Clc04G10470 (gene) Watermelon (cordophanus) v2

Overview
NameClc04G10470
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptionprotein BIC1-like
LocationClcChr04: 24031925 .. 24032382 (+)
RNA-Seq ExpressionClc04G10470
SyntenyClc04G10470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAAAATACACCATGACTCTCCCTCTCAAACCCAACTCCCCATTATTCCTTCCCCATCCTCTCCAAGAATCAGATCAAAGTCGTCCTAAAGATGATCAAACGCAGCTCGATACTTCCTCCCCTCTCGTGTTGGAGGAGAATGGTCGGGAACGGTTGAAGCGCCACCGTGTGGCCGTGGCAGGGCAGGTTTGGATCCCGGAGAAGTGGGGAAAGGAGGAGTTTCTGAAGGATTGGATCGACGGCTCGGCATTCGAAGCCTCTTTGTTCCCCTCCGGGGTTGTCTCGGCTCGCCGGGCTTTGGCTCGAGATGCTAAGAGATTGTCGCCGAATAACAACACTGCCACCGCCGCCGGTGCCGGTGCCGGAGCTTTGAGAATATTTAACAGTTGTTAAACATATATATATATATATATATATATATATATATATATATATATATATATATATATATAT

mRNA sequence

AAAAAAAAAAATACACCATGACTCTCCCTCTCAAACCCAACTCCCCATTATTCCTTCCCCATCCTCTCCAAGAATCAGATCAAAGTCGTCCTAAAGATGATCAAACGCAGCTCGATACTTCCTCCCCTCTCGTGTTGGAGGAGAATGGTCGGGAACGGTTGAAGCGCCACCGTGTGGCCGTGGCAGGGCAGGTTTGGATCCCGGAGAAGTGGGGAAAGGAGGAGTTTCTGAAGGATTGGATCGACGGCTCGGCATTCGAAGCCTCTTTGTTCCCCTCCGGGGTTGTCTCGGCTCGCCGGGCTTTGGCTCGAGATGCTAAGAGATTGTCGCCGAATAACAACACTGCCACCGCCGCCGGTGCCGGTGCCGGAGCTTTGAGAATATTTAACAGTTGTTAAACATATATATATATATATATATATATATATATATATATATATATATATATATATATATAT

Coding sequence (CDS)

ATGACTCTCCCTCTCAAACCCAACTCCCCATTATTCCTTCCCCATCCTCTCCAAGAATCAGATCAAAGTCGTCCTAAAGATGATCAAACGCAGCTCGATACTTCCTCCCCTCTCGTGTTGGAGGAGAATGGTCGGGAACGGTTGAAGCGCCACCGTGTGGCCGTGGCAGGGCAGGTTTGGATCCCGGAGAAGTGGGGAAAGGAGGAGTTTCTGAAGGATTGGATCGACGGCTCGGCATTCGAAGCCTCTTTGTTCCCCTCCGGGGTTGTCTCGGCTCGCCGGGCTTTGGCTCGAGATGCTAAGAGATTGTCGCCGAATAACAACACTGCCACCGCCGCCGGTGCCGGTGCCGGAGCTTTGAGAATATTTAACAGTTGTTAA

Protein sequence

MTLPLKPNSPLFLPHPLQESDQSRPKDDQTQLDTSSPLVLEENGRERLKRHRVAVAGQVWIPEKWGKEEFLKDWIDGSAFEASLFPSGVVSARRALARDAKRLSPNNNTATAAGAGAGALRIFNSC
Homology
BLAST of Clc04G10470 vs. NCBI nr
Match: XP_038882952.1 (protein BIC2-like [Benincasa hispida])

HSP 1 Score: 208.0 bits (528), Expect = 4.8e-50
Identity = 111/129 (86.05%), Postives = 116/129 (89.92%), Query Frame = 0

Query: 1   MTLPL-KPNSPLFLPHPLQESDQSRPKDDQTQLD-TSSPLVLEENGRERLKRHRVAVAGQ 60
           MTLP  KPNSPLFL HPLQESDQSRP+D QT+LD TSS L  EE+GRERLKRHRVAVAGQ
Sbjct: 1   MTLPSPKPNSPLFLHHPLQESDQSRPQDHQTKLDTTSSALAPEESGRERLKRHRVAVAGQ 60

Query: 61  VWIPEKWGKEEFLKDWIDGSAFEASLFPSGVVSARRALARDAKRLSPNNN-TATAAGAGA 120
           VWIP+KWGKEEFLKDWIDGSAFEASLFPSG+VSARRALARDAKRLSPNNN  AT A AGA
Sbjct: 61  VWIPDKWGKEEFLKDWIDGSAFEASLFPSGIVSARRALARDAKRLSPNNNAAATTAAAGA 120

Query: 121 GALRIFNSC 127
           GALRI NSC
Sbjct: 121 GALRILNSC 129

BLAST of Clc04G10470 vs. NCBI nr
Match: XP_023518112.1 (protein BIC1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 163.7 bits (413), Expect = 1.0e-36
Identity = 95/126 (75.40%), Postives = 101/126 (80.16%), Query Frame = 0

Query: 1   MTLPLKPNSPLFLPHPLQESDQSRPKDDQTQLDTSSPLVLEENGRERLKRHRVAVAGQVW 60
           +T PLKP SPL LP   QESDQ   K D  +L     L  EENG ERLKRHRVAVAGQVW
Sbjct: 4   LTSPLKPTSPL-LPDN-QESDQ---KSDDQKL-----LAAEENGLERLKRHRVAVAGQVW 63

Query: 61  IPEKWGKEEFLKDWIDGSAFEASLFPSGVVSARRALARDAKRLSPNNNTATAAGAGAGAL 120
           IPEKWGKEE LKDWIDGSAFEASLFPSG+VSARRALAR+AKR SPNNN+ATA+ A AGAL
Sbjct: 64  IPEKWGKEELLKDWIDGSAFEASLFPSGIVSARRALAREAKRSSPNNNSATAS-AAAGAL 118

Query: 121 RIFNSC 127
           RI NSC
Sbjct: 124 RILNSC 118

BLAST of Clc04G10470 vs. NCBI nr
Match: XP_022972606.1 (protein BIC1-like [Cucurbita maxima])

HSP 1 Score: 161.8 bits (408), Expect = 3.9e-36
Identity = 94/126 (74.60%), Postives = 100/126 (79.37%), Query Frame = 0

Query: 1   MTLPLKPNSPLFLPHPLQESDQSRPKDDQTQLDTSSPLVLEENGRERLKRHRVAVAGQVW 60
           +T PLKP SPL LP   QESDQ   K D  +L     L  EENG ERLKRHRVAVAGQVW
Sbjct: 4   LTSPLKPTSPL-LPDN-QESDQ---KSDDQKL-----LAAEENGLERLKRHRVAVAGQVW 63

Query: 61  IPEKWGKEEFLKDWIDGSAFEASLFPSGVVSARRALARDAKRLSPNNNTATAAGAGAGAL 120
           IPEKWGKEE LKDWIDGSAFEASLFPSG+V ARRALAR+AKR SPNNN+ATA+ A AGAL
Sbjct: 64  IPEKWGKEELLKDWIDGSAFEASLFPSGIVPARRALAREAKRSSPNNNSATAS-AAAGAL 118

Query: 121 RIFNSC 127
           RI NSC
Sbjct: 124 RILNSC 118

BLAST of Clc04G10470 vs. NCBI nr
Match: KAA0025256.1 (protein BIC1 isoform X1 [Cucumis melo var. makuwa] >TYK07411.1 protein BIC1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 6.7e-36
Identity = 94/131 (71.76%), Postives = 101/131 (77.10%), Query Frame = 0

Query: 1   MTLPL-KPNSPLFLPH----PLQESDQSRPKDDQTQLDTSSPLVLEENGRERLKRHRVAV 60
           MTLP   PNS LFLPH     LQESDQ+      ++ D    L   E+ RERLKRHR+AV
Sbjct: 1   MTLPSPNPNSSLFLPHHDHPHLQESDQT-----LSEHDPQKGLEEGESSRERLKRHRMAV 60

Query: 61  AGQVWIPEKWGKEEFLKDWIDGSAFEASLFPSGVVSARRALARDAKRLSPNNNTATA-AG 120
           AG VWIP+KWGKEEFLKDWIDGSAFEASLFPSG+VSAR ALARDAKRLSPNNNTATA A 
Sbjct: 61  AGHVWIPDKWGKEEFLKDWIDGSAFEASLFPSGIVSARCALARDAKRLSPNNNTATATAT 120

Query: 121 AGAGALRIFNS 126
           A AGALRI NS
Sbjct: 121 AAAGALRILNS 126

BLAST of Clc04G10470 vs. NCBI nr
Match: KAG7027199.1 (Protein BIC1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161.0 bits (406), Expect = 6.7e-36
Identity = 94/123 (76.42%), Postives = 99/123 (80.49%), Query Frame = 0

Query: 4   PLKPNSPLFLPHPLQESDQSRPKDDQTQLDTSSPLVLEENGRERLKRHRVAVAGQVWIPE 63
           PLKP SPL LP   QESDQ   K D  +L     L  EENG ERLKRHRVAVAGQVWIPE
Sbjct: 7   PLKPTSPL-LPDN-QESDQ---KSDDQKL-----LAPEENGLERLKRHRVAVAGQVWIPE 66

Query: 64  KWGKEEFLKDWIDGSAFEASLFPSGVVSARRALARDAKRLSPNNNTATAAGAGAGALRIF 123
           KWGKEE LKDWIDGSAFEASLFPSG+VSARRALAR+AKR SPNNN+ATA+ A AGALRI 
Sbjct: 67  KWGKEELLKDWIDGSAFEASLFPSGIVSARRALAREAKRSSPNNNSATAS-AAAGALRIL 118

Query: 124 NSC 127
           NSC
Sbjct: 127 NSC 118

BLAST of Clc04G10470 vs. ExPASy Swiss-Prot
Match: Q9LXJ1 (Protein BIC1 OS=Arabidopsis thaliana OX=3702 GN=BIC1 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.0e-15
Identity = 44/87 (50.57%), Postives = 55/87 (63.22%), Query Frame = 0

Query: 20  SDQSRPKDDQTQLDTSSPLVLEEN----GRERLKRHRVAVAGQVWIPEKWGKEEFLKDWI 79
           S  S  K D   L+       EE+    GRERLK+HR  +AG+VWIPE WG+EE LKDWI
Sbjct: 38  SSVSADKKDLALLEEKPKQSQEEDRVDTGRERLKKHRREIAGRVWIPEIWGQEELLKDWI 97

Query: 80  DGSAFEASLFPSGVVSARRALARDAKR 103
           D S F+  L P+G+ SAR AL  +A+R
Sbjct: 98  DCSTFDTCLVPAGISSARTALVEEARR 124

BLAST of Clc04G10470 vs. ExPASy Swiss-Prot
Match: Q9M280 (Protein BIC2 OS=Arabidopsis thaliana OX=3702 GN=BIC2 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.4e-12
Identity = 47/119 (39.50%), Postives = 63/119 (52.94%), Query Frame = 0

Query: 8   NSPLFLPHPLQESDQSRPKDDQTQLDTSSPLVLEENGRERLKRHRVAVAGQVWIPEKWGK 67
           N P     P+      R K ++T   T  P     +GR+RLKRHR  VAG+V IP+ WGK
Sbjct: 5   NLPEETKEPISPGSSHR-KQNKTGTKTCFPETTVLSGRDRLKRHREEVAGKVPIPDSWGK 64

Query: 68  EEFLKDWIDGSAFEASLFPSGVVSARRALARDAKRLSPNNNTATAAGAGAGALRIFNSC 127
           E  L  W+D S F+A+   S +VSAR AL  D      + + A A G+    LR+ +SC
Sbjct: 65  EGLLMGWMDFSTFDAAFTSSQIVSARAALMAD------SGDDAGARGSRPQRLRVESSC 116

BLAST of Clc04G10470 vs. ExPASy TrEMBL
Match: A0A6J1I6F1 (protein BIC1-like OS=Cucurbita maxima OX=3661 GN=LOC111471143 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.9e-36
Identity = 94/126 (74.60%), Postives = 100/126 (79.37%), Query Frame = 0

Query: 1   MTLPLKPNSPLFLPHPLQESDQSRPKDDQTQLDTSSPLVLEENGRERLKRHRVAVAGQVW 60
           +T PLKP SPL LP   QESDQ   K D  +L     L  EENG ERLKRHRVAVAGQVW
Sbjct: 4   LTSPLKPTSPL-LPDN-QESDQ---KSDDQKL-----LAAEENGLERLKRHRVAVAGQVW 63

Query: 61  IPEKWGKEEFLKDWIDGSAFEASLFPSGVVSARRALARDAKRLSPNNNTATAAGAGAGAL 120
           IPEKWGKEE LKDWIDGSAFEASLFPSG+V ARRALAR+AKR SPNNN+ATA+ A AGAL
Sbjct: 64  IPEKWGKEELLKDWIDGSAFEASLFPSGIVPARRALAREAKRSSPNNNSATAS-AAAGAL 118

