Clc04G10550 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G10550
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	auxin-responsive protein SAUR50-like
Location	ClcChr04: 24099808 .. 24100738 (+)
RNA-Seq Expression	Clc04G10550
Synteny	Clc04G10550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTTCAGACCTCCATTTTTTCCATGTCCATGGATTCATAGCTTCATCTTCAAAAACCCTAGCTTACTCACCTCTACAATTTCTTCCTTCCTTCCATTTTTCTTACAGATCAGAACAATGCTTGGCAAAAAAATGGTCTCCTTCAAGAAACTCGCCAAGAAAGTGAAGGTCCGAGTCGGAACCGAGAGCGAACCATCGCACAACGAGTGTTTACTCACAGATCGGTTGGAATTAACGGAGGATCACGATTCTCAGTCTCCGTCGTCTCCGACCTCGACGCCGACCGGCTCGTTCGCGATTTACGTTGGCGATGAACGGCAGCGCTTCGTCGTACCGACGAGTTTCTTGTCGCATCCGCTCTTCAGGATGCTGCTCGATAAAGCGTACAGAGAGTTCGGATTCGAGCAGAGGAATGCGCTTGTTGTTCCTTGTAGTGTCTCTGCTTTTCAAGAAATTGTGAGCGCTGTTGAATGCTGCAATGGCAGATTCGATTTCGGCGAGATTGTCGAGGAGTTTCTATAGAACAGGCGAAATGCAGAGGAATATCAGTTCGCTAGGGTTTTGAATCGTTTGATCCTTTCGGTCGTGAAATTCATCGTCGAGGAGGAGGATGCGATACAATTCGATTCGATTCGATTCGATTCAAATGAATTCGGCCGATTTTACTATTCGATTGGGTGTGAAATGTGCATCTCTTCATCTCAAAATTCTAATTCACATCCGATTCGATACGATGATCCATTTTTCTTCAGAAGTTGTAAAATCAGAGCTGTAATTGTGCGATGAAATTGAATATGTAGTTGTAATTAATTTCGTAATATGTATGAATATTGTGTTTAGGTAATTTGTCAAATTTCTTGAAAATTTTCATGGCAGCTGGCATTGGCAAGTCAAGAAATATTACCAAAGAGAAGTGATTTTTCTATTATC

mRNA sequence

CTTTTTCAGACCTCCATTTTTTCCATGTCCATGGATTCATAGCTTCATCTTCAAAAACCCTAGCTTACTCACCTCTACAATTTCTTCCTTCCTTCCATTTTTCTTACAGATCAGAACAATGCTTGGCAAAAAAATGGTCTCCTTCAAGAAACTCGCCAAGAAAGTGAAGGTCCGAGTCGGAACCGAGAGCGAACCATCGCACAACGAGTGTTTACTCACAGATCGGTTGGAATTAACGGAGGATCACGATTCTCAGTCTCCGTCGTCTCCGACCTCGACGCCGACCGGCTCGTTCGCGATTTACGTTGGCGATGAACGGCAGCGCTTCGTCGTACCGACGAGTTTCTTGTCGCATCCGCTCTTCAGGATGCTGCTCGATAAAGCGTACAGAGAGTTCGGATTCGAGCAGAGGAATGCGCTTGTTGTTCCTTGTAGTGTCTCTGCTTTTCAAGAAATTGTGAGCGCTGTTGAATGCTGCAATGGCAGATTCGATTTCGGCGAGATTGTCGAGGAGTTTCTATAGAACAGGCGAAATGCAGAGGAATATCAGTTCGCTAGGGTTTTGAATCGTTTGATCCTTTCGGTCGTGAAATTCATCGTCGAGGAGGAGGATGCGATACAATTCGATTCGATTCGATTCGATTCAAATGAATTCGGCCGATTTTACTATTCGATTGGGTGTGAAATGTGCATCTCTTCATCTCAAAATTCTAATTCACATCCGATTCGATACGATGATCCATTTTTCTTCAGAAGTTGTAAAATCAGAGCTGTAATTGTGCGATGAAATTGAATATGTAGTTGTAATTAATTTCGTAATATGTATGAATATTGTGTTTAGGTAATTTGTCAAATTTCTTGAAAATTTTCATGGCAGCTGGCATTGGCAAGTCAAGAAATATTACCAAAGAGAAGTGATTTTTCTATTATC

Coding sequence (CDS)

ATGCTTGGCAAAAAAATGGTCTCCTTCAAGAAACTCGCCAAGAAAGTGAAGGTCCGAGTCGGAACCGAGAGCGAACCATCGCACAACGAGTGTTTACTCACAGATCGGTTGGAATTAACGGAGGATCACGATTCTCAGTCTCCGTCGTCTCCGACCTCGACGCCGACCGGCTCGTTCGCGATTTACGTTGGCGATGAACGGCAGCGCTTCGTCGTACCGACGAGTTTCTTGTCGCATCCGCTCTTCAGGATGCTGCTCGATAAAGCGTACAGAGAGTTCGGATTCGAGCAGAGGAATGCGCTTGTTGTTCCTTGTAGTGTCTCTGCTTTTCAAGAAATTGTGAGCGCTGTTGAATGCTGCAATGGCAGATTCGATTTCGGCGAGATTGTCGAGGAGTTTCTATAG

Protein sequence

MLGKKMVSFKKLAKKVKVRVGTESEPSHNECLLTDRLELTEDHDSQSPSSPTSTPTGSFAIYVGDERQRFVVPTSFLSHPLFRMLLDKAYREFGFEQRNALVVPCSVSAFQEIVSAVECCNGRFDFGEIVEEFL

Homology

[Close]

BLAST of Clc04G10550 vs. NCBI nr
Match: XP_038883394.1 (auxin-responsive protein SAUR50 [Benincasa hispida])

HSP 1 Score: 263.1 bits (671), Expect = 1.3e-66
Identity = 131/134 (97.76%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MLGKKMVSFKKLAKKVKVRVGTESEPSHNECLLTDRLELTEDHDSQSPSSPTSTPTGSFA 60
           MLGKKMVSFKKLAKKVKVRVGTE+E SHNECLLTDRLELTEDHDS SPSSPTSTPTGSFA
Sbjct: 1   MLGKKMVSFKKLAKKVKVRVGTETEASHNECLLTDRLELTEDHDSHSPSSPTSTPTGSFA 60

Query: 61  IYVGDERQRFVVPTSFLSHPLFRMLLDKAYREFGFEQRNALVVPCSVSAFQEIVSAVECC 120
           IYVGDERQRFVVPTSFLSHPLFRMLLDKAYREFGFEQRNALVVPCSVSAFQEIVSAVECC
Sbjct: 61  IYVGDERQRFVVPTSFLSHPLFRMLLDKAYREFGFEQRNALVVPCSVSAFQEIVSAVECC 120

Query: 121 NGRFDFGEIVEEFL 135
           NGRFDFGEIVEEFL
Sbjct: 121 NGRFDFGEIVEEFL 134

[Close]

BLAST of Clc04G10550 vs. NCBI nr
Match: XP_008462582.1 (PREDICTED: auxin-induced protein X15 [Cucumis melo])

HSP 1 Score: 251.1 bits (640), Expect = 5.2e-63
Identity = 127/135 (94.07%), Postives = 130/135 (96.30%), Query Frame = 0


Query: 1   MLGKKMVSFKKLAKKVK-VRVGTESEPSHNECLLTDRLELTEDHDSQSPSSPTSTPTGSF 60
           ML KKMVSFKKLAKKVK VRVGT+SE SHNECLLTDRLELTEDHDS SPSSPTSTPTG F
Sbjct: 1   MLAKKMVSFKKLAKKVKAVRVGTDSEHSHNECLLTDRLELTEDHDSNSPSSPTSTPTGYF 60

