Clc04G12140 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G12140
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Protein of unknown function (DUF1118)
Location	ClcChr04: 25687173 .. 25688570 (-)
RNA-Seq Expression	Clc04G12140
Synteny	Clc04G12140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAACACGTGGAAAATCCAATATCTCAATTCTGAAAACTAATCCAACTACCTACCTTTTCCATCATTCATTTCCATGGTGCGGGCCTCAGCAATTCTGTCATTCAGATTCTGCCCTAACCATCGCCATTCTTCACTCTTCACACACACTCTGCTCGAGATACACGGATATGGAGGTCACTTCTTTCTGTAGCAGCAGCAGAGCAGCTTCGTTCGTCTACTCCTATCCATCCAAAACGACTTCAACAAAACAATCTCTTCATGTATACTCCATGGCCGCCGAGAAATCTCCCCCGTCTGCCGCTAAAACCGTCGGCTCCAAGAAGGTTAGTTCCTATATTTCACGTTTTTCTTCCTATCAATTTCCCCAATTCCAAGACTGAAGAGCCAGCATTGTGCAGATAAACTCCACGGTGTTCCCTCTCGGCGAAAAAGGACCGAGGAGCAGCATCTCGCTTTCGACCTCGCCGCCGATTAAGCTACTGACGAGAGTGGAGCAATTGAAGCTACTGAGCAAGGCGGAGAAGGCCGGTCTGCTGTCTGCCGCGGAGAAAGCCGGGTTGTCTCTGTCGTCGATTGAGAAATTAGGGCTTCTGTCGAAGGCTGAGGAATTAGGGATTTTATCGGCGGCGACAGATCCAGGAACTCCCGGAGCGCTACTGAGCCTGAGCTTAGGGCTGTTGCTATTGGGGCCTTCGTGTGTGTATTTGGTACCGGAGGACAATGTATGGGAGATCGTATTGCAGGTGGCGGTGGCTCTGGTCTCCGTCGTGGGCGGCTCTGCGGCGTTTGCTGCGTCGAATTTGGTGTCGAATTTGCAGAGATCGAATTGAATTTCAGCGTTGGAGTTTTCCAATGGCAGCCATGGGAGTTGTAGTGATCAGTATCAACTTTCCTTCTCCTTCCATGTCCTCGTTTTGTCTGCTGCCATTATTGAAATTTATCATTTTCCGGCGAACTGAAATGGCGATATGTGAACGGAAAATTCTCTGCCCTCAATTTTATACCAATGCCGATACAAAATTATAATATTAACGCATACGTTATATAACAACGTTATATATTCAAACCTACTTTTATCAAATCATTACGTTATGCATTTTTGTTAATTTAATTTGTTTAAACAAATTAAATTTATTTTCGTAATAAATCTTTTCCATTTTTCAACTCAAATTGATTATAATAGAATGTAGAAAATAGTATTGTGTTTGAATCTGCATCTTTGATTTCCACATTCTATTACTTAGAAATAGATGATGATCGGTTTCATAATTTTTTCTTCTTCTTTTCAATGGCTTCATTATGGGAGGTTGGACTTCCCAATAGTCTTGTTGTGATTCCCAAATAGGGTCTTATCATGTATGGTAACCCTTCACGCTGAAGCGAGAATAGTTTAA

