Clc04G10620 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G10620
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Vacuolar protein sorting-associated protein 55-like protein
Location	ClcChr04: 24151750 .. 24153759 (-)
RNA-Seq Expression	Clc04G10620
Synteny	Clc04G10620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTCATATCTGCAGTGTGAGTCAAATTTATTACTTTATGACAAAATTTACTTTTAACTTTGTAACTAGTTATGTATTCTGATGTACTGTGAAAAAAAATCTAAAAAAACACCCCCCTGGTCGTGCAGGTTAGCTGGGCTTGCGTTTATGTTTTCATCTAGCATCTTGCTTCAGATTTTGGTATGTTTTATTGTGCATTTGTGTATCTTGCTGTTATCATAGTACTCTTTCTGTTGCCTCGTTTTAAAATGAATGGTTTGGATAAATTGATTTGAATCCTCAAATCAAAAGTCTTCTGACATAAGCTGGACACAAATGAATAATCTAGTTTTTTGTTCACGTTTTATTTTGACTTTATTAATTTAATAATAAATAATTTCAATTTTAAAAATTTATAATTAGTTTATGAATTGTATATGCAGTAATTGTATCTTGCATCAAAGCTTGTAATCACTTTCAAATTTAACTACTAACAAGAAGCTGAAAGGCATATATCCTTGTCTTGAAATTCATTTAAGGCTTCCTATTTTCGGGACAAAATGAAAATTTCAAAGAAATTAAATTGGCAGAAAGAAAGATGTGGTTAATATTATTTAATCCAAAAAATATCTCAGTTTCATACTTTATTGCATGTTTTATGATCTTGTTCCTGGTCTTTCTAAAGAGTTTAGGTTGAAGAACCTATATTTATATAATCTAACTATCAATTACATTTATGTATATGATTGGATTTGAGAGGTAAGAACATGGATAGACACTCAGGTGATGAGTGATGACACATTACTCTTTGATATCCTACCAAACCTTTTGACATGTTGCTTTGATGCCAAAGGTTGATTCAGGACAAGAAACACATAAAGTAGATCCAGAATATGTTTGTTAGATAGCAACCTGTAGAACTAATTTGTAAGCGGTTGGGGATTGGAATTGTAAGAGTCACCTTAGAGATTTCAGGCATTACACTTAAGGTTACTGCATAGCACAATTCAAAGAAGTTGTTGGAGGATCTTGTAGTTTCATTCAATCATTCAAAATAGGATACACACGTACACCTACTCAAATTCGTAGTAAATTTCAGGGACTTTAGTCTTATAAGTGAGAGACCTGTTAAAATTGGAGAACCGTCTAATACTTATCGAAACCAAGAACCATATTAAAGGCTCAACAGTTGACCTCACAAATAAAGAACTAACCCATTCTGATAGGCACCAGGCACTAATTAAAGACTATTTTCTTGAGAGGATCCCAGTAAAGAGCTTCCATCATCCAAAGAATGCAGGGTGTCAATGCTTGAGCTTTAGAAGTCATTTGTCCCGCTCTTAATAAATTTGTTATTGCTGCCACTGCCACGGTTCTCCATCAGGAGGATTCTTTTAATACTCTCAGTATAACTGTTAAAATTTTGAACAGACTTCTCTGGAAAGAAATTTTATTAAGGAGAAAAGTTGTGAACCGTATATGATTTATTTTTCATCTGTTTATGCTATCATCATGGCAGGCTTGTGCGCTATACAACAATTGGTGGCCTTTGTTATCAGGTGAATATCAATTTTGTTATTTTGCTCATAGATAACTTTTAATGAGTGCTAATCATGTTTGCTCCGCAGCTTTGATGTACGTGCTTGTTCCAATGCCTTGTTTATTTTTTGGAGGTGGGTCCACACAGTTTCTGATTAGCCGAGATGGTGGAGGGTGAGTATCTCCAAATGTGTGGTAAAATTGAAAATGTAACCATACCAATACTTGAGTGCATCGTCCTTACTTTCATGATCTTAACTTTTTACGTTTCTTTTTGGCACGTTTGTGTCATTGCAACTTCCAGATGGATAGGTGCTGCTAAGTTCTTGACCGGCGCGTCAACTGTTGGGAGTTTGGCAATTCCTATTATCCTCAGGCATGCTCATATGATCGACACAGGAGCCATGTTCATAGAATTCGTTTCCTTCTTCATATTTGTTTGCACTGTGCTGTGCTTCCACCGTGTTAGCCTTGAAGATGATTGGTGA