Query: 121 RIFNSC 127
           RI NSC
Sbjct: 124 RILNSC 118

BLAST of Clc04G10470 vs. ExPASy TrEMBL
Match: A0A5D3C697 (Protein BIC1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G001370 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 3.2e-36
Identity = 94/131 (71.76%), Postives = 101/131 (77.10%), Query Frame = 0

Query: 1   MTLPL-KPNSPLFLPH----PLQESDQSRPKDDQTQLDTSSPLVLEENGRERLKRHRVAV 60
           MTLP   PNS LFLPH     LQESDQ+      ++ D    L   E+ RERLKRHR+AV
Sbjct: 1   MTLPSPNPNSSLFLPHHDHPHLQESDQT-----LSEHDPQKGLEEGESSRERLKRHRMAV 60

Query: 61  AGQVWIPEKWGKEEFLKDWIDGSAFEASLFPSGVVSARRALARDAKRLSPNNNTATA-AG 120
           AG VWIP+KWGKEEFLKDWIDGSAFEASLFPSG+VSAR ALARDAKRLSPNNNTATA A 
Sbjct: 61  AGHVWIPDKWGKEEFLKDWIDGSAFEASLFPSGIVSARCALARDAKRLSPNNNTATATAT 120

Query: 121 AGAGALRIFNS 126
           A AGALRI NS
Sbjct: 121 AAAGALRILNS 126

BLAST of Clc04G10470 vs. ExPASy TrEMBL
Match: A0A0A0KFC4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G452640 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 7.2e-36
Identity = 95/132 (71.97%), Postives = 102/132 (77.27%), Query Frame = 0

Query: 1   MTLPL-KPNSPLFLPH--PLQESDQSRPKDDQTQLDTSSPLVLE-ENGRERLKRHRVAVA 60
           MTLP   PNS LFLPH   LQESDQ+      ++ D   PL  E E+ RERLKRHR+AVA
Sbjct: 1   MTLPSPNPNSSLFLPHHPHLQESDQT-----LSEHDPQKPLEEEDESSRERLKRHRMAVA 60

Query: 61  GQVWIPEKWGKEEFLKDWIDGSAFEASLFPSGVVSARRALARDAKRLSPNNNTATAAG-- 120
           G VWIP+KWGKEEFLKDWIDGSAFEASLF SG+VSAR ALARDAKRLSPNNNTATAA   
Sbjct: 61  GHVWIPDKWGKEEFLKDWIDGSAFEASLFHSGIVSARCALARDAKRLSPNNNTATAAATA 120

Query: 121 -AGAGALRIFNS 126
            A AGALRI NS
Sbjct: 121 TAAAGALRILNS 127

BLAST of Clc04G10470 vs. ExPASy TrEMBL
Match: A0A6J1HFE1 (protein BIC1-like OS=Cucurbita moschata OX=3662 GN=LOC111463067 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.1e-35
Identity = 93/123 (75.61%), Postives = 98/123 (79.67%), Query Frame = 0

Query: 4   PLKPNSPLFLPHPLQESDQSRPKDDQTQLDTSSPLVLEENGRERLKRHRVAVAGQVWIPE 63
           PLKP SPL LP   QESDQ   K D  +L     L  EENG ERLKRHRVAVAGQVWIPE
Sbjct: 7   PLKPTSPL-LPDN-QESDQ---KSDDQKL-----LAPEENGLERLKRHRVAVAGQVWIPE 66

Query: 64  KWGKEEFLKDWIDGSAFEASLFPSGVVSARRALARDAKRLSPNNNTATAAGAGAGALRIF 123
           KWGKEE LKDWIDGSAFEASLFPSG+VSARRALAR+AKR SPNNN+A AA A AG+LRI 
Sbjct: 67  KWGKEELLKDWIDGSAFEASLFPSGIVSARRALAREAKRSSPNNNSA-AASATAGSLRIL 118

Query: 124 NSC 127
           NSC
Sbjct: 127 NSC 118

BLAST of Clc04G10470 vs. ExPASy TrEMBL
Match: A0A1R3II58 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_12028 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 3.1e-18
Identity = 54/92 (58.70%), Postives = 68/92 (73.91%), Query Frame = 0