mRNA sequence

ATGAGAACACGTGGAAAATCCAATATCTCAATTCTGAAAACTAATCCAACTACCTACCTTTTCCATCATTCATTTCCATGGTGCGGGCCTCAGCAATTCTGTCATTCAGATTCTGCCCTAACCATCGCCATTCTTCACTCTTCACACACACTCTGCTCGAGATACACGGATATGGAGGTCACTTCTTTCTGTAGCAGCAGCAGAGCAGCTTCGTTCGTCTACTCCTATCCATCCAAAACGACTTCAACAAAACAATCTCTTCATGTATACTCCATGGCCGCCGAGAAATCTCCCCCGTCTGCCGCTAAAACCGTCGGCTCCAAGAAGATAAACTCCACGGTGTTCCCTCTCGGCGAAAAAGGACCGAGGAGCAGCATCTCGCTTTCGACCTCGCCGCCGATTAAGCTACTGACGAGAGTGGAGCAATTGAAGCTACTGAGCAAGGCGGAGAAGGCCGGTCTGCTGTCTGCCGCGGAGAAAGCCGGGTTGTCTCTGTCGTCGATTGAGAAATTAGGGCTTCTGTCGAAGGCTGAGGAATTAGGGATTTTATCGGCGGCGACAGATCCAGGAACTCCCGGAGCGCTACTGAGCCTGAGCTTAGGGCTGTTGCTATTGGGGCCTTCGTGTGTGTATTTGGTACCGGAGGACAATGTATGGGAGATCGTATTGCAGGTGGCGGTGGCTCTGGTCTCCGTCGTGGGCGGCTCTGCGGCGTTTGCTGCGTCGAATTTGGTGTCGAATTTGCAGAGATCGAATTGAATTTCAGCGTTGGAGTTTTCCAATGGCAGCCATGGGAGTTGTAGTGATCAGTATCAACTTTCCTTCTCCTTCCATGTCCTCGTTTTGTCTGCTGCCATTATTGAAATTTATCATTTTCCGGCGAACTGAAATGGCGATATGTGAACGGAAAATTCTCTGCCCTCAATTTTATACCAATGCCGATACAAAATTATAATATTAACGCATACGTTATATAACAACGTTATATATTCAAACCTACTTTTATCAAATCATTACGTTATGCATTTTTGTTAATTTAATTTGTTTAAACAAATTAAATTTATTTTCGTAATAAATCTTTTCCATTTTTCAACTCAAATTGATTATAATAGAATGTAGAAAATAGTATTGTGTTTGAATCTGCATCTTTGATTTCCACATTCTATTACTTAGAAATAGATGATGATCGGTTTCATAATTTTTTCTTCTTCTTTTCAATGGCTTCATTATGGGAGGTTGGACTTCCCAATAGTCTTGTTGTGATTCCCAAATAGGGTCTTATCATGTATGGTAACCCTTCACGCTGAAGCGAGAATAGTTTAA

Coding sequence (CDS)

ATGAGAACACGTGGAAAATCCAATATCTCAATTCTGAAAACTAATCCAACTACCTACCTTTTCCATCATTCATTTCCATGGTGCGGGCCTCAGCAATTCTGTCATTCAGATTCTGCCCTAACCATCGCCATTCTTCACTCTTCACACACACTCTGCTCGAGATACACGGATATGGAGGTCACTTCTTTCTGTAGCAGCAGCAGAGCAGCTTCGTTCGTCTACTCCTATCCATCCAAAACGACTTCAACAAAACAATCTCTTCATGTATACTCCATGGCCGCCGAGAAATCTCCCCCGTCTGCCGCTAAAACCGTCGGCTCCAAGAAGATAAACTCCACGGTGTTCCCTCTCGGCGAAAAAGGACCGAGGAGCAGCATCTCGCTTTCGACCTCGCCGCCGATTAAGCTACTGACGAGAGTGGAGCAATTGAAGCTACTGAGCAAGGCGGAGAAGGCCGGTCTGCTGTCTGCCGCGGAGAAAGCCGGGTTGTCTCTGTCGTCGATTGAGAAATTAGGGCTTCTGTCGAAGGCTGAGGAATTAGGGATTTTATCGGCGGCGACAGATCCAGGAACTCCCGGAGCGCTACTGAGCCTGAGCTTAGGGCTGTTGCTATTGGGGCCTTCGTGTGTGTATTTGGTACCGGAGGACAATGTATGGGAGATCGTATTGCAGGTGGCGGTGGCTCTGGTCTCCGTCGTGGGCGGCTCTGCGGCGTTTGCTGCGTCGAATTTGGTGTCGAATTTGCAGAGATCGAATTGA

