Clc04G11893 (gene) Watermelon (cordophanus) v2

Overview
NameClc04G11893
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionGTPase IMAP family member 1, putative
LocationClcChr04: 25465932 .. 25468373 (-)
RNA-Seq ExpressionClc04G11893
SyntenyClc04G11893
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTGAATCTAAATTAATATGAACAAATCAGATTCTAAAAAGAAATATATATATATTATTAATTCGAGTCATACTATATTTAATTGAGATAATATCCACGCCAATGTTCATCCATTTTAAAGGAACCGTTAAACCAAAAACATCGCCACCCCAACTTTATAATATTCTTATTATTATCTTCCAAATAAAGTTAAATTTCTTTAATCAAATATTTTAGAATTGAAACTAATAATTGGTTATTTCTCATTAAAAAGCATATTAATAATCCATACTGAACAAACTCGTTTTTGATTTGCCATTTACACATATAACCCTTCCAAAGGGTAATTTAACAAACAAAAATGTCCAAATTACTTTATACTATTATATAAACTTAGCAATGTGAGGGAGAGGGAACTCAAAATTAAAAGTGTTATCATTCTCACCTTCAAAATTATGATCATTCTTCTTAGAAGAATTATAAGTGCTATCAATAACTTCTTTAGTCTAATTACAAACTTCTTTAACACTTTAATATTATTCCGATCCCAACCGAATGACCTAGTAACAGAAACCCGTCACGAGCCGCCAGGCTCGAGGCCGCGAACCGCGGCGGAGATGGTAATGCAATGGGAAAAATTGATGGTTACATTTTGTGTAGCCTCAGCCATTGCCATAGCCACCGTATCACTTCAAATTGAAACCAGGCTTTCATTAATGTTTCATTTTCTGTCAGTTATGTTAATGGGTTGTTTTGTTTTTACAGCCTTAGCCAAAGTCATTAATGTTAAGCAGCAAAGGGTTTCTCAAATTTTGTATTGTTTTGGTGGGTTTTGGTTTGTTACTGCCTTCTTCATTGCCATTGCCATTCCTTATGCATTTGAGTTCCAAATTTTAACATTGGTCATCTATCTCTTCTTCTTAGTCATCATTTTAATATGTTATTTTGTATAGTAATTGGGTGCACTCCATCTCCATATTTCCCTTTCAATCTTGTCTTTCTTAGAAAAAATAAAAATTTGTCATATGACAACTTGTGACTAACATTTGAAACTGCAGTTTGAAATGTACCCAAATATTTTTATTTTATATATATAATTGAACATGTTGGTAAACCAAGGACTACCTGCCCTACTCTCTTAAATTTTGTAAATTTTGCATAAATATAACAATTTGGTTTAATTGGCCAAAGGAAAAGGGAATTCAGTGATTATTGATATTTAGAGGAGAAATACTTGGCAAAGCCACAAATTCTGCCACAAATTTTATATAGGAACACTATATGTATAAGTCTAAGAAAAAAAATTATTTACAAATGAATGTAAAAAATTGTATTCATAACTTCATAAATTAGCTAATTTAATATATAACTATTGGGCTCGACGAGTTTTCATGTTTTGAAATCGATTCATGATAACTTTAATATCTAGTTTATCAAATAAATTCTTTTAAATTGATGCACCTAATTGAGTTCGATACTCAACTTGTACTTGATTAGGGATCCTAAATTCTTAGTATATATGTTGTTTTTGTTTCAAAAGAGCCTCACATTTACCCAAAGCCTTATTGTGTGCACTATTATGACCACCAACAAGAATATGCAATTTCTCTTTTTTCTTCCAATTGGAAAAATTCTTCACTAACAAAACATTCACCTCTTGACTCTTCACTTACTTCTGATTTGAATAGATAATAACATGAACAAAATGCAACATCCTTTAAAATGCTATATTCTAACCAATTAGAATATTTATTAAACCAAGTTGGATTAGATAGTCTTGACTTTGTACCAAATTTCTTAAGTGGAAAAATATAATATTCGATGTTGACAAGGGTCTTTTAGTAAATATGCTCAACGAACTTGATCTCGAATATTATAATTATAATCATAAATTTTGGTTCTTAGAGCAAGATATGCAGGTAGTTCTTCTAGATTGATTTTTGTATAAGATCTATCAAAATCCAAACTATTTTTCTTCGTTGAAGATGATGCCTCCTTAGTTTCTATTTTTTAATATCTCTCCACAGTAATTTTGAATTAACTCTAAAAAATACAAAAAAAAACTTAAAGTCTAAGAAGATTTTAAAACTTACTTTCGTATATTCAAACGAGTGACAACAAATAATCCTCTAGTTTGAACTCTAAAATTAATTTTAAAAACCTATACGAATAATGTAACACCCGTATATAACATGGAAAAAAACGAAAATATATAGAGTGTAATATAAATAGAAAAATTATGTAAAAAAAGAAAAAGAAAAAAAGTTTCTAAACACTCATGATTATGTGCAGCTCACTAGTCATGTATTTTTTTAAAAAGTGGTTCTCACCTTTCTGATGTGGAAACTCAATATATTGTTTAAAGGAACTTTGAAGAATACTTCAGACAACCATCTTACAACAATGCATTATTGGTAAATTCTTTTTATGTTTTTTAACTTTTAAGATTTCTTATGTGA