Query: 16  PLQESDQSRPKDDQTQL-----DTSSPLVLEENGRERLKRHRVAVAGQVWIPEKWGKEEF 75
           PLQ S  S  K ++ +      +TSS +V EENGRERLKRHR+ VAG+VWIPE WG+EE 
Sbjct: 72  PLQCSSASGLKVEEGEAMRDENETSSEIV-EENGRERLKRHRIEVAGRVWIPEIWGQEEL 131

Query: 76  LKDWIDGSAFEASLFPSGVVSARRALARDAKR 103
           LKDWID SAF+ASL P+G++SAR AL  + +R
Sbjct: 132 LKDWIDCSAFDASLVPNGIMSARAALVEEGRR 162

BLAST of Clc04G10470 vs. TAIR 10
Match: AT3G52740.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44450.1); Has 65 Blast hits to 65 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 84.3 bits (207), Expect = 7.4e-17
Identity = 44/87 (50.57%), Postives = 55/87 (63.22%), Query Frame = 0

Query: 20  SDQSRPKDDQTQLDTSSPLVLEEN----GRERLKRHRVAVAGQVWIPEKWGKEEFLKDWI 79
           S  S  K D   L+       EE+    GRERLK+HR  +AG+VWIPE WG+EE LKDWI
Sbjct: 38  SSVSADKKDLALLEEKPKQSQEEDRVDTGRERLKKHRREIAGRVWIPEIWGQEELLKDWI 97

Query: 80  DGSAFEASLFPSGVVSARRALARDAKR 103
           D S F+  L P+G+ SAR AL  +A+R
Sbjct: 98  DCSTFDTCLVPAGISSARTALVEEARR 124

BLAST of Clc04G10470 vs. TAIR 10
Match: AT3G44450.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52740.1); Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.0 bits (175), Expect = 3.8e-13
Identity = 47/119 (39.50%), Postives = 63/119 (52.94%), Query Frame = 0

Query: 8   NSPLFLPHPLQESDQSRPKDDQTQLDTSSPLVLEENGRERLKRHRVAVAGQVWIPEKWGK 67
           N P     P+      R K ++T   T  P     +GR+RLKRHR  VAG+V IP+ WGK
Sbjct: 5   NLPEETKEPISPGSSHR-KQNKTGTKTCFPETTVLSGRDRLKRHREEVAGKVPIPDSWGK 64

Query: 68  EEFLKDWIDGSAFEASLFPSGVVSARRALARDAKRLSPNNNTATAAGAGAGALRIFNSC 127
           E  L  W+D S F+A+   S +VSAR AL  D      + + A A G+    LR+ +SC
Sbjct: 65  EGLLMGWMDFSTFDAAFTSSQIVSARAALMAD------SGDDAGARGSRPQRLRVESSC 116

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038882952.14.8e-5086.05protein BIC2-like [Benincasa hispida][more]
XP_023518112.11.0e-3675.40protein BIC1-like [Cucurbita pepo subsp. pepo][more]
XP_022972606.13.9e-3674.60protein BIC1-like [Cucurbita maxima][more]
KAA0025256.16.7e-3671.76protein BIC1 isoform X1 [Cucumis melo var. makuwa] >TYK07411.1 protein BIC1 isof... [more]
KAG7027199.16.7e-3676.42Protein BIC1, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
Q9LXJ11.0e-1550.57Protein BIC1 OS=Arabidopsis thaliana OX=3702 GN=BIC1 PE=1 SV=1[more]
Q9M2805.4e-1239.50Protein BIC2 OS=Arabidopsis thaliana OX=3702 GN=BIC2 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1I6F11.9e-3674.60protein BIC1-like OS=Cucurbita maxima OX=3661 GN=LOC111471143 PE=4 SV=1[more]
A0A5D3C6973.2e-3671.76Protein BIC1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KFC47.2e-3671.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G452640 PE=4 SV=1[more]
A0A6J1HFE12.1e-3575.61protein BIC1-like OS=Cucurbita moschata OX=3662 GN=LOC111463067 PE=4 SV=1[more]
A0A1R3II583.1e-1858.70Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_12028 PE=4 ... [more]
Match NameE-valueIdentityDescription
AT3G52740.17.4e-1750.57unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G44450.13.8e-1339.50unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..41
NoneNo IPR availablePANTHERPTHR34207:SF2PROTEIN BIC1coord: 20..125
IPR040374Protein BICPANTHERPTHR34207PROTEIN BIC1coord: 20..125

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc04G10470.1Clc04G10470.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009785 blue light signaling pathway