Protein sequence

MRTRGKSNISILKTNPTTYLFHHSFPWCGPQQFCHSDSALTIAILHSSHTLCSRYTDMEVTSFCSSSRAASFVYSYPSKTTSTKQSLHVYSMAAEKSPPSAAKTVGSKKINSTVFPLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLSKAEELGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDNVWEIVLQVAVALVSVVGGSAAFAASNLVSNLQRSN

Homology

[Close]

BLAST of Clc04G12140 vs. NCBI nr
Match: XP_038893804.1 (uncharacterized protein LOC120082623 [Benincasa hispida])

HSP 1 Score: 326.6 bits (836), Expect = 1.8e-85
Identity = 182/195 (93.33%), Postives = 191/195 (97.95%), Query Frame = 0


Query: 58  MEVTSFCSSSRAASFVYSYPSKTTSTKQSLHVYSMAAEKSPPSAAKTVGSKKINSTVFPL 117
           MEV+SFCSSSRAASFV+SYPSKT S K+SLH++SMAAEK PPSAAKTVGSKKINSTVFPL
Sbjct: 1   MEVSSFCSSSRAASFVFSYPSKTNSRKRSLHLHSMAAEKPPPSAAKTVGSKKINSTVFPL 60

Query: 118 GEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLSKA 177
           GEKGPR+SISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLSKA
Sbjct: 61  GEKGPRTSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLSKA 120

Query: 178 EELGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDNVWEIVLQVAVALVSVVGGSA 237
           EELGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPED+VW+I LQV+VALVSVVGGSA
Sbjct: 121 EELGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWQIALQVSVALVSVVGGSA 180

Query: 238 AFAASNLVSNLQRSN 253
           AFAASNLVSNLQRSN
Sbjct: 181 AFAASNLVSNLQRSN 195

[Close]

BLAST of Clc04G12140 vs. NCBI nr
Match: XP_008451074.1 (PREDICTED: uncharacterized protein LOC103492437 [Cucumis melo] >TYJ98942.1 hypothetical protein E5676_scaffold248G001430 [Cucumis melo var. makuwa])

HSP 1 Score: 319.7 bits (818), Expect = 2.3e-83
Identity = 182/197 (92.39%), Postives = 191/197 (96.95%), Query Frame = 0


Query: 58  MEVTSFCSSS-RAASFVYSYPSKTTS-TKQSLHVYSMAAEKSPPSAAKTVGSKKINSTVF 117
           MEVTSFCSSS RAASF+YSYPS TTS  K+ LH++SMAAEK PPSA+KTVGSKKIN+TVF
Sbjct: 1   MEVTSFCSSSTRAASFIYSYPSTTTSRRKRPLHLHSMAAEKPPPSASKTVGSKKINTTVF 60

Query: 118 PLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLS 177
           PLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLS
Sbjct: 61  PLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLS 120

Query: 178 KAEELGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDNVWEIVLQVAVALVSVVGG 237
           KAEELG+LSAATDPGTPGALLSLSLGLLLLGPSCVYLVPED+VWEIVLQVAVALVS+VGG
Sbjct: 121 KAEELGVLSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIVLQVAVALVSIVGG 180

Query: 238 SAAFAASNLVSNLQRSN 253
           SAAFAASNLVSNLQRSN
Sbjct: 181 SAAFAASNLVSNLQRSN 197

[Close]

BLAST of Clc04G12140 vs. NCBI nr
Match: XP_004137438.1 (uncharacterized protein LOC101204037 [Cucumis sativus] >KGN64060.1 hypothetical protein Csa_013877 [Cucumis sativus])

HSP 1 Score: 315.5 bits (807), Expect = 4.3e-82
Identity = 181/197 (91.88%), Postives = 189/197 (95.94%), Query Frame = 0