mRNA sequence

ATGAATCTAATTACAAACTTCTTTAACACTTTAATATTATTCCGATCCCAACCGAATGACCTAGTAACAGAAACCCGTCACGAGCCGCCAGGCTCGAGGCCGCGAACCGCGGCGGAGATGGTAATGCAATGGGAAAAATTGATGGTTACATTTTGTGTAGCCTCAGCCATTGCCATAGCCACCGTATCACTTCAAATTGAAACCAGGCTTTCATTAATGTTTCATTTTCTGTCAGTTATGTTAATGGGTTGTTTTGTTTTTACAGCCTTAGCCAAAGTCATTAATGTTAAGCAGCAAAGGGTTTCTCAAATTTTGTATTGTTTTGGTGGGTTTTGGTTTGTTACTGCCTTCTTCATTGCCATTGCCATTCCTTATGCATTTGAATTTCTTATGTGA

Coding sequence (CDS)

ATGAATCTAATTACAAACTTCTTTAACACTTTAATATTATTCCGATCCCAACCGAATGACCTAGTAACAGAAACCCGTCACGAGCCGCCAGGCTCGAGGCCGCGAACCGCGGCGGAGATGGTAATGCAATGGGAAAAATTGATGGTTACATTTTGTGTAGCCTCAGCCATTGCCATAGCCACCGTATCACTTCAAATTGAAACCAGGCTTTCATTAATGTTTCATTTTCTGTCAGTTATGTTAATGGGTTGTTTTGTTTTTACAGCCTTAGCCAAAGTCATTAATGTTAAGCAGCAAAGGGTTTCTCAAATTTTGTATTGTTTTGGTGGGTTTTGGTTTGTTACTGCCTTCTTCATTGCCATTGCCATTCCTTATGCATTTGAATTTCTTATGTGA

Protein sequence

MNLITNFFNTLILFRSQPNDLVTETRHEPPGSRPRTAAEMVMQWEKLMVTFCVASAIAIATVSLQIETRLSLMFHFLSVMLMGCFVFTALAKVINVKQQRVSQILYCFGGFWFVTAFFIAIAIPYAFEFLM
Homology
BLAST of Clc04G11893 vs. NCBI nr
Match: KAG6584385.1 (hypothetical protein SDJN03_20317, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.9 bits (307), Expect = 2.1e-24
Identity = 69/97 (71.13%), Postives = 78/97 (80.41%), Query Frame = 0

Query: 33  RPRTAAEMVMQWEKLMVTFCVASAIAIATVSLQIETRLSLMFHFLSVMLMGCFVFTALAK 92
           RP +A EM+MQWE +MVTFC+ +AIAIATVS+QI+T+LS MF FLS  LMGCF FT  AK
Sbjct: 51  RPVSAVEMLMQWENMMVTFCMGTAIAIATVSVQIQTKLSPMFQFLSGALMGCFCFTTSAK 110

Query: 93  VINVKQQRVSQILYCFGGFWFVTAFFIAIAIPYAFEF 130
           +I  K QRVS ILY  GGF FVTAFFIAIAIPYAF F
Sbjct: 111 LI--KHQRVSLILYFLGGFCFVTAFFIAIAIPYAFHF 145

BLAST of Clc04G11893 vs. NCBI nr
Match: KAG6572911.1 (hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.4 bits (233), Expect = 8.0e-16
Identity = 55/100 (55.00%), Postives = 69/100 (69.00%), Query Frame = 0

Query: 30  PGSRPRTAAEMVMQWEKLMVTFCVASAIAIATVSLQIETRLSLMFHFLSVMLMGCFVFTA 89
           P      AAEMV +W+ ++V FCV+SAIAIATVS+QIE +L  +F+FLS+ L+ CF F A
Sbjct: 29  PSEAAVAAAEMVEEWKDMIVAFCVSSAIAIATVSVQIEKKLPRVFNFLSLTLLLCFGFVA 88