mRNA sequence

ATGGATCTCATATCTGCAGTGTTAGCTGGGCTTGCGTTTATGTTTTCATCTAGCATCTTGCTTCAGATTTTGGCTTGTGCGCTATACAACAATTGGTGGCCTTTGTTATCAGCTTTGATGTACGTGCTTGTTCCAATGCCTTGTTTATTTTTTGGAGGTGGGTCCACACAGTTTCTGATTAGCCGAGATGGTGGAGGATGGATAGGTGCTGCTAAGTTCTTGACCGGCGCGTCAACTGTTGGGAGTTTGGCAATTCCTATTATCCTCAGGCATGCTCATATGATCGACACAGGAGCCATGTTCATAGAATTCGTTTCCTTCTTCATATTTGTTTGCACTGTGCTGTGCTTCCACCGTGTTAGCCTTGAAGATGATTGGTGA

Coding sequence (CDS)

ATGGATCTCATATCTGCAGTGTTAGCTGGGCTTGCGTTTATGTTTTCATCTAGCATCTTGCTTCAGATTTTGGCTTGTGCGCTATACAACAATTGGTGGCCTTTGTTATCAGCTTTGATGTACGTGCTTGTTCCAATGCCTTGTTTATTTTTTGGAGGTGGGTCCACACAGTTTCTGATTAGCCGAGATGGTGGAGGATGGATAGGTGCTGCTAAGTTCTTGACCGGCGCGTCAACTGTTGGGAGTTTGGCAATTCCTATTATCCTCAGGCATGCTCATATGATCGACACAGGAGCCATGTTCATAGAATTCGTTTCCTTCTTCATATTTGTTTGCACTGTGCTGTGCTTCCACCGTGTTAGCCTTGAAGATGATTGGTGA

Protein sequence

MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW

Homology

[Close]

BLAST of Clc04G10620 vs. NCBI nr
Match: XP_008462591.2 (PREDICTED: vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cucumis melo] >KGN48279.1 hypothetical protein Csa_003934 [Cucumis sativus])

HSP 1 Score: 247.7 bits (631), Expect = 5.4e-62
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI 60
           MDLI AVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI
Sbjct: 1   MDLIFAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI 60

Query: 61  SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRV 120
           SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRV
Sbjct: 61  SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRV 120

Query: 121 SLEDDW 127
           SLEDDW
Sbjct: 121 SLEDDW 126

[Close]

BLAST of Clc04G10620 vs. NCBI nr
Match: KAG6604338.1 (Vacuolar protein sorting-associated protein 55-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 246.9 bits (629), Expect = 9.3e-62
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI 60
           MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI
Sbjct: 78  MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI 137

Query: 61  SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRV 120
           SRDGGGWIGAAKFLTGASTVGSLAIPIILRHA MIDTGAMFIEFVSFFIFVCTVLCFHRV
Sbjct: 138 SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVLCFHRV 197

Query: 121 SLEDDW 127
           SLEDDW
Sbjct: 198 SLEDDW 203

[Close]

BLAST of Clc04G10620 vs. NCBI nr
Match: XP_023543153.1 (vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 246.9 bits (629), Expect = 9.3e-62
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI 60
           MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI
Sbjct: 1   MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI 60

Query: 61  SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRV 120
           SRDGGGWIGAAKFLTGASTVGSLAIPIILRHA MIDTGAMFIEFVSFFIFVCTVLCFHRV
Sbjct: 61  SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVLCFHRV 120

Query: 121 SLEDDW 127
           SLEDDW
Sbjct: 121 SLEDDW 126

[Close]

BLAST of Clc04G10620 vs. NCBI nr
Match: XP_022926166.1 (vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cucurbita moschata])

