Clc04G10470 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAAAAAAAATACACCATGACTCTCCCTCTCAAACCCAACTCCCCATTATTCCTTCCCCATCCTCTCCAAGAATCAGATCAAAGTCGTCCTAAAGATGATCAAACGCAGCTCGATACTTCCTCCCCTCTCGTGTTGGAGGAGAATGGTCGGGAACGGTTGAAGCGCCACCGTGTGGCCGTGGCAGGGCAGGTTTGGATCCCGGAGAAGTGGGGAAAGGAGGAGTTTCTGAAGGATTGGATCGACGGCTCGGCATTCGAAGCCTCTTTGTTCCCCTCCGGGGTTGTCTCGGCTCGCCGGGCTTTGGCTCGAGATGCTAAGAGATTGTCGCCGAATAACAACACTGCCACCGCCGCCGGTGCCGGTGCCGGAGCTTTGAGAATATTTAACAGTTGTTAAACATATATATATATATATATATATATATATATATATATATATATATATATATATATATAT AAAAAAAAAAATACACCATGACTCTCCCTCTCAAACCCAACTCCCCATTATTCCTTCCCCATCCTCTCCAAGAATCAGATCAAAGTCGTCCTAAAGATGATCAAACGCAGCTCGATACTTCCTCCCCTCTCGTGTTGGAGGAGAATGGTCGGGAACGGTTGAAGCGCCACCGTGTGGCCGTGGCAGGGCAGGTTTGGATCCCGGAGAAGTGGGGAAAGGAGGAGTTTCTGAAGGATTGGATCGACGGCTCGGCATTCGAAGCCTCTTTGTTCCCCTCCGGGGTTGTCTCGGCTCGCCGGGCTTTGGCTCGAGATGCTAAGAGATTGTCGCCGAATAACAACACTGCCACCGCCGCCGGTGCCGGTGCCGGAGCTTTGAGAATATTTAACAGTTGTTAAACATATATATATATATATATATATATATATATATATATATATATATATATATATATATAT ATGACTCTCCCTCTCAAACCCAACTCCCCATTATTCCTTCCCCATCCTCTCCAAGAATCAGATCAAAGTCGTCCTAAAGATGATCAAACGCAGCTCGATACTTCCTCCCCTCTCGTGTTGGAGGAGAATGGTCGGGAACGGTTGAAGCGCCACCGTGTGGCCGTGGCAGGGCAGGTTTGGATCCCGGAGAAGTGGGGAAAGGAGGAGTTTCTGAAGGATTGGATCGACGGCTCGGCATTCGAAGCCTCTTTGTTCCCCTCCGGGGTTGTCTCGGCTCGCCGGGCTTTGGCTCGAGATGCTAAGAGATTGTCGCCGAATAACAACACTGCCACCGCCGCCGGTGCCGGTGCCGGAGCTTTGAGAATATTTAACAGTTGTTAA MTLPLKPNSPLFLPHPLQESDQSRPKDDQTQLDTSSPLVLEENGRERLKRHRVAVAGQVWIPEKWGKEEFLKDWIDGSAFEASLFPSGVVSARRALARDAKRLSPNNNTATAAGAGAGALRIFNSC Homology
BLAST of Clc04G10470 vs. NCBI nr
Match: XP_038882952.1 (protein BIC2-like [Benincasa hispida]) HSP 1 Score: 208.0 bits (528), Expect = 4.8e-50 Identity = 111/129 (86.05%), Postives = 116/129 (89.92%), Query Frame = 0
BLAST of Clc04G10470 vs. NCBI nr
Match: XP_023518112.1 (protein BIC1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 163.7 bits (413), Expect = 1.0e-36 Identity = 95/126 (75.40%), Postives = 101/126 (80.16%), Query Frame = 0
BLAST of Clc04G10470 vs. NCBI nr
Match: XP_022972606.1 (protein BIC1-like [Cucurbita maxima]) HSP 1 Score: 161.8 bits (408), Expect = 3.9e-36 Identity = 94/126 (74.60%), Postives = 100/126 (79.37%), Query Frame = 0
BLAST of Clc04G10470 vs. NCBI nr
Match: KAA0025256.1 (protein BIC1 isoform X1 [Cucumis melo var. makuwa] >TYK07411.1 protein BIC1 isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 161.0 bits (406), Expect = 6.7e-36 Identity = 94/131 (71.76%), Postives = 101/131 (77.10%), Query Frame = 0
BLAST of Clc04G10470 vs. NCBI nr
Match: KAG7027199.1 (Protein BIC1, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 161.0 bits (406), Expect = 6.7e-36 Identity = 94/123 (76.42%), Postives = 99/123 (80.49%), Query Frame = 0
BLAST of Clc04G10470 vs. ExPASy Swiss-Prot
Match: Q9LXJ1 (Protein BIC1 OS=Arabidopsis thaliana OX=3702 GN=BIC1 PE=1 SV=1) HSP 1 Score: 84.3 bits (207), Expect = 1.0e-15 Identity = 44/87 (50.57%), Postives = 55/87 (63.22%), Query Frame = 0
BLAST of Clc04G10470 vs. ExPASy Swiss-Prot
Match: Q9M280 (Protein BIC2 OS=Arabidopsis thaliana OX=3702 GN=BIC2 PE=1 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 5.4e-12 Identity = 47/119 (39.50%), Postives = 63/119 (52.94%), Query Frame = 0
BLAST of Clc04G10470 vs. ExPASy TrEMBL
Match: A0A6J1I6F1 (protein BIC1-like OS=Cucurbita maxima OX=3661 GN=LOC111471143 PE=4 SV=1) HSP 1 Score: 161.8 bits (408), Expect = 1.9e-36 Identity = 94/126 (74.60%), Postives = 100/126 (79.37%), Query Frame = 0
BLAST of Clc04G10470 vs. ExPASy TrEMBL
Match: A0A5D3C697 (Protein BIC1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G001370 PE=4 SV=1) HSP 1 Score: 161.0 bits (406), Expect = 3.2e-36 Identity = 94/131 (71.76%), Postives = 101/131 (77.10%), Query Frame = 0
BLAST of Clc04G10470 vs. ExPASy TrEMBL
Match: A0A0A0KFC4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G452640 PE=4 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 7.2e-36 Identity = 95/132 (71.97%), Postives = 102/132 (77.27%), Query Frame = 0
BLAST of Clc04G10470 vs. ExPASy TrEMBL
Match: A0A6J1HFE1 (protein BIC1-like OS=Cucurbita moschata OX=3662 GN=LOC111463067 PE=4 SV=1) HSP 1 Score: 158.3 bits (399), Expect = 2.1e-35 Identity = 93/123 (75.61%), Postives = 98/123 (79.67%), Query Frame = 0
BLAST of Clc04G10470 vs. ExPASy TrEMBL
Match: A0A1R3II58 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_12028 PE=4 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 3.1e-18 Identity = 54/92 (58.70%), Postives = 68/92 (73.91%), Query Frame = 0
BLAST of Clc04G10470 vs. TAIR 10
Match: AT3G52740.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44450.1); Has 65 Blast hits to 65 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 84.3 bits (207), Expect = 7.4e-17 Identity = 44/87 (50.57%), Postives = 55/87 (63.22%), Query Frame = 0
BLAST of Clc04G10470 vs. TAIR 10
Match: AT3G44450.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52740.1); Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 72.0 bits (175), Expect = 3.8e-13 Identity = 47/119 (39.50%), Postives = 63/119 (52.94%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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