Query: 61  AIYVGDERQRFVVPTSFLSHPLFRMLLDKAYREFGFEQRNALVVPCSVSAFQEIVSAVEC 120
           AIYVGDERQRFVVPTSFLSHPLFRM+LDKAYREFGFEQRNALVVPCSVSAF+EIVSAVEC
Sbjct: 61  AIYVGDERQRFVVPTSFLSHPLFRMVLDKAYREFGFEQRNALVVPCSVSAFEEIVSAVEC 120

Query: 121 CNGRFDFGEIVEEFL 135
           CNGRFDFGEIVEEFL
Sbjct: 121 CNGRFDFGEIVEEFL 135

[Close]

BLAST of Clc04G10550 vs. NCBI nr
Match: KAA0025249.1 (auxin-induced protein X15 [Cucumis melo var. makuwa] >TYK07418.1 auxin-induced protein X15 [Cucumis melo var. makuwa])

HSP 1 Score: 249.2 bits (635), Expect = 2.0e-62
Identity = 127/135 (94.07%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 1   MLGKKMVSFKKLAKKVK-VRVGTESEPSHNECLLTDRLELTEDHDSQSPSSPTSTPTGSF 60
           ML KKMVSFKKLAKKVK VRVGT+SE SHNECLLTDRLELTED DS SPSSPTSTPTG F
Sbjct: 1   MLAKKMVSFKKLAKKVKAVRVGTDSEHSHNECLLTDRLELTEDRDSNSPSSPTSTPTGYF 60

Query: 61  AIYVGDERQRFVVPTSFLSHPLFRMLLDKAYREFGFEQRNALVVPCSVSAFQEIVSAVEC 120
           AIYVGDERQRFVVPTSFLSHPLFRM+LDKAYREFGFEQRNALVVPCSVSAFQEIVSAVEC
Sbjct: 61  AIYVGDERQRFVVPTSFLSHPLFRMVLDKAYREFGFEQRNALVVPCSVSAFQEIVSAVEC 120

Query: 121 CNGRFDFGEIVEEFL 135
           CNGRFDFGEIVEEFL
Sbjct: 121 CNGRFDFGEIVEEFL 135

[Close]

BLAST of Clc04G10550 vs. NCBI nr
Match: XP_031742714.1 (auxin-induced protein 6B [Cucumis sativus])

HSP 1 Score: 246.9 bits (629), Expect = 9.9e-62
Identity = 125/135 (92.59%), Postives = 128/135 (94.81%), Query Frame = 0


Query: 1   MLGKKMVSFKKLAKKVK-VRVGTESEPSHNECLLTDRLELTEDHDSQSPSSPTSTPTGSF 60
           ML KKMVSFKKLAKKVK VRVGTE+E SHNECLLTDR EL  DHDS SPSSPTSTPTGSF
Sbjct: 1   MLAKKMVSFKKLAKKVKAVRVGTETEHSHNECLLTDRFELPADHDSNSPSSPTSTPTGSF 60

Query: 61  AIYVGDERQRFVVPTSFLSHPLFRMLLDKAYREFGFEQRNALVVPCSVSAFQEIVSAVEC 120
           AIYVG+ERQRFVVPTSFLSHPLFRM+LDKAYREFGFEQRNALVVPCSVSAFQEIVSAVEC
Sbjct: 61  AIYVGEERQRFVVPTSFLSHPLFRMVLDKAYREFGFEQRNALVVPCSVSAFQEIVSAVEC 120

Query: 121 CNGRFDFGEIVEEFL 135
           CNGRFDFGEIVEEFL
Sbjct: 121 CNGRFDFGEIVEEFL 135

[Close]

BLAST of Clc04G10550 vs. NCBI nr
Match: XP_022962864.1 (auxin-induced protein 6B-like [Cucurbita moschata])

HSP 1 Score: 245.4 bits (625), Expect = 2.9e-61
Identity = 126/136 (92.65%), Postives = 129/136 (94.85%), Query Frame = 0