HSP 1 Score: 244.6 bits (623), Expect = 4.6e-61
Identity = 124/126 (98.41%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI 60
           MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI
Sbjct: 72  MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI 131

Query: 61  SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRV 120
           SRDGGGWIGAAKFLTGASTVGSLAIPIILRHA MIDTGAMFIEFVSFFIFVCTVLC HRV
Sbjct: 132 SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVLCLHRV 191

Query: 121 SLEDDW 127
           SLEDDW
Sbjct: 192 SLEDDW 197

[Close]

BLAST of Clc04G10620 vs. NCBI nr
Match: XP_022972744.1 (vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cucurbita maxima])

HSP 1 Score: 243.4 bits (620), Expect = 1.0e-60
Identity = 125/127 (98.43%), Postives = 125/127 (98.43%), Query Frame = 0


Query: 1   MDL-ISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFL 60
           MDL ISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFL
Sbjct: 47  MDLIISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFL 106

Query: 61  ISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHR 120
            SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHR
Sbjct: 107 TSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHR 166

Query: 121 VSLEDDW 127
           VSLEDDW
Sbjct: 167 VSLEDDW 173

[Close]

BLAST of Clc04G10620 vs. ExPASy Swiss-Prot
Match: Q9AST6 (Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana OX=3702 GN=At1g32410 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 5.9e-27
Identity = 60/108 (55.56%), Postives = 80/108 (74.07%), Query Frame = 0


Query: 8   LAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGW 67
           +A LA + S+ I+LQILACAL+NNWWP+LS +MYVL+PMP LFFGG  +  L +     W
Sbjct: 17  IAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTSLFNESDNSW 76

Query: 68  IGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVL 116
           I AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++  S+ +F+  +L
Sbjct: 77  INAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAIL 124

[Close]

BLAST of Clc04G10620 vs. ExPASy Swiss-Prot
Match: Q9UUH1 (Vacuolar protein sorting-associated protein 55 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=vps55 PE=3 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 1.1e-04
Identity = 30/119 (25.21%), Postives = 58/119 (48.74%), Query Frame = 0


Query: 8   LAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQF-LISRDGGG 67
           + GL+ + +   +L IL+CAL+ NW+PLL  + ++L P+P L     ST    +  +   
Sbjct: 7   IIGLSSVLAVGFMLVILSCALFKNWYPLLIVIPFILAPLPNLLTKKYSTSHDFLQEEDRN 66

Query: 68  WIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDD 126
            +   +F  GA+     A+PI+  +  +I T A  +  V   I    +  + +  ++ +
Sbjct: 67  LLDFGRFTFGATICTGFALPIVFVNVGLIGTAAATMSCVGGSIIFLVITLYSQAFVQHE 125

[Close]

BLAST of Clc04G10620 vs. ExPASy Swiss-Prot
Match: P47111 (Vacuolar protein sorting-associated protein 55 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=VPS55 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.4e-04
Identity = 30/113 (26.55%), Postives = 55/113 (48.67%), Query Frame = 0


Query: 8   LAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGS---TQFLISRDG 67
           +  L+   +   LL IL+CAL++N++PL   L+++L P+P   F  G+   T   +S   
Sbjct: 12  IISLSGFLALGFLLVILSCALFHNYYPLFDILIFLLAPIPNTIFNAGNKYHTSDFMSDSS 71

Query: 68  GGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCF 118
                 A FLTG      +A+P++  H  +I   +  +  +   I   +++ F
Sbjct: 72  NTGQDLAHFLTGMLVTSGIALPVVFYHCQLIGHLSCIMCMIGGLIIYSSIVIF 124

[Close]

BLAST of Clc04G10620 vs. ExPASy TrEMBL
Match: A0A0A0KHI6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G453780 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.6e-62
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI 60
           MDLI AVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI
Sbjct: 1   MDLIFAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI 60

Query: 61  SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRV 120
           SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRV
Sbjct: 61  SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRV 120

Query: 121 SLEDDW 127
           SLEDDW
Sbjct: 121 SLEDDW 126

[Close]

BLAST of Clc04G10620 vs. ExPASy TrEMBL
Match: A0A1S3CIW0 (vacuolar protein sorting-associated protein 55 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500914 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.6e-62
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI 60
           MDLI AVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI
Sbjct: 1   MDLIFAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI 60

Query: 61  SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRV 120
           SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRV
Sbjct: 61  SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRV 120

Query: 121 SLEDDW 127
           SLEDDW
Sbjct: 121 SLEDDW 126

[Close]

BLAST of Clc04G10620 vs. ExPASy TrEMBL
Match: A0A6J1EE43 (vacuolar protein sorting-associated protein 55 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433349 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.2e-61
Identity = 124/126 (98.41%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI 60
           MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI
Sbjct: 72  MDLISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLI 131

Query: 61  SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRV 120
           SRDGGGWIGAAKFLTGASTVGSLAIPIILRHA MIDTGAMFIEFVSFFIFVCTVLC HRV
Sbjct: 132 SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAQMIDTGAMFIEFVSFFIFVCTVLCLHRV 191

Query: 121 SLEDDW 127
           SLEDDW
Sbjct: 192 SLEDDW 197

[Close]

BLAST of Clc04G10620 vs. ExPASy TrEMBL
Match: A0A6J1ICF8 (vacuolar protein sorting-associated protein 55 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471259 PE=3 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 5.0e-61
Identity = 125/127 (98.43%), Postives = 125/127 (98.43%), Query Frame = 0


Query: 1   MDL-ISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFL 60
           MDL ISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFL
Sbjct: 47  MDLIISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFL 106

Query: 61  ISRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHR 120
            SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHR
Sbjct: 107 TSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHR 166

Query: 121 VSLEDDW 127
           VSLEDDW
Sbjct: 167 VSLEDDW 173

[Close]

BLAST of Clc04G10620 vs. ExPASy TrEMBL
Match: A0A6J1HFY6 (vacuolar protein sorting-associated protein 55 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463596 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.5e-61
Identity = 122/124 (98.39%), Postives = 123/124 (99.19%), Query Frame = 0


Query: 3   LISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISR 62
           +ISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFL SR
Sbjct: 24  IISAVLAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLTSR 83

Query: 63  DGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSL 122
           DGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSL
Sbjct: 84  DGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSL 143

Query: 123 EDDW 127
           EDDW
Sbjct: 144 EDDW 147

[Close]

BLAST of Clc04G10620 vs. TAIR 10
Match: AT3G11530.1 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 209.1 bits (531), Expect = 2.0e-54
Identity = 99/113 (87.61%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 14  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKF 73
           MFSSSILLQILACA+Y NWWP+LSALMYV+VPMPC+FFGGGSTQFLISRDGGGWI AAKF
Sbjct: 1   MFSSSILLQILACAIYGNWWPMLSALMYVVVPMPCMFFGGGSTQFLISRDGGGWIDAAKF 60

Query: 74  LTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW 127
           LTGASTVGSLAIPIILRHA MI+TGAM IEF SFFIF+CTV+CFHR SL+DDW
Sbjct: 61  LTGASTVGSLAIPIILRHAQMIETGAMLIEFTSFFIFICTVMCFHRASLDDDW 113

[Close]

BLAST of Clc04G10620 vs. TAIR 10
Match: AT3G11530.2 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 209.1 bits (531), Expect = 2.0e-54
Identity = 99/113 (87.61%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 14  MFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGWIGAAKF 73
           MFSSSILLQILACA+Y NWWP+LSALMYV+VPMPC+FFGGGSTQFLISRDGGGWI AAKF
Sbjct: 1   MFSSSILLQILACAIYGNWWPMLSALMYVVVPMPCMFFGGGSTQFLISRDGGGWIDAAKF 60

Query: 74  LTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW 127
           LTGASTVGSLAIPIILRHA MI+TGAM IEF SFFIF+CTV+CFHR SL+DDW
Sbjct: 61  LTGASTVGSLAIPIILRHAQMIETGAMLIEFTSFFIFICTVMCFHRASLDDDW 113

[Close]

BLAST of Clc04G10620 vs. TAIR 10
Match: AT1G32410.1 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 121.7 bits (304), Expect = 4.2e-28
Identity = 60/108 (55.56%), Postives = 80/108 (74.07%), Query Frame = 0


Query: 8   LAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGW 67
           +A LA + S+ I+LQILACAL+NNWWP+LS +MYVL+PMP LFFGG  +  L +     W
Sbjct: 17  IAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTSLFNESDNSW 76

Query: 68  IGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVL 116
           I AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++  S+ +F+  +L
Sbjct: 77  INAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAIL 124

[Close]

BLAST of Clc04G10620 vs. TAIR 10
Match: AT1G32410.2 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 121.7 bits (304), Expect = 4.2e-28
Identity = 60/108 (55.56%), Postives = 80/108 (74.07%), Query Frame = 0


Query: 8   LAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGW 67
           +A LA + S+ I+LQILACAL+NNWWP+LS +MYVL+PMP LFFGG  +  L +     W
Sbjct: 17  IAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTSLFNESDNSW 76

Query: 68  IGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVL 116
           I AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++  S+ +F+  +L
Sbjct: 77  INAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAIL 124

[Close]

BLAST of Clc04G10620 vs. TAIR 10
Match: AT1G32410.3 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 121.7 bits (304), Expect = 4.2e-28
Identity = 60/108 (55.56%), Postives = 80/108 (74.07%), Query Frame = 0


Query: 8   LAGLAFMFSSSILLQILACALYNNWWPLLSALMYVLVPMPCLFFGGGSTQFLISRDGGGW 67
           +A LA + S+ I+LQILACAL+NNWWP+LS +MYVL+PMP LFFGG  +  L +     W
Sbjct: 17  IAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFFGGSDSTSLFNESDNSW 76

Query: 68  IGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVL 116
           I AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++  S+ +F+  +L
Sbjct: 77  INAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAIL 124

The following BLAST results are available for this feature:

BLAST of Clc04G10620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462591.2	5.4e-62	99.21	PREDICTED: vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cu...	[more]
KAG6604338.1	9.3e-62	99.21	Vacuolar protein sorting-associated protein 55-like protein, partial [Cucurbita ...	[more]
XP_023543153.1	9.3e-62	99.21	vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cucurbita pep...	[more]
XP_022926166.1	4.6e-61	98.41	vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cucurbita mos...	[more]
XP_022972744.1	1.0e-60	98.43	vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cucurbita max...	[more]

BLAST of Clc04G10620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9AST6	5.9e-27	55.56	Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana O...	[more]
Q9UUH1	1.1e-04	25.21	Vacuolar protein sorting-associated protein 55 OS=Schizosaccharomyces pombe (str...	[more]
P47111	2.4e-04	26.55	Vacuolar protein sorting-associated protein 55 OS=Saccharomyces cerevisiae (stra...	[more]

BLAST of Clc04G10620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHI6	2.6e-62	99.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G453780 PE=3 SV=1	[more]
A0A1S3CIW0	2.6e-62	99.21	vacuolar protein sorting-associated protein 55 homolog isoform X1 OS=Cucumis mel...	[more]
A0A6J1EE43	2.2e-61	98.41	vacuolar protein sorting-associated protein 55 homolog isoform X1 OS=Cucurbita m...	[more]
A0A6J1ICF8	5.0e-61	98.43	vacuolar protein sorting-associated protein 55 homolog isoform X1 OS=Cucurbita m...	[more]
A0A6J1HFY6	6.5e-61	98.39	vacuolar protein sorting-associated protein 55 homolog isoform X1 OS=Cucurbita m...	[more]

BLAST of Clc04G10620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11530.1	2.0e-54	87.61	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT3G11530.2	2.0e-54	87.61	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.1	4.2e-28	55.56	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.2	4.2e-28	55.56	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.3	4.2e-28	55.56	Vacuolar protein sorting 55 (VPS55) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007262	Vps55/LEPROT	PFAM	PF04133	Vps55	coord: 9..121 e-value: 1.3E-30 score: 105.7
IPR007262	Vps55/LEPROT	PANTHER	PTHR12050	LEPTIN RECEPTOR-RELATED	coord: 8..125
None	No IPR available	PANTHER	PTHR12050:SF0	RH04491P	coord: 8..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G10620.1	Clc04G10620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane