPVTCFCFQ 270
           LEEKRK+EE KAR+TANRIRSTGRLPVTCFCFQ
Sbjct: 241 LEEKRKREEKKARETANRIRSTGRLPVTCFCFQ 271

BLAST of Clc04G12420 vs. TAIR 10
Match: AT5G61280.1 (Remorin family protein )

HSP 1 Score: 111.7 bits (278), Expect = 9.3e-25
Identity = 89/274 (32.48%), Postives = 142/274 (51.82%), Query Frame = 0

Query: 1   MEALISQKRVSFSDSGQHKKDASIKPRDGIPQKKTRSFKEDKKESKMLQWHFSNQMNEDY 60
           M+ L+ Q+R   S S   K D  +     I      ++ +++       W+   + N+ Y
Sbjct: 1   MDNLVKQRRRRVSISENIKTDLPMLSELDITDYPALNWLKNQS-----YWY---EKNDYY 60

Query: 61  DSRDIEFATAVASVAFAIRSQEETDLQYQKKKRENLETSITKVKSRKDDTAALAPSITRR 120
           + ++ E A +VA  AF IRS EE D Q  K+ RE ++ S T     K     +  +  +R
Sbjct: 61  NEKESELAVSVAVAAFVIRSMEEADKQKSKRIREEIKRSRT-----KKSNLVIPNTQVKR 120

Query: 121 LSNKET--TNPGQSSVKKPM---EQEKIKESVTGIPIPPPRRNLVPTKADVWERNKMEKI 180
           LS   T     G+ S +K +     E  +    G            +KAD WE+++++KI
Sbjct: 121 LSKSYTQEVKIGEESFRKKLLEYPSENRRPQEIGSSSGTSGLASASSKADSWEKSQIKKI 180

Query: 181 SKRYQKIKASILAWENEKKMRAKLHMEKKKVELERQKALVLQYYQENIAQIDQIAGGAMA 240
             RY+K+KA I+ WENE+K+ A L MEK+K ELE++K +  Q+Y+  +A+I  IA GA  
Sbjct: 181 RLRYEKMKADIVGWENERKLAATLLMEKRKSELEKRKGINNQHYKSKLARIQLIADGAKK 240

Query: 241 QLEEKRKKEENKARKTANRIRSTGRLPVTCFCFQ 270
           QLEEKR+ +E +      ++  TG++P   FCF+
Sbjct: 241 QLEEKRRSKEAQVHGKVKKMSRTGKVPNNYFCFR 261

BLAST of Clc04G12420 vs. TAIR 10
Match: AT1G13920.1 (Remorin family protein )

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-16
Identity = 101/346 (29.19%), Postives = 160/346 (46.24%), Query Frame = 0

Query: 1   MEALISQKRVSFSDSGQHKKDASIKPRD-GIPQKKTRSFKEDKKE-SKMLQWHFSNQMN- 60
           M+ LI Q R     S +  ++     R+  +  +K+ SFKEDKK+ S  LQ  FS QM+ 
Sbjct: 1   MDTLIKQTRRKHPASQEKIREVGSSTREKKVSARKSVSFKEDKKKPSNWLQKQFSRQMSG 60

Query: 61  EDYDS-RDIEFATAVASVAFAIRSQEETDLQYQKKKRENLETSITKVKSRKDDTAALAP- 120
           + YD   +++ A AVA+ A+AI + EET L+      E L  S ++ KSR ++   L   
Sbjct: 61  QSYDPIGEMDHAAAVAATAYAIATFEETWLENYHSGLE-LGPSSSRSKSRSEELLPLEEP 120

Query: 121 -SITRRLS------NKETTNPGQSSVKKPM------------------------------ 180
            S++RR S      + ET +    ++K PM                              
Sbjct: 121 RSLSRRFSGQLSFIDSETKDHKPPTLKSPMRKSSSVKKTFSMNLMGDHTKQNQDSEEKHE 180

Query: 181 -EQEKIKE-----------SVTGIPIPPPRRNLVP-----------------------TK 240
            +++ + E           S    P PPP   L P                       + 
Sbjct: 181 RQRKPVSEPPRIQPPLRTRSEPRAPPPPPPPLLSPSPLRLPPRETKRQSSEHTSRKDDST 240

Query: 241 ADVWERNKMEKISKRYQKIKASILAWENEKKMRAKLHME-KKKVELERQKALVLQYYQEN 269
           AD WE+ ++ KI  RY+K+   I  WE +K+ +A+  ++  ++ ELE+++   LQ ++E+
Sbjct: 241 ADAWEKAELSKIKARYEKLNRKIDLWEAKKREKARRKLDISEQSELEQRRKRGLQRFRED 300

BLAST of Clc04G12420 vs. TAIR 10
Match: AT1G69325.1 (Remorin family protein )

HSP 1 Score: 63.5 bits (153), Expect = 2.9e-10
Identity = 34/101 (33.66%), Postives = 60/101 (59.41%), Query Frame = 0

Query: 165 DVWERNKMEKISKRYQKIKASILAWENEKKMRAKLHMEKKKVELERQKALVLQYYQENIA 224
           D W+  ++ K  K+Y+K+   I++WE++K+ +AK  + + +  +E+ K    Q +++   
Sbjct: 19  DQWKETEISKSRKKYEKLSEKIVSWEDKKRKKAKRKLHRTERSVEKTKLKATQRFRDENE 78

Query: 225 QIDQIAGGAMAQLEEKRKKEENKARKTANRIRSTGRLPVTC 266
           +I+ I   A A   E R KEE K ++ AN +R+TGR P TC
Sbjct: 79  RIEIIVASARAHAYESRIKEELKVKEKANLMRTTGRKPSTC 119

BLAST of Clc04G12420 vs. TAIR 10
Match: AT2G02170.1 (Remorin family protein )

HSP 1 Score: 53.5 bits (127), Expect = 3.0e-07
Identity = 34/115 (29.57%), Postives = 61/115 (53.04%), Query Frame = 0

Query: 157 RNLVPTKADVWERNKMEKISKRYQKIKASILAWENEKKMRAKLHMEKKKVELERQKALVL 216
           +++   +A  WE  +  K   R+++ +  I AWEN +K +++  M+K +V++ER K    
Sbjct: 370 KSVSEARATAWEEAEKAKHMARFRREEMKIQAWENHQKAKSEAEMKKTEVKVERIKGRAQ 429

Query: 217 QYYQENIAQIDQIAGGAMAQLEEKRKKEENKARKTANRIRSTGRLPVTCF-CFQY 271
               + +A I++ A    A  E K+  +  K  K A +IR TG++P   F CF +
Sbjct: 430 DRLMKKLATIERKAEEKRAAAEAKKDHQAAKTEKQAEQIRRTGKVPSLLFSCFSF 484

BLAST of Clc04G12420 vs. TAIR 10
Match: AT2G02170.2 (Remorin family protein )

HSP 1 Score: 53.5 bits (127), Expect = 3.0e-07
Identity = 34/115 (29.57%), Postives = 61/115 (53.04%), Query Frame = 0

Query: 157 RNLVPTKADVWERNKMEKISKRYQKIKASILAWENEKKMRAKLHMEKKKVELERQKALVL 216
           +++   +A  WE  +  K   R+++ +  I AWEN +K +++  M+K +V++ER K    
Sbjct: 370 KSVSEARATAWEEAEKAKHMARFRREEMKIQAWENHQKAKSEAEMKKTEVKVERIKGRAQ 429

Query: 217 QYYQENIAQIDQIAGGAMAQLEEKRKKEENKARKTANRIRSTGRLPVTCF-CFQY 271
               + +A I++ A    A  E K+  +  K  K A +IR TG++P   F CF +
Sbjct: 430 DRLMKKLATIERKAEEKRAAAEAKKDHQAAKTEKQAEQIRRTGKVPSLLFSCFSF 484

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038893935.14.5e-12287.45uncharacterized protein LOC120082729 [Benincasa hispida][more]
XP_008447778.11.6e-11483.27PREDICTED: remorin isoform X2 [Cucumis melo][more]
XP_008447698.16.5e-11381.85PREDICTED: remorin isoform X1 [Cucumis melo][more]
TYJ98919.12.1e-11183.83remorin isoform X1 [Cucumis melo var. makuwa][more]
XP_022137546.14.7e-11181.18uncharacterized protein At3g61260 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3BHL87.5e-11583.27remorin isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490088 PE=3 SV=1[more]
A0A1S3BI003.2e-11381.85remorin isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490088 PE=3 SV=1[more]
A0A5D3BIU61.0e-11183.83Remorin isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G0... [more]
A0A6J1C6Y12.3e-11181.18uncharacterized protein At3g61260 OS=Momordica charantia OX=3673 GN=LOC111008969... [more]
A0A0A0LTG18.6e-11183.15Remorin_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G038990 P... [more]
Match NameE-valueIdentityDescription
AT5G61280.19.3e-2532.48Remorin family protein [more]
AT1G13920.11.2e-1629.19Remorin family protein [more]
AT1G69325.12.9e-1033.66Remorin family protein [more]
AT2G02170.13.0e-0729.57Remorin family protein [more]
AT2G02170.23.0e-0729.57Remorin family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 234..254
NoneNo IPR availableCOILSCoilCoilcoord: 172..211
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..140
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..135
NoneNo IPR availablePANTHERPTHR31471OS02G0116800 PROTEINcoord: 20..267
NoneNo IPR availablePANTHERPTHR31471:SF5GB|AAD39278.1coord: 20..267
IPR005516Remorin, C-terminalPFAMPF03763Remorin_Ccoord: 162..263
e-value: 1.9E-25
score: 88.8

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc04G12420.2Clc04G12420.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010033 response to organic substance
biological_process GO:1901700 response to oxygen-containing compound
biological_process GO:0006950 response to stress