Query: 1   MLGKKMVSFKKLAKKVKVRVGTESE-PSHNECLLTDRLELTEDHDSQSPS-SPTSTPTGS 60
           MLGKKMVSFKKLAKKVKVRVGTE E  SHNECLL DRLE ++DHDS SPS SPTSTPTGS
Sbjct: 1   MLGKKMVSFKKLAKKVKVRVGTEGESSSHNECLLRDRLESSKDHDSHSPSPSPTSTPTGS 60

Query: 61  FAIYVGDERQRFVVPTSFLSHPLFRMLLDKAYREFGFEQRNALVVPCSVSAFQEIVSAVE 120
           FA+YVGDERQRFVVPTSFLSHPLFRMLLDKAYREFGFEQRNALVVPCSVSAFQEIVSAVE
Sbjct: 61  FAVYVGDERQRFVVPTSFLSHPLFRMLLDKAYREFGFEQRNALVVPCSVSAFQEIVSAVE 120

Query: 121 CCNGRFDFGEIVEEFL 135
           CCNGRFDFGEIVEEFL
Sbjct: 121 CCNGRFDFGEIVEEFL 136

[Close]

BLAST of Clc04G10550 vs. ExPASy Swiss-Prot
Match: O65695 (Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.4e-12
Identity = 30/67 (44.78%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 51  PTSTPTGSFAIYVGDERQRFVVPTSFLSHPLFRMLLDKAYREFGFEQRNALVVPCSVSAF 110
           P   P G F +YVG+ R R++VP SFL+HP F+ LL +A  EFGF+    L +PC    F
Sbjct: 40  PLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQRAEEEFGFDHDMGLTIPCDELVF 99

Query: 111 QEIVSAV 118
           Q + S +
Sbjct: 100 QTLTSMI 106

[Close]

BLAST of Clc04G10550 vs. ExPASy Swiss-Prot
Match: Q9LTV3 (Auxin-responsive protein SAUR72 OS=Arabidopsis thaliana OX=3702 GN=SAUR72 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.8e-11
Identity = 29/72 (40.28%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 46  QSPSSPTSTPTGSFAIYVGDERQRFVVPTSFLSHPLFRMLLDKAYREFGFEQRNALVVPC 105
           +S    +S P G   +YVGDE +RFVV    L+HP+F  LL+++ +E+G+EQ+  L +PC
Sbjct: 42  RSKKQTSSVPEGHVPVYVGDEMERFVVSAELLNHPVFIGLLNRSAQEYGYEQKGVLQIPC 101

Query: 106 SVSAFQEIVSAV 118
            V  F+ I+ ++
Sbjct: 102 HVLVFERIMESL 113

[Close]

BLAST of Clc04G10550 vs. ExPASy Swiss-Prot
Match: P0DKL1 (Auxin-responsive protein SAUR50 OS=Helianthus annuus OX=4232 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-09
Identity = 26/67 (38.81%), Postives = 37/67 (55.22%), Query Frame = 0


Query: 51  PTSTPTGSFAIYVGDERQRFVVPTSFLSHPLFRMLLDKAYREFGFEQRNALVVPCSVSAF 110
           P   P G F +YVG+ R R++VP S L HP F+ LL ++  EFGF     +++PC    F
Sbjct: 36  PNDVPKGHFVVYVGERRNRYIVPISCLDHPTFQDLLQRSEEEFGFNHDMGIIIPCQEVDF 95

Query: 111 QEIVSAV 118
               S +
Sbjct: 96  LSFFSMI 102

[Close]

BLAST of Clc04G10550 vs. ExPASy Swiss-Prot
Match: P32295 (Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata OX=3916 GN=ARG7 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-09
Identity = 30/74 (40.54%), Postives = 44/74 (59.46%), Query Frame = 0


Query: 45  SQSPSSPTSTPTGSFAIYVGDERQRFVVPTSFLSHPLFRMLLDKAYREFGFEQ-RNALVV 104
           +++ S     P G  A+YVG+  +RFV+P S L+ PLF+ LL +A  EFG++     L +
Sbjct: 16  NEASSKVLDAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTI 75

Query: 105 PCSVSAFQEIVSAV 118
           PCS   FQ I S +
Sbjct: 76  PCSEDLFQHITSCL 89

[Close]

BLAST of Clc04G10550 vs. ExPASy Swiss-Prot
Match: O64538 (Auxin-responsive protein SAUR40 OS=Arabidopsis thaliana OX=3702 GN=SAUR40 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-09
Identity = 24/66 (36.36%), Postives = 47/66 (71.21%), Query Frame = 0


Query: 52  TSTPTGSFAIYVGDERQRFVVPTSFLSHPLFRMLLDKAYREFGFEQRNALVVPCSVSAFQ 111
           +S P+G   + VG++++RFVV    L+HP+F  LL+++ +E+G+ Q+  L +PC+V  F+
Sbjct: 46  SSVPSGHVPVNVGEDKERFVVSAELLNHPVFVGLLNRSAQEYGYTQKGVLHIPCNVFVFE 105

Query: 112 EIVSAV 118
           ++V ++
Sbjct: 106 QVVESL 111

[Close]

BLAST of Clc04G10550 vs. ExPASy TrEMBL
Match: A0A1S3CHA6 (auxin-induced protein X15 OS=Cucumis melo OX=3656 GN=LOC103500907 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.5e-63
Identity = 127/135 (94.07%), Postives = 130/135 (96.30%), Query Frame = 0


Query: 1   MLGKKMVSFKKLAKKVK-VRVGTESEPSHNECLLTDRLELTEDHDSQSPSSPTSTPTGSF 60
           ML KKMVSFKKLAKKVK VRVGT+SE SHNECLLTDRLELTEDHDS SPSSPTSTPTG F
Sbjct: 1   MLAKKMVSFKKLAKKVKAVRVGTDSEHSHNECLLTDRLELTEDHDSNSPSSPTSTPTGYF 60

Query: 61  AIYVGDERQRFVVPTSFLSHPLFRMLLDKAYREFGFEQRNALVVPCSVSAFQEIVSAVEC 120
           AIYVGDERQRFVVPTSFLSHPLFRM+LDKAYREFGFEQRNALVVPCSVSAF+EIVSAVEC
Sbjct: 61  AIYVGDERQRFVVPTSFLSHPLFRMVLDKAYREFGFEQRNALVVPCSVSAFEEIVSAVEC 120

Query: 121 CNGRFDFGEIVEEFL 135
           CNGRFDFGEIVEEFL
Sbjct: 121 CNGRFDFGEIVEEFL 135

[Close]

BLAST of Clc04G10550 vs. ExPASy TrEMBL
Match: A0A5A7SIW6 (Auxin-induced protein X15 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G001450 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 9.6e-63
Identity = 127/135 (94.07%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 1   MLGKKMVSFKKLAKKVK-VRVGTESEPSHNECLLTDRLELTEDHDSQSPSSPTSTPTGSF 60
           ML KKMVSFKKLAKKVK VRVGT+SE SHNECLLTDRLELTED DS SPSSPTSTPTG F
Sbjct: 1   MLAKKMVSFKKLAKKVKAVRVGTDSEHSHNECLLTDRLELTEDRDSNSPSSPTSTPTGYF 60

Query: 61  AIYVGDERQRFVVPTSFLSHPLFRMLLDKAYREFGFEQRNALVVPCSVSAFQEIVSAVEC 120
           AIYVGDERQRFVVPTSFLSHPLFRM+LDKAYREFGFEQRNALVVPCSVSAFQEIVSAVEC
Sbjct: 61  AIYVGDERQRFVVPTSFLSHPLFRMVLDKAYREFGFEQRNALVVPCSVSAFQEIVSAVEC 120

Query: 121 CNGRFDFGEIVEEFL 135
           CNGRFDFGEIVEEFL
Sbjct: 121 CNGRFDFGEIVEEFL 135

[Close]

BLAST of Clc04G10550 vs. ExPASy TrEMBL
Match: A0A0A0KEY4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G452710 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 4.8e-62
Identity = 125/135 (92.59%), Postives = 128/135 (94.81%), Query Frame = 0


Query: 1   MLGKKMVSFKKLAKKVK-VRVGTESEPSHNECLLTDRLELTEDHDSQSPSSPTSTPTGSF 60
           ML KKMVSFKKLAKKVK VRVGTE+E SHNECLLTDR EL  DHDS SPSSPTSTPTGSF
Sbjct: 1   MLAKKMVSFKKLAKKVKAVRVGTETEHSHNECLLTDRFELPADHDSNSPSSPTSTPTGSF 60

Query: 61  AIYVGDERQRFVVPTSFLSHPLFRMLLDKAYREFGFEQRNALVVPCSVSAFQEIVSAVEC 120
           AIYVG+ERQRFVVPTSFLSHPLFRM+LDKAYREFGFEQRNALVVPCSVSAFQEIVSAVEC
Sbjct: 61  AIYVGEERQRFVVPTSFLSHPLFRMVLDKAYREFGFEQRNALVVPCSVSAFQEIVSAVEC 120

Query: 121 CNGRFDFGEIVEEFL 135
           CNGRFDFGEIVEEFL
Sbjct: 121 CNGRFDFGEIVEEFL 135

[Close]

BLAST of Clc04G10550 vs. ExPASy TrEMBL
Match: A0A6J1HIA1 (auxin-induced protein 6B-like OS=Cucurbita moschata OX=3662 GN=LOC111463231 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.4e-61
Identity = 126/136 (92.65%), Postives = 129/136 (94.85%), Query Frame = 0


Query: 1   MLGKKMVSFKKLAKKVKVRVGTESE-PSHNECLLTDRLELTEDHDSQSPS-SPTSTPTGS 60
           MLGKKMVSFKKLAKKVKVRVGTE E  SHNECLL DRLE ++DHDS SPS SPTSTPTGS
Sbjct: 1   MLGKKMVSFKKLAKKVKVRVGTEGESSSHNECLLRDRLESSKDHDSHSPSPSPTSTPTGS 60

Query: 61  FAIYVGDERQRFVVPTSFLSHPLFRMLLDKAYREFGFEQRNALVVPCSVSAFQEIVSAVE 120
           FA+YVGDERQRFVVPTSFLSHPLFRMLLDKAYREFGFEQRNALVVPCSVSAFQEIVSAVE
Sbjct: 61  FAVYVGDERQRFVVPTSFLSHPLFRMLLDKAYREFGFEQRNALVVPCSVSAFQEIVSAVE 120

Query: 121 CCNGRFDFGEIVEEFL 135
           CCNGRFDFGEIVEEFL
Sbjct: 121 CCNGRFDFGEIVEEFL 136

[Close]

BLAST of Clc04G10550 vs. ExPASy TrEMBL
Match: A0A6J1IC38 (auxin-responsive protein SAUR50-like OS=Cucurbita maxima OX=3661 GN=LOC111471159 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.1e-61
Identity = 124/134 (92.54%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MLGKKMVSFKKLAKKVKVRVGTESEPSHNECLLTDRLELTEDHDSQSPSSPTSTPTGSFA 60
           MLGKKMVSFKKLAKKVKVRVGTE E SHNE LL DRLE ++DHDS SP SPTSTPTGSFA
Sbjct: 1   MLGKKMVSFKKLAKKVKVRVGTEGESSHNEYLLRDRLESSKDHDSHSP-SPTSTPTGSFA 60

Query: 61  IYVGDERQRFVVPTSFLSHPLFRMLLDKAYREFGFEQRNALVVPCSVSAFQEIVSAVECC 120
           +YVGDERQRFVVPTSFLSHPLFRMLLDKAYREFGFEQRNALVVPCSVSAFQEIVSAVECC
Sbjct: 61  VYVGDERQRFVVPTSFLSHPLFRMLLDKAYREFGFEQRNALVVPCSVSAFQEIVSAVECC 120

Query: 121 NGRFDFGEIVEEFL 135
           NGRFDFGEIVEEFL
Sbjct: 121 NGRFDFGEIVEEFL 133

[Close]

BLAST of Clc04G10550 vs. TAIR 10
Match: AT2G36210.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 142.5 bits (358), Expect = 2.4e-34
Identity = 79/142 (55.63%), Postives = 102/142 (71.83%), Query Frame = 0


Query: 1   MLGKKMVSFKKLAKKVK-----VRVGTE--SEPSHNECLLTDRLELTEDHDSQSPSSPTS 60
           MLGK++ SFK LAKK+K      R G E  SE ++NE LL +  +       ++    + 
Sbjct: 1   MLGKRIASFKNLAKKMKSINTTTRSGGEGGSESTYNESLLMNEAD-------EAAMMASK 60

Query: 61  TPTGSFAIYVGDERQRFVVPTSFLSHPLFRMLLDKAYREF-GFEQRNALVVPCSVSAFQE 120
           TPTG+FA+YVG+ER + VVPTS+L+HPLFRMLLDK++ EF  FEQ+  LVVPCS+S FQ+
Sbjct: 61  TPTGTFAVYVGEERVKRVVPTSYLNHPLFRMLLDKSHDEFLCFEQKVMLVVPCSLSVFQD 120

Query: 121 IVSAVECCNGRFDFGEIVEEFL 135
           +V+AVE CNG FDFGE VEEFL
Sbjct: 121 VVNAVESCNGNFDFGEFVEEFL 135

[Close]

BLAST of Clc04G10550 vs. TAIR 10
Match: AT5G20810.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 89.0 bits (219), Expect = 3.2e-18
Identity = 48/131 (36.64%), Postives = 78/131 (59.54%), Query Frame = 0


Query: 4   KKMVSFKKLAKKVK-VRVGTESE---------------PSHNECLLTDRLELTEDHDSQS 63
           +++V  K++ +K + V +G +SE               P+ N+ LL  +   +++   QS
Sbjct: 13  RQIVRLKEILQKWQTVTIGPKSEVPPLAAGKQAVAMISPAINKRLLDVKNGDSDEETCQS 72

Query: 64  PSSPTSTPTGSFAIYVGDERQRFVVPTSFLSHPLFRMLLDKAYREFGFEQRNALVVPCSV 119
           P  P   P G+ A+YVG E +RF++PTS+LSH LF++LL+KA  EFGF+Q  AL +PC V
Sbjct: 73  PEPPHDVPKGNLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDQSGALTIPCEV 132

[Close]

BLAST of Clc04G10550 vs. TAIR 10
Match: AT5G20810.2 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 89.0 bits (219), Expect = 3.2e-18
Identity = 48/131 (36.64%), Postives = 78/131 (59.54%), Query Frame = 0


Query: 4   KKMVSFKKLAKKVK-VRVGTESE---------------PSHNECLLTDRLELTEDHDSQS 63
           +++V  K++ +K + V +G +SE               P+ N+ LL  +   +++   QS
Sbjct: 13  RQIVRLKEILQKWQTVTIGPKSEVPPLAAGKQAVAMISPAINKRLLDVKNGDSDEETCQS 72

Query: 64  PSSPTSTPTGSFAIYVGDERQRFVVPTSFLSHPLFRMLLDKAYREFGFEQRNALVVPCSV 119
           P  P   P G+ A+YVG E +RF++PTS+LSH LF++LL+KA  EFGF+Q  AL +PC V
Sbjct: 73  PEPPHDVPKGNLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDQSGALTIPCEV 132

[Close]

BLAST of Clc04G10550 vs. TAIR 10
Match: AT3G43120.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-16
Identity = 47/131 (35.88%), Postives = 75/131 (57.25%), Query Frame = 0


Query: 4   KKMVSFKKLAKKVK-VRVGTESE--------------PSHNECLL-TDRLELTEDHDSQS 63
           K++V  K++ +K + V +G++S+              P  N+ LL     +  E+   QS
Sbjct: 13  KQIVRLKEILQKWQTVTIGSKSDDGELGARKHTAIISPVINKRLLDLKTCDSDEETTCQS 72

Query: 64  PSSPTSTPTGSFAIYVGDERQRFVVPTSFLSHPLFRMLLDKAYREFGFEQRNALVVPCSV 119
           P  P   P G  A+YVG E +RF++PT+FLSH LF++LL+KA  E+GF+   AL +PC V
Sbjct: 73  PEPPPDVPKGYLAVYVGPELRRFIIPTNFLSHSLFKVLLEKAEEEYGFDHSGALTIPCEV 132

[Close]

BLAST of Clc04G10550 vs. TAIR 10
Match: AT5G66260.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-13
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 55  PTGSFAIYVGDERQRFVVPTSFLSHPLFRMLLDKAYREFGFEQRNALVVPCSVSAFQEIV 114
           P G F +YVG  R R V+P SFL+HP+F+MLL ++  EFGF Q N L +PC    F+ ++
Sbjct: 35  PKGHFVVYVGHSRSRHVIPISFLTHPIFQMLLQQSEEEFGFFQDNGLTIPCDEHFFRALI 94

Query: 115 SAV 118
           S++
Sbjct: 95  SSI 97

The following BLAST results are available for this feature:

BLAST of Clc04G10550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883394.1	1.3e-66	97.76	auxin-responsive protein SAUR50 [Benincasa hispida]	[more]
XP_008462582.1	5.2e-63	94.07	PREDICTED: auxin-induced protein X15 [Cucumis melo]	[more]
KAA0025249.1	2.0e-62	94.07	auxin-induced protein X15 [Cucumis melo var. makuwa] >TYK07418.1 auxin-induced p...	[more]
XP_031742714.1	9.9e-62	92.59	auxin-induced protein 6B [Cucumis sativus]	[more]
XP_022962864.1	2.9e-61	92.65	auxin-induced protein 6B-like [Cucurbita moschata]	[more]

BLAST of Clc04G10550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65695	4.4e-12	44.78	Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 S...	[more]
Q9LTV3	4.8e-11	40.28	Auxin-responsive protein SAUR72 OS=Arabidopsis thaliana OX=3702 GN=SAUR72 PE=1 S...	[more]
P0DKL1	1.6e-09	38.81	Auxin-responsive protein SAUR50 OS=Helianthus annuus OX=4232 PE=3 SV=1	[more]
P32295	2.0e-09	40.54	Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata OX=3916 ...	[more]
O64538	2.0e-09	36.36	Auxin-responsive protein SAUR40 OS=Arabidopsis thaliana OX=3702 GN=SAUR40 PE=2 S...	[more]

BLAST of Clc04G10550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CHA6	2.5e-63	94.07	auxin-induced protein X15 OS=Cucumis melo OX=3656 GN=LOC103500907 PE=3 SV=1	[more]
A0A5A7SIW6	9.6e-63	94.07	Auxin-induced protein X15 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0KEY4	4.8e-62	92.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G452710 PE=3 SV=1	[more]
A0A6J1HIA1	1.4e-61	92.65	auxin-induced protein 6B-like OS=Cucurbita moschata OX=3662 GN=LOC111463231 PE=3...	[more]
A0A6J1IC38	3.1e-61	92.54	auxin-responsive protein SAUR50-like OS=Cucurbita maxima OX=3661 GN=LOC111471159...	[more]

BLAST of Clc04G10550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36210.1	2.4e-34	55.63	SAUR-like auxin-responsive protein family	[more]
AT5G20810.1	3.2e-18	36.64	SAUR-like auxin-responsive protein family	[more]
AT5G20810.2	3.2e-18	36.64	SAUR-like auxin-responsive protein family	[more]
AT3G43120.1	1.3e-16	35.88	SAUR-like auxin-responsive protein family	[more]
AT5G66260.1	1.1e-13	47.62	SAUR-like auxin-responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 41..116 e-value: 1.1E-24 score: 86.4
None	No IPR available	PANTHER	PTHR31374	AUXIN-INDUCED PROTEIN-LIKE-RELATED	coord: 1..134
None	No IPR available	PANTHER	PTHR31374:SF28	SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY	coord: 1..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G10550.1	Clc04G10550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin