Clc04G10260 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G10260
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	RAB6-interacting golgin
Location	ClcChr04: 23843843 .. 23847309 (-)
RNA-Seq Expression	Clc04G10260
Synteny	Clc04G10260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTCTCCCTTTTTTGGCCAAAAAGTCCGTGTCCCGTGCTAATTCAATCCAAGGGTCAGAAATTGAAGATGTGGAAACAGCCGATTGTAAAAGCAAAAGGAACGAAAGGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAAGCGGCAGCGGCAGCAGCCTACCAAAGGAGGAAAGCAAAAGAAAGGAAACAGCCCATTCATTCATAGAAGCAGAATCGAAAGGGCGGTGGTTTCAAGAAACTCAACATCAAGACGAGAGAAAGATGCAGAACGATCAGAATCCACACCAACTTCAACTAATGTTAGACAATTCTGCAAGTTTGAGTTTCAGTAGCAAAGAAGACGATGACATGTCCAAATCGGCGCTTTCGGCTTTCAGGGAAAAGGAAGAGGAAATCGACCGGATGAGGACTGAACTTCACAACAAACTTCAAGCTCGCCTCGGCCGAGTCCAGGAAGAATCCAGGCGTTTGGCTTCAATTCGAGAGGTCCTTCATCTCCTTCCTCCCTAACTAAACCCTATTTCCTAAGCTGCAATCAATTTCTGTTGAAATTCTGTTTCTGTGACAAACTGTTCTTCGAAACCTACAAGTTTTGATATGATTCATTGATGAACAGGAACTTGAAGCCATAGCGGGGGATCCAATGAGGAAGGAAATTGGACAAATTCGTAAGAAAATTGATGCCCTAAACAAGGAATTAAAGCCTCTTGGACTAACATGCCAAAAGAAGGTTTTTTTTTTTTTTTTTTTTTCTTGTTTCTAATTTTTCTTTTAAAACAGTTCTAAATTTATTTTTAATGACTCCGATGGGATCGCTTTTATATATAATTTGAAAATTATCAGAAGATTTGTAAAGAATGTTATTCTGAACTTTGAAGAAATCTAGTTTCTTTTTTCCTTAGTAATACCTTTTTGGCAAGAAATCTAAAAACCTCAGTCATCTCCAAAAAGGAAAATAACTAAGCAGAAGTTGAAAATTAATTTTAAATTCAAGATTGGCTTAGTGGATAAACGAGTGTTCATCCTTCCACTCCACAATTAGTTGAGAAAAAAAATATTTAAAATATTTGAGTTATTTTTTAATATAAAAAAATAAATTAAAATATTTAAAAAATAACAAAATTTCACATCGATTATAATATTTTGTTATTATTTATAAATATTTCGTGTATTTTTGTCAAAATTTACTTTTATCAAATTTTAAAAAAATTGAGAATTATTTTGAAAAGAATTCAATAAAAACTATTGTTTGGGCGGGGAAAAGTTCTTATATAGTGGGTCTTAATTTATTCACTTTCTAAAATAATTTTAAATTGTAATTAAATTTTACGGTTTTCTTTTTTTTTGAACCCTTGTATAATTTTTTTTAAAAAGTTGGCTAAAAATTTTTTTTTAAAAAAAAAAAGGAAAAAAAAAAAAGAAGTTATGTAAGAAGGCAGTAGATTTTTACAATAGTATGTTTTTGTACTGAAAAATGGTTCAAATTGTTTTGGTGTGACAGGAGAAAGAGTACAAAGATGCCCTTGATGTTTTTAATGAAAAGAACAACGAAAAAGTACAGTTAATATCAAAACTAATGGAGGTTAGTTTCGTAAATTTGCTACTCTTCCTCCCCCCCTTTTTTTTTTCCAAATTATTGTTTTTTTCTTAAATTAAGATTTTGTGTTTCTATTTTTAGATGGTTGGTGAAAGTGAAAAGCTGAGGCTAAAGAGGTTGGAAGAATTGAGTAAGCATGTGGATAACACTTCCTAATTTAATTACTAAATTCACTCAATCAGTTCTTATTAATTCCCTTTGGTGATATGTTGTTTTTTTTTTTTTTTTAATTTTCTGTATGAGTGTTTTAAATTTAACCAGTCTCATATGTTTTTATTTCATTTTGGGTTACTATACTTTCACTAAACCTTCTTAATTTAGGGTCACATATATGTATGTATTGCTTTTAACCATACAAATATATCTTGTATCTAAACGTTTCATAATTTCCTACACCTTATTTTCAAGTGATATTGATATAGAAACTAGGGATTATTTCAAGTCTATCCCATTCTCTTTATTTATTTATTTATCTCTTCATAGACGATGTGAGATAAAATCTTGTCAATATCATACTATATTACACTTTCAAATGTGTATTGATTAAATGAGAGGTAGAGATATTTCATCAAATGGTTTTAAAGATATTTGACTTTATAAAAAGCTTAATTCAAAGCCTAGAAACAGTCTTTATTTTAAAAGAAAATAAAAATTATGAACCATCAAGTTCCAAAGTAACTTCATATGGGTGTTATTTTTTTCTTTTTTTTATCTGCTGGAAAAAAGAAGCACTGTAGAAACTTTAGCGCAAAACAGCAAAAGCAATTTTTTTTTTCTTTTAGAAAATTCTTTAAGTGTCACCAAAGGAAAGAAAGACTATATATTAGGAGTCTATTAACTATAGAAATCCATCATTGATTGACTTAGATTATTGATATTTTAGTTTAATCATGAACTTGTATTGTTATTAGAACTATTTTTTAATTGAAGCCTATCAATGTTTATCTTGAATAGATTTGTATTATTGATAAAATTATATATGTATTGAAGTCTCTTTGTAGCTATCACTGAAAGACTTTTATTATTGATAATTTGGACTTGTATTGTTATTAGAACTACAATTGTATTGAAGTTTATCAATGTTTATCATAGACTTATATTGTTGATAGAATTATATATGTATTGAAGTCTACCATAACTAAAACTTCTATTATTTATAGAATTTTATTTGAGAAGTTAATGACTATCACTATAACAACAATAATTAATGGAGAAAAGTTATTCATGATAGGCTTCTTTTAGATTAGAAACCATCCTAGATAGACTAGTTTAAAGCAGAAGGAGAACAAAATAAGAGTATTAGGCGAACTTTGACATGCATTTGCTCTGGCTTATTAAGAAAGATTGAGACTGAAAGACATCTAAGAGAACTCTAAAATAGCTTAATTCTTGCTTGGCTGTAACAGAACAGAAACAGAACTCCCGAAGAAAGCCTTACTTTTGATTCAACCTATCCTCTCCCTTTGGTCGAGTGTACTAGATAACCTTTTCAGTCGAGCTACTTCATTCCTTGTTATTATGAGCGTTAGGTCAATCCCTTCTTGAGCAACCGATTCAATACCAGCTTCTTCGAGAACAGTAAGACGAGTAACTGCTGATTAGTTAGCTGCCAAACAACTCTTCCTCGTCAATTACATTGCCTTCTGTAAGAGCTGGCTAGTCTTCTGTTTATAGGGTAGACTTCTGACTATGATAGTCTATCAATAACAATGGAAAAAAAAAAAGAATTGTCAATGTTAGACTTCATTTAAATAAGGGCATAATGAGAATCGACAGATCTGCAAAATCAAATATAATTTGTTAAAAAAGCATCGCTGTACATTACATTTATTATTATTATTATTAAAGTCTGTTAAAGTTAATC

mRNA sequence

TTTTTCTCCCTTTTTTGGCCAAAAAGTCCGTGTCCCGTGCTAATTCAATCCAAGGGTCAGAAATTGAAGATGTGGAAACAGCCGATTGTAAAAGCAAAAGGAACGAAAGGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAAGCGGCAGCGGCAGCAGCCTACCAAAGGAGGAAAGCAAAAGAAAGGAAACAGCCCATTCATTCATAGAAGCAGAATCGAAAGGGCGGTGGTTTCAAGAAACTCAACATCAAGACGAGAGAAAGATGCAGAACGATCAGAATCCACACCAACTTCAACTAATGTTAGACAATTCTGCAAGTTTGAGTTTCAGTAGCAAAGAAGACGATGACATGTCCAAATCGGCGCTTTCGGCTTTCAGGGAAAAGGAAGAGGAAATCGACCGGATGAGGACTGAACTTCACAACAAACTTCAAGCTCGCCTCGGCCGAGTCCAGGAAGAATCCAGGCGTTTGGCTTCAATTCGAGAGGAACTTGAAGCCATAGCGGGGGATCCAATGAGGAAGGAAATTGGACAAATTCGTAAGAAAATTGATGCCCTAAACAAGGAATTAAAGCCTCTTGGACTAACATGCCAAAAGAAGGAGAAAGAGTACAAAGATGCCCTTGATGTTTTTAATGAAAAGAACAACGAAAAAGTACAGTTAATATCAAAACTAATGGAGATGGTTGGTGAAAGTGAAAAGCTGAGGCTAAAGAGGTTGGAAGAATTGAAACAGAAACAGAACTCCCGAAGAAAGCCTTACTTTTGATTCAACCTATCCTCTCCCTTTGGTCGAGTGTACTAGATAACCTTTTCAGTCGAGCTACTTCATTCCTTGTTATTATGAGCGTTAGGTCAATCCCTTCTTGAGCAACCGATTCAATACCAGCTTCTTCGAGAACAGTAAGACGAGTAACTGCTGATTAGTTAGCTGCCAAACAACTCTTCCTCGTCAATTACATTGCCTTCTGTAAGAGCTGGCTAGTCTTCTGTTTATAGGGTAGACTTCTGACTATGATAGTCTATCAATAACAATGGAAAAAAAAAAAGAATTGTCAATGTTAGACTTCATTTAAATAAGGGCATAATGAGAATCGACAGATCTGCAAAATCAAATATAATTTGTTAAAAAAGCATCGCTGTACATTACATTTATTATTATTATTATTAAAGTCTGTTAAAGTTAATC

Coding sequence (CDS)

ATGTGGAAACAGCCGATTGTAAAAGCAAAAGGAACGAAAGGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAAGCGGCAGCGGCAGCAGCCTACCAAAGGAGGAAAGCAAAAGAAAGGAAACAGCCCATTCATTCATAGAAGCAGAATCGAAAGGGCGGTGGTTTCAAGAAACTCAACATCAAGACGAGAGAAAGATGCAGAACGATCAGAATCCACACCAACTTCAACTAATGTTAGACAATTCTGCAAGTTTGAGTTTCAGTAGCAAAGAAGACGATGACATGTCCAAATCGGCGCTTTCGGCTTTCAGGGAAAAGGAAGAGGAAATCGACCGGATGAGGACTGAACTTCACAACAAACTTCAAGCTCGCCTCGGCCGAGTCCAGGAAGAATCCAGGCGTTTGGCTTCAATTCGAGAGGAACTTGAAGCCATAGCGGGGGATCCAATGAGGAAGGAAATTGGACAAATTCGTAAGAAAATTGATGCCCTAAACAAGGAATTAAAGCCTCTTGGACTAACATGCCAAAAGAAGGAGAAAGAGTACAAAGATGCCCTTGATGTTTTTAATGAAAAGAACAACGAAAAAGTACAGTTAATATCAAAACTAATGGAGATGGTTGGTGAAAGTGAAAAGCTGAGGCTAAAGAGGTTGGAAGAATTGAAACAGAAACAGAACTCCCGAAGAAAGCCTTACTTTTGA

Protein sequence

MWKQPIVKAKGTKGKEKKRKEKKRKSGSGSSLPKEESKRKETAHSFIEAESKGRWFQETQHQDERKMQNDQNPHQLQLMLDNSASLSFSSKEDDDMSKSALSAFREKEEEIDRMRTELHNKLQARLGRVQEESRRLASIREELEAIAGDPMRKEIGQIRKKIDALNKELKPLGLTCQKKEKEYKDALDVFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELKQKQNSRRKPYF

Homology

[Close]

BLAST of Clc04G10260 vs. NCBI nr
Match: XP_038882826.1 (uncharacterized protein LOC120073968 isoform X1 [Benincasa hispida])

HSP 1 Score: 268.1 bits (684), Expect = 7.2e-68
Identity = 146/158 (92.41%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 67  MQNDQNPHQLQLMLDNSASLSFSSKEDDDMSKSALSAFREKEEEIDRMRTELHNKLQARL 126
           MQ+DQNP QLQ MLDNSASLSFSSKEDDDMSKSAL+AFREKEEEIDRMR +LHNKLQ RL
Sbjct: 1   MQSDQNPQQLQAMLDNSASLSFSSKEDDDMSKSALAAFREKEEEIDRMRADLHNKLQVRL 60