Query: 58  MEVTSFCSSS-RAASFVYSYPSKTTS-TKQSLHVYSMAAEKSPPSAAKTVGSKKINSTVF 117
           MEVTSFCSSS RAASF+YSYPS TTS  K+ LH++SMA EK  PSAAKTVGSKKIN+TVF
Sbjct: 1   MEVTSFCSSSTRAASFIYSYPSTTTSRRKRPLHLHSMATEKPLPSAAKTVGSKKINTTVF 60

Query: 118 PLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLS 177
           PLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLS
Sbjct: 61  PLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLS 120

Query: 178 KAEELGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDNVWEIVLQVAVALVSVVGG 237
           KAEELG+LSAATDPGTPGALLSLSLGLLLLGPSCVYLVPED+VWEIVLQVAVALVS+VGG
Sbjct: 121 KAEELGVLSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIVLQVAVALVSIVGG 180

Query: 238 SAAFAASNLVSNLQRSN 253
           SAAFAASNLVSNLQRSN
Sbjct: 181 SAAFAASNLVSNLQRSN 197

[Close]

BLAST of Clc04G12140 vs. NCBI nr
Match: XP_023520287.1 (uncharacterized protein LOC111783600 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 313.2 bits (801), Expect = 2.1e-81
Identity = 178/196 (90.82%), Postives = 184/196 (93.88%), Query Frame = 0


Query: 58  MEVTSFCSSSRAASFVYSYPSKTTSTKQSLHVYSMAAEKSPPSAAKTVGS-KKINSTVFP 117
           MEVTSFC SSRAASFVYSYPSKT S KQSL + SMA +K PPSAAKTV S KK+NSTVFP
Sbjct: 1   MEVTSFCGSSRAASFVYSYPSKTNSRKQSLDLRSMAVDKPPPSAAKTVASTKKVNSTVFP 60

Query: 118 LGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLSK 177
           LGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLG LSK
Sbjct: 61  LGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGFLSK 120

Query: 178 AEELGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDNVWEIVLQVAVALVSVVGGS 237
           AEELGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPE++VWEI LQ AVALVS+VGGS
Sbjct: 121 AEELGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEESVWEIALQAAVALVSIVGGS 180

Query: 238 AAFAASNLVSNLQRSN 253
           AAFAASNLVSNLQRSN
Sbjct: 181 AAFAASNLVSNLQRSN 196

[Close]

BLAST of Clc04G12140 vs. NCBI nr
Match: XP_022137623.1 (uncharacterized protein LOC111009021 [Momordica charantia])

HSP 1 Score: 305.4 bits (781), Expect = 4.4e-79
Identity = 180/201 (89.55%), Postives = 182/201 (90.55%), Query Frame = 0


Query: 58  MEVTSFCSSSRAASFVYSYPSKT------TSTKQSLHVYSMAAEKSPPSAAKTVGSKKIN 117
           MEVTSFCSSSR  SFVYSYP KT       ST   L V SMAAEK  PSAAKTVGSKKIN
Sbjct: 1   MEVTSFCSSSRGISFVYSYPWKTKSRFDNPSTVSPLLVRSMAAEKPLPSAAKTVGSKKIN 60

Query: 118 STVFPLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKL 177
           STVFPLGEKGPRSSISLSTSP IKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKL
Sbjct: 61  STVFPLGEKGPRSSISLSTSPQIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKL 120

Query: 178 GLLSKAEELGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDNVWEIVLQVAVALVS 237
           GLLSKAEELG+LSAATDPGTPGALLSLSLGLLLLGPSCVYLVPED+VWEIVLQ AVALVS
Sbjct: 121 GLLSKAEELGVLSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIVLQAAVALVS 180

Query: 238 VVGGSAAFAASNLVSNLQRSN 253
           VVGGSAAFAASNLVSNLQRSN
Sbjct: 181 VVGGSAAFAASNLVSNLQRSN 201

[Close]

BLAST of Clc04G12140 vs. ExPASy TrEMBL
Match: A0A5D3BGQ3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001430 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 1.1e-83
Identity = 182/197 (92.39%), Postives = 191/197 (96.95%), Query Frame = 0


Query: 58  MEVTSFCSSS-RAASFVYSYPSKTTS-TKQSLHVYSMAAEKSPPSAAKTVGSKKINSTVF 117
           MEVTSFCSSS RAASF+YSYPS TTS  K+ LH++SMAAEK PPSA+KTVGSKKIN+TVF
Sbjct: 1   MEVTSFCSSSTRAASFIYSYPSTTTSRRKRPLHLHSMAAEKPPPSASKTVGSKKINTTVF 60

Query: 118 PLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLS 177
           PLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLS
Sbjct: 61  PLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLS 120

Query: 178 KAEELGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDNVWEIVLQVAVALVSVVGG 237
           KAEELG+LSAATDPGTPGALLSLSLGLLLLGPSCVYLVPED+VWEIVLQVAVALVS+VGG
Sbjct: 121 KAEELGVLSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIVLQVAVALVSIVGG 180

Query: 238 SAAFAASNLVSNLQRSN 253
           SAAFAASNLVSNLQRSN
Sbjct: 181 SAAFAASNLVSNLQRSN 197

[Close]

BLAST of Clc04G12140 vs. ExPASy TrEMBL
Match: A0A1S3BQ40 (uncharacterized protein LOC103492437 OS=Cucumis melo OX=3656 GN=LOC103492437 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 1.1e-83
Identity = 182/197 (92.39%), Postives = 191/197 (96.95%), Query Frame = 0


Query: 58  MEVTSFCSSS-RAASFVYSYPSKTTS-TKQSLHVYSMAAEKSPPSAAKTVGSKKINSTVF 117
           MEVTSFCSSS RAASF+YSYPS TTS  K+ LH++SMAAEK PPSA+KTVGSKKIN+TVF
Sbjct: 1   MEVTSFCSSSTRAASFIYSYPSTTTSRRKRPLHLHSMAAEKPPPSASKTVGSKKINTTVF 60

Query: 118 PLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLS 177
           PLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLS
Sbjct: 61  PLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLS 120

Query: 178 KAEELGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDNVWEIVLQVAVALVSVVGG 237
           KAEELG+LSAATDPGTPGALLSLSLGLLLLGPSCVYLVPED+VWEIVLQVAVALVS+VGG
Sbjct: 121 KAEELGVLSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIVLQVAVALVSIVGG 180

Query: 238 SAAFAASNLVSNLQRSN 253
           SAAFAASNLVSNLQRSN
Sbjct: 181 SAAFAASNLVSNLQRSN 197

[Close]

BLAST of Clc04G12140 vs. ExPASy TrEMBL
Match: A0A0A0LQ98 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039250 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 2.1e-82
Identity = 181/197 (91.88%), Postives = 189/197 (95.94%), Query Frame = 0


Query: 58  MEVTSFCSSS-RAASFVYSYPSKTTS-TKQSLHVYSMAAEKSPPSAAKTVGSKKINSTVF 117
           MEVTSFCSSS RAASF+YSYPS TTS  K+ LH++SMA EK  PSAAKTVGSKKIN+TVF
Sbjct: 1   MEVTSFCSSSTRAASFIYSYPSTTTSRRKRPLHLHSMATEKPLPSAAKTVGSKKINTTVF 60

Query: 118 PLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLS 177
           PLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLS
Sbjct: 61  PLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLS 120

Query: 178 KAEELGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDNVWEIVLQVAVALVSVVGG 237
           KAEELG+LSAATDPGTPGALLSLSLGLLLLGPSCVYLVPED+VWEIVLQVAVALVS+VGG
Sbjct: 121 KAEELGVLSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIVLQVAVALVSIVGG 180

Query: 238 SAAFAASNLVSNLQRSN 253
           SAAFAASNLVSNLQRSN
Sbjct: 181 SAAFAASNLVSNLQRSN 197

[Close]

BLAST of Clc04G12140 vs. ExPASy TrEMBL
Match: A0A6J1CAU4 (uncharacterized protein LOC111009021 OS=Momordica charantia OX=3673 GN=LOC111009021 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 2.1e-79
Identity = 180/201 (89.55%), Postives = 182/201 (90.55%), Query Frame = 0


Query: 58  MEVTSFCSSSRAASFVYSYPSKT------TSTKQSLHVYSMAAEKSPPSAAKTVGSKKIN 117
           MEVTSFCSSSR  SFVYSYP KT       ST   L V SMAAEK  PSAAKTVGSKKIN
Sbjct: 1   MEVTSFCSSSRGISFVYSYPWKTKSRFDNPSTVSPLLVRSMAAEKPLPSAAKTVGSKKIN 60

Query: 118 STVFPLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKL 177
           STVFPLGEKGPRSSISLSTSP IKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKL
Sbjct: 61  STVFPLGEKGPRSSISLSTSPQIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKL 120

Query: 178 GLLSKAEELGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDNVWEIVLQVAVALVS 237
           GLLSKAEELG+LSAATDPGTPGALLSLSLGLLLLGPSCVYLVPED+VWEIVLQ AVALVS
Sbjct: 121 GLLSKAEELGVLSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDSVWEIVLQAAVALVS 180

Query: 238 VVGGSAAFAASNLVSNLQRSN 253
           VVGGSAAFAASNLVSNLQRSN
Sbjct: 181 VVGGSAAFAASNLVSNLQRSN 201

[Close]

BLAST of Clc04G12140 vs. ExPASy TrEMBL
Match: A0A6J1K230 (uncharacterized protein LOC111490350 OS=Cucurbita maxima OX=3661 GN=LOC111490350 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 6.2e-79
Identity = 175/201 (87.06%), Postives = 182/201 (90.55%), Query Frame = 0


Query: 58  MEVTSFCSSSRAASFVYSYPSKTTSTKQS------LHVYSMAAEKSPPSAAKTVGSKKIN 117
           MEV S  SS+RAASF+YSYP KT S  Q+      LHV++MAAEK P SA KT+GSKKIN
Sbjct: 1   MEVASLTSSNRAASFIYSYPPKTKSKNQNPSTFSPLHVHAMAAEKPPSSALKTLGSKKIN 60

Query: 118 STVFPLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKL 177
           STVFPLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKL
Sbjct: 61  STVFPLGEKGPRSSISLSTSPPIKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKL 120

Query: 178 GLLSKAEELGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDNVWEIVLQVAVALVS 237
           GLLSKAEELGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPED VWEIVLQ A ALVS
Sbjct: 121 GLLSKAEELGILSAATDPGTPGALLSLSLGLLLLGPSCVYLVPEDTVWEIVLQAAAALVS 180

Query: 238 VVGGSAAFAASNLVSNLQRSN 253
           V+GGSAAFAASNLVSNLQRSN
Sbjct: 181 VMGGSAAFAASNLVSNLQRSN 201

[Close]

BLAST of Clc04G12140 vs. TAIR 10
Match: AT5G08050.1 (Protein of unknown function (DUF1118) )

HSP 1 Score: 173.3 bits (438), Expect = 2.4e-43
Identity = 106/168 (63.10%), Postives = 127/168 (75.60%), Query Frame = 0


Query: 86  SLHVYSMAAEKSPPSAA-KTVGSKKINSTVFPLGEKGPRSSISLSTSPPIKLLTRVEQLK 145
           SL V+SMA +K  PSAA +T+ SKK  +T                  P +KLLTRVEQLK
Sbjct: 9   SLTVHSMANKKPSPSAATRTITSKKSTAT------------------PQVKLLTRVEQLK 68

Query: 146 LLSKAEKAGLLSAAEKAGLSLSSIEKLGLLSKAEELGILSAATDPGTPGALLSLSLGLLL 205
           LL+KAEKAGLLS AEK+G SLS+IE+LGLL+KAEE G+LSAAT+P TPG L +LSLGLLL
Sbjct: 69  LLTKAEKAGLLSLAEKSGFSLSTIERLGLLTKAEEFGVLSAATNPETPGTLFTLSLGLLL 128

Query: 206 LGPSCVYLVPEDNVWEIVLQVAVALVSVVGGSAAFAASNLVSNLQRSN 253
           LGP   Y+VPED  WE+V+QV VAL+SV+GGSAAFAAS  VSNLQ+S+
Sbjct: 129 LGPVFAYVVPEDYTWEVVIQVLVALLSVLGGSAAFAASGFVSNLQKSD 158

[Close]

BLAST of Clc04G12140 vs. TAIR 10
Match: AT1G74730.1 (Protein of unknown function (DUF1118) )

HSP 1 Score: 62.0 bits (149), Expect = 7.9e-10
Identity = 46/121 (38.02%), Postives = 70/121 (57.85%), Query Frame = 0


Query: 134 IKLLTRVEQLKLLSKAEKAGLLSAAEKAGLSLSSIEKLGLLSKAEELGILSAATD-PGT- 193
           + +  ++E+ K+LS  EK+GLLS AE  GL+LSS+EKL + SKAE+LG+LS   +  GT 
Sbjct: 78  VDVFKKLEKRKVLSNVEKSGLLSKAEGLGLTLSSLEKLKVFSKAEDLGLLSLLENLAGTS 137

Query: 194 PGALLSLSLGLLLLGPSCVYLVPEDNVWEIVLQVAVALVSVVGGSAAFAASNLVSNLQRS 253
           P  L S +L  L      V L+P+D+   +V Q  +A    + G      S ++  LQ +
Sbjct: 138 PAVLASAALPALTAAIVAVVLIPDDSTTLVVAQAVLAGALALTGVVLLVGSVVLDGLQEA 197

The following BLAST results are available for this feature:

BLAST of Clc04G12140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893804.1	1.8e-85	93.33	uncharacterized protein LOC120082623 [Benincasa hispida]	[more]
XP_008451074.1	2.3e-83	92.39	PREDICTED: uncharacterized protein LOC103492437 [Cucumis melo] >TYJ98942.1 hypot...	[more]
XP_004137438.1	4.3e-82	91.88	uncharacterized protein LOC101204037 [Cucumis sativus] >KGN64060.1 hypothetical ...	[more]
XP_023520287.1	2.1e-81	90.82	uncharacterized protein LOC111783600 [Cucurbita pepo subsp. pepo]	[more]
XP_022137623.1	4.4e-79	89.55	uncharacterized protein LOC111009021 [Momordica charantia]	[more]

BLAST of Clc04G12140 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc04G12140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BGQ3	1.1e-83	92.39	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BQ40	1.1e-83	92.39	uncharacterized protein LOC103492437 OS=Cucumis melo OX=3656 GN=LOC103492437 PE=...	[more]
A0A0A0LQ98	2.1e-82	91.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039250 PE=4 SV=1	[more]
A0A6J1CAU4	2.1e-79	89.55	uncharacterized protein LOC111009021 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A6J1K230	6.2e-79	87.06	uncharacterized protein LOC111490350 OS=Cucurbita maxima OX=3661 GN=LOC111490350...	[more]

BLAST of Clc04G12140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08050.1	2.4e-43	63.10	Protein of unknown function (DUF1118)	[more]
AT1G74730.1	7.9e-10	38.02	Protein of unknown function (DUF1118)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009500	Protein of unknown function DUF1118	PFAM	PF06549	DUF1118	coord: 139..251 e-value: 1.8E-47 score: 160.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G12140.1	Clc04G12140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090391	granum assembly
biological_process	GO:0010196	nonphotochemical quenching
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0010027	thylakoid membrane organization
cellular_component	GO:0009515	granal stacked thylakoid
cellular_component	GO:0016021	integral component of membrane