Query: 90  LAKVINVKQQRVSQILYCFGGFWFVTAFFIAIAIPYAFEF 130
             K+     +RVS+ILYC GG   VTA FIA AIPYA  F
Sbjct: 89  FGKMTKSILKRVSRILYCVGGVLGVTALFIASAIPYASYF 128

BLAST of Clc04G11893 vs. NCBI nr
Match: KAE8652531.1 (hypothetical protein Csa_013077, partial [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 9.2e-12
Identity = 43/89 (48.31%), Postives = 62/89 (69.66%), Query Frame = 0

Query: 37  AAEMVMQWEKLMVTFCVASAIAIATVSLQIETRLSLMFHFLSVMLMGCFVFTALAKVINV 96
           AAEMV +W+ +++ FCV+SAI IATVS+ I+T L   F  LS+ ++ CFV    A++IN 
Sbjct: 12  AAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFVSVVFARMINS 71

Query: 97  KQQRVSQILYCFGGFWFVTAFFIAIAIPY 126
             + +S+ILYC GG  + ++ FIA AIPY
Sbjct: 72  IFETLSKILYCVGGLLYASSCFIATAIPY 100

BLAST of Clc04G11893 vs. NCBI nr
Match: KAF3947053.1 (hypothetical protein CMV_026760 [Castanea mollissima])

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-07
Identity = 44/114 (38.60%), Postives = 66/114 (57.89%), Query Frame = 0

Query: 13  LFRSQPNDLVTETRHEPPGSRPRTAAEMV-MQWEKLMVTFCVASAIAIATVSLQIETRLS 72
           L R  P+ +    + E P        E+   +W +L VTFC+ASAI IA VS+Q+ ++LS
Sbjct: 28  LSRPSPSTVEAIDQAEAPARAAVGVVEVQHKEWTELTVTFCLASAIDIALVSVQVNSQLS 87

Query: 73  LMFHFLSVMLMGCFVFTALAKVINVKQQRVSQILYCFGGFWFVTAFFIAIAIPY 126
             FH LS+ ++  F    ++K I  K    +Q+L  FG F+ +TAFF+AI IP+
Sbjct: 88  TAFHLLSLTILLAFASFVVSKFIKFKFLVSAQVLENFGVFFTMTAFFMAITIPF 141

BLAST of Clc04G11893 vs. NCBI nr
Match: KAF3947054.1 (hypothetical protein CMV_026761 [Castanea mollissima])

HSP 1 Score: 65.9 bits (159), Expect = 3.1e-07
Identity = 41/106 (38.68%), Postives = 64/106 (60.38%), Query Frame = 0

Query: 28  EPPGSRPRTAA--------EMVMQWEKLMVTFCVASAIAIATVSLQIETRLSLMFHFLSV 87
           +P G+ P  AA        ++ M W ++M+ FC+ASAI IA VS+Q++ +LS  FH LS+
Sbjct: 55  DPGGAAPVEAAVSVVVHRHQIQMDWTEIMIGFCLASAIDIALVSVQVQAQLSATFHLLSL 114

Query: 88  MLMGCFVFTALAKVINVKQQRVSQILYCFGGFWFVTAFFIAIAIPY 126
            ++  F    +++ I  K    +Q+L   G F+ VTAFF+AI IP+
Sbjct: 115 AILFAFACFFVSEFIKSKFLVTAQVLQKLGIFFTVTAFFMAITIPF 160

BLAST of Clc04G11893 vs. ExPASy TrEMBL
Match: A0A0A0LQB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.7e-14
Identity = 51/98 (52.04%), Postives = 68/98 (69.39%), Query Frame = 0

Query: 31  GSRPRTAAEMVMQWEKLMVTFCVASAIAIATVSLQIET--RLSLMFHFLSVMLMGCFVFT 90
           G +    AEMV +W++++V  CV+SAI IATVS+QIET  +L   F FLS++++ CF F 
Sbjct: 34  GRKLTMVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLCFGFV 93

Query: 91  ALAKVINVKQQRVSQILYCFGGFWFVTAFFIAIAIPYA 127
             AK+     + VS+ILYC GGF  VTAFFIA AIP+A
Sbjct: 94  GFAKMTKPIFKTVSKILYCVGGFLGVTAFFIATAIPFA 131

BLAST of Clc04G11893 vs. ExPASy TrEMBL
Match: A0A0A0LSX4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.8e-13
Identity = 45/94 (47.87%), Postives = 65/94 (69.15%), Query Frame = 0

Query: 37  AAEMVMQWEKLMVTFCVASAIAIATVSLQIETRLSLMFHFLSVMLMGCFVFTALAKVINV 96
           AAEMV +W+ +++ FCV+SAI IATVS+ I+T L   F  LS+ ++ CFV    A++IN 
Sbjct: 26  AAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFVSVVFARMINS 85

Query: 97  KQQRVSQILYCFGGFWFVTAFFIAIAIPYAFEFL 131
             + +S+ILYC GG  + ++ FIA AIPYA  F+
Sbjct: 86  IFETLSKILYCVGGLLYASSCFIATAIPYASSFI 119

BLAST of Clc04G11893 vs. ExPASy TrEMBL
Match: A0A0A0LCY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.9e-11
Identity = 43/92 (46.74%), Postives = 64/92 (69.57%), Query Frame = 0

Query: 38  AEMVMQWEKLMVTFCVASAIAIATVSLQIETRLSLMFHFLSVMLMGCFVFTALAKVINVK 97
           AEMV + +++++ FC++SAI IATVS+Q +T+L   F FLS+ ++ CF+    A++I+  
Sbjct: 28  AEMVEERKEMIIGFCLSSAIGIATVSVQTKTKLPNSFQFLSIAVLICFLSVGFARMISSI 87

Query: 98  QQRVSQILYCFGGFWFVTAFFIAIAIPYAFEF 130
            + +S+ILYCFGGF   T  FIA AIPY   F
Sbjct: 88  FKTLSKILYCFGGFLCATCCFIATAIPYDTHF 119

BLAST of Clc04G11893 vs. ExPASy TrEMBL
Match: A0A7N2R866 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.2e-10
Identity = 38/86 (44.19%), Postives = 59/86 (68.60%), Query Frame = 0

Query: 42  MQWEKLMVTFCVASAIAIATVSLQIETRLSLMFHFLSVMLMGCFVFTALAKVINVKQQRV 101
           M+W ++++ FC+ASA+ IA +S+Q+ T+L  +FH  S+ ++  F    ++K IN K  R 
Sbjct: 80  MEWAEIVIAFCLASAVDIAILSVQVHTQLPALFHLFSLAILLAFASVVVSKFINPKFLRA 139

Query: 102 SQILYCFGGFWFVTAFFIAIAIPYAF 128
           +Q+L  FG F+ VTAFFIAI IP+ F
Sbjct: 140 AQVLEKFGVFFTVTAFFIAITIPFPF 165

BLAST of Clc04G11893 vs. ExPASy TrEMBL
Match: A0A7N2M5A3 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-08
Identity = 44/106 (41.51%), Postives = 63/106 (59.43%), Query Frame = 0

Query: 28  EPPGSRPRTAAEMV--------MQWEKLMVTFCVASAIAIATVSLQIETRLSLMFHFLSV 87
           +P G+ P  AA +V        M W ++M+ FC+ASAI IA VS+Q+  +LS  FH LS+
Sbjct: 55  DPGGAAPAEAAGLVVVHRHQIHMDWTEIMIGFCLASAIDIALVSVQVHAQLSATFHLLSL 114

Query: 88  MLMGCFVFTALAKVINVKQQRVSQILYCFGGFWFVTAFFIAIAIPY 126
             +  F    +++ I  K    +Q+L   G F+ VTAFFIAIAIP+
Sbjct: 115 AFLFAFACFFVSEFIESKFLVTAQVLQKLGVFFTVTAFFIAIAIPF 160

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6584385.12.1e-2471.13hypothetical protein SDJN03_20317, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6572911.18.0e-1655.00hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8652531.19.2e-1248.31hypothetical protein Csa_013077, partial [Cucumis sativus][more]
KAF3947053.11.8e-0738.60hypothetical protein CMV_026760 [Castanea mollissima][more]
KAF3947054.13.1e-0738.68hypothetical protein CMV_026761 [Castanea mollissima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LQB64.7e-1452.04Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1[more]
A0A0A0LSX46.8e-1347.87Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1[more]
A0A0A0LCY24.9e-1146.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1[more]
A0A7N2R8664.2e-1044.19Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A7N2M5A31.3e-0841.51Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34741IMAP FAMILY MEMBER 1, PUTATIVE-RELATEDcoord: 28..128
NoneNo IPR availablePANTHERPTHR34741:SF2IMAP FAMILY MEMBER 1, PUTATIVE-RELATEDcoord: 28..128

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc04G11893.1Clc04G11893.1mRNA