Query: 127 GRVQEESRRLASIREELEAIAGDPMRKEIGQIRKKIDALNKELKPLGLTCQKKEKEYKDA 186
           GRVQEESRRLASIREEL+AIAGDPMRKEIGQIRKKIDALNKELKPLG+TCQKKEKEYKDA
Sbjct: 61  GRVQEESRRLASIREELDAIAGDPMRKEIGQIRKKIDALNKELKPLGITCQKKEKEYKDA 120

Query: 187 LDVFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELKQ 225
           LD FNEKNNEKVQLISKLMEMVGESEKLRLKRLEEL +
Sbjct: 121 LDAFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSK 158

[Close]

BLAST of Clc04G10260 vs. NCBI nr
Match: XP_008462544.1 (PREDICTED: uncharacterized protein LOC103500877 [Cucumis melo])

HSP 1 Score: 256.9 bits (655), Expect = 1.7e-64
Identity = 142/159 (89.31%), Postives = 150/159 (94.34%), Query Frame = 0


Query: 67  MQNDQN-PHQLQLMLDNSASLSFSSKEDDDMSKSALSAFREKEEEIDRMRTELHNKLQAR 126
           MQ DQN P QLQ ML+NS +LSFSSKEDD+MSKSAL+AFREKEEEIDRMRTELHNKLQ R
Sbjct: 1   MQTDQNPPQQLQTMLENSGNLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVR 60

Query: 127 LGRVQEESRRLASIREELEAIAGDPMRKEIGQIRKKIDALNKELKPLGLTCQKKEKEYKD 186
           LGRVQEESRRL+S+REELEAI GDPMRKEIGQIRKKIDALNKELKPLG+TCQKKEKEYKD
Sbjct: 61  LGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDALNKELKPLGVTCQKKEKEYKD 120

Query: 187 ALDVFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELKQ 225
           ALD FNEKNNEKVQLISKLMEMVGESEKLRLKRLEEL +
Sbjct: 121 ALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSK 159

[Close]

BLAST of Clc04G10260 vs. NCBI nr
Match: XP_004143305.1 (uncharacterized protein LOC101209289 [Cucumis sativus] >KGN48239.1 hypothetical protein Csa_003193 [Cucumis sativus])

HSP 1 Score: 255.8 bits (652), Expect = 3.7e-64
Identity = 142/159 (89.31%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 67  MQNDQN-PHQLQLMLDNSASLSFSSKEDDDMSKSALSAFREKEEEIDRMRTELHNKLQAR 126
           MQ+DQN P QLQ ML+NSA+LSFSSKEDD+MSKSAL+AFREKEEEIDRMRTEL+NKLQ R
Sbjct: 1   MQSDQNPPQQLQAMLENSANLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLR 60

Query: 127 LGRVQEESRRLASIREELEAIAGDPMRKEIGQIRKKIDALNKELKPLGLTCQKKEKEYKD 186
           LGRVQEESRRL+S+REELEAI GDPMRKEIGQIRKKIDALNKELKPLG+TCQKKEKEYKD
Sbjct: 61  LGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDALNKELKPLGVTCQKKEKEYKD 120

Query: 187 ALDVFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELKQ 225
           ALD FNEKNNEKVQLISKLMEMVGESEKLRLKRLEEL +
Sbjct: 121 ALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSK 159

[Close]

BLAST of Clc04G10260 vs. NCBI nr
Match: XP_023543803.1 (uncharacterized protein LOC111803564 [Cucurbita pepo subsp. pepo] >KAG7034517.1 hypothetical protein SDJN02_04247 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243.0 bits (619), Expect = 2.5e-60
Identity = 133/158 (84.18%), Postives = 144/158 (91.14%), Query Frame = 0


Query: 67  MQNDQNPHQLQLMLDNSASLSFSSKEDDDMSKSALSAFREKEEEIDRMRTELHNKLQARL 126
           MQN+QNP QLQ+ML NS +LSFSSKED++MSKSALSAFREKEEEI+RMRTEL  KLQARL
Sbjct: 1   MQNEQNPQQLQVMLQNSGNLSFSSKEDEEMSKSALSAFREKEEEIERMRTELQQKLQARL 60

Query: 127 GRVQEESRRLASIREELEAIAGDPMRKEIGQIRKKIDALNKELKPLGLTCQKKEKEYKDA 186
           GRV+EESRRLASIREELE I GDP RKEIGQIRK+ID LNKELKPLG  CQKKEKEYKDA
Sbjct: 61  GRVEEESRRLASIREELEGIDGDPTRKEIGQIRKRIDTLNKELKPLGQICQKKEKEYKDA 120

Query: 187 LDVFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELKQ 225
           LD FNEKNNEKVQ ISKLMEMVGESE++RLKRLEEL +
Sbjct: 121 LDAFNEKNNEKVQCISKLMEMVGESERVRLKRLEELSK 158

[Close]

BLAST of Clc04G10260 vs. NCBI nr
Match: XP_022979025.1 (uncharacterized protein LOC111478791 [Cucurbita maxima])

HSP 1 Score: 243.0 bits (619), Expect = 2.5e-60
Identity = 133/158 (84.18%), Postives = 144/158 (91.14%), Query Frame = 0


Query: 67  MQNDQNPHQLQLMLDNSASLSFSSKEDDDMSKSALSAFREKEEEIDRMRTELHNKLQARL 126
           MQN+QNP QLQ+ML NS +LSFSSKED++MSKSALSAFREKEEEI+RMRTEL  KLQARL
Sbjct: 1   MQNEQNPQQLQVMLQNSGNLSFSSKEDEEMSKSALSAFREKEEEIERMRTELQQKLQARL 60

Query: 127 GRVQEESRRLASIREELEAIAGDPMRKEIGQIRKKIDALNKELKPLGLTCQKKEKEYKDA 186
           GRV+EESRRLASIREELE I GDP RKEIGQIRK+ID LNKELKPLG  CQKKEKEYKDA
Sbjct: 61  GRVEEESRRLASIREELEGIDGDPTRKEIGQIRKRIDTLNKELKPLGQICQKKEKEYKDA 120

Query: 187 LDVFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELKQ 225
           LD FNEKNNEKVQ ISKLMEMVGESE++RLKRLEEL +
Sbjct: 121 LDAFNEKNNEKVQCISKLMEMVGESERVRLKRLEELSK 158

[Close]

BLAST of Clc04G10260 vs. ExPASy TrEMBL
Match: A0A1S3CIS0 (RAB6-interacting golgin OS=Cucumis melo OX=3656 GN=LOC103500877 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 8.1e-65
Identity = 142/159 (89.31%), Postives = 150/159 (94.34%), Query Frame = 0


Query: 67  MQNDQN-PHQLQLMLDNSASLSFSSKEDDDMSKSALSAFREKEEEIDRMRTELHNKLQAR 126
           MQ DQN P QLQ ML+NS +LSFSSKEDD+MSKSAL+AFREKEEEIDRMRTELHNKLQ R
Sbjct: 1   MQTDQNPPQQLQTMLENSGNLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVR 60

Query: 127 LGRVQEESRRLASIREELEAIAGDPMRKEIGQIRKKIDALNKELKPLGLTCQKKEKEYKD 186
           LGRVQEESRRL+S+REELEAI GDPMRKEIGQIRKKIDALNKELKPLG+TCQKKEKEYKD
Sbjct: 61  LGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDALNKELKPLGVTCQKKEKEYKD 120

Query: 187 ALDVFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELKQ 225
           ALD FNEKNNEKVQLISKLMEMVGESEKLRLKRLEEL +
Sbjct: 121 ALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSK 159

[Close]

BLAST of Clc04G10260 vs. ExPASy TrEMBL
Match: A0A0A0KHE9 (RAB6-interacting golgin OS=Cucumis sativus OX=3659 GN=Csa_6G450440 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.8e-64
Identity = 142/159 (89.31%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 67  MQNDQN-PHQLQLMLDNSASLSFSSKEDDDMSKSALSAFREKEEEIDRMRTELHNKLQAR 126
           MQ+DQN P QLQ ML+NSA+LSFSSKEDD+MSKSAL+AFREKEEEIDRMRTEL+NKLQ R
Sbjct: 1   MQSDQNPPQQLQAMLENSANLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLR 60

Query: 127 LGRVQEESRRLASIREELEAIAGDPMRKEIGQIRKKIDALNKELKPLGLTCQKKEKEYKD 186
           LGRVQEESRRL+S+REELEAI GDPMRKEIGQIRKKIDALNKELKPLG+TCQKKEKEYKD
Sbjct: 61  LGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDALNKELKPLGVTCQKKEKEYKD 120

Query: 187 ALDVFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELKQ 225
           ALD FNEKNNEKVQLISKLMEMVGESEKLRLKRLEEL +
Sbjct: 121 ALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSK 159

[Close]

BLAST of Clc04G10260 vs. ExPASy TrEMBL
Match: A0A6J1IS07 (RAB6-interacting golgin OS=Cucurbita maxima OX=3661 GN=LOC111478791 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 1.2e-60
Identity = 133/158 (84.18%), Postives = 144/158 (91.14%), Query Frame = 0


Query: 67  MQNDQNPHQLQLMLDNSASLSFSSKEDDDMSKSALSAFREKEEEIDRMRTELHNKLQARL 126
           MQN+QNP QLQ+ML NS +LSFSSKED++MSKSALSAFREKEEEI+RMRTEL  KLQARL
Sbjct: 1   MQNEQNPQQLQVMLQNSGNLSFSSKEDEEMSKSALSAFREKEEEIERMRTELQQKLQARL 60

Query: 127 GRVQEESRRLASIREELEAIAGDPMRKEIGQIRKKIDALNKELKPLGLTCQKKEKEYKDA 186
           GRV+EESRRLASIREELE I GDP RKEIGQIRK+ID LNKELKPLG  CQKKEKEYKDA
Sbjct: 61  GRVEEESRRLASIREELEGIDGDPTRKEIGQIRKRIDTLNKELKPLGQICQKKEKEYKDA 120

Query: 187 LDVFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELKQ 225
           LD FNEKNNEKVQ ISKLMEMVGESE++RLKRLEEL +
Sbjct: 121 LDAFNEKNNEKVQCISKLMEMVGESERVRLKRLEELSK 158

[Close]

BLAST of Clc04G10260 vs. ExPASy TrEMBL
Match: A0A6J1EJF7 (RAB6-interacting golgin OS=Cucurbita moschata OX=3662 GN=LOC111433155 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 7.8e-60
Identity = 132/158 (83.54%), Postives = 143/158 (90.51%), Query Frame = 0


Query: 67  MQNDQNPHQLQLMLDNSASLSFSSKEDDDMSKSALSAFREKEEEIDRMRTELHNKLQARL 126
           MQN+QNP QLQ+ML NS +LSFSSKED++MSKSALSAFREKEEEI+RMRTEL  KLQARL
Sbjct: 1   MQNEQNPQQLQVMLQNSGNLSFSSKEDEEMSKSALSAFREKEEEIERMRTELQQKLQARL 60

Query: 127 GRVQEESRRLASIREELEAIAGDPMRKEIGQIRKKIDALNKELKPLGLTCQKKEKEYKDA 186
           GRV+EESRRLASIREELE I GDP RKEIGQIRK+ID LNKELKPLG  CQKKEKEYKDA
Sbjct: 61  GRVEEESRRLASIREELEGIDGDPTRKEIGQIRKRIDTLNKELKPLGQICQKKEKEYKDA 120

Query: 187 LDVFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELKQ 225
           LD FNEKNNEKV  ISKLMEMVGESE++RLKRLEEL +
Sbjct: 121 LDAFNEKNNEKVLCISKLMEMVGESERVRLKRLEELSK 158

[Close]

BLAST of Clc04G10260 vs. ExPASy TrEMBL
Match: A0A5A7SM04 (RAB6-interacting golgin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G001330 PE=3 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 1.7e-59
Identity = 137/159 (86.16%), Postives = 144/159 (90.57%), Query Frame = 0


Query: 67  MQNDQN-PHQLQLMLDNSASLSFSSKEDDDMSKSALSAFREKEEEIDRMRTELHNKLQAR 126
           MQ DQN P QLQ ML+NS +LSFSSKEDD+MSKSAL+AFREKEEEIDRMRTELHNKLQ R
Sbjct: 1   MQTDQNPPQQLQTMLENSGNLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVR 60

Query: 127 LGRVQEESRRLASIREELEAIAGDPMRKEIGQIRKKIDALNKELKPLGLTCQKKEKEYKD 186
           LGRVQEESRRL+S+REELEAI GDPMRKEIGQIRKKIDALNKELKPLG      EKEYKD
Sbjct: 61  LGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDALNKELKPLG------EKEYKD 120

Query: 187 ALDVFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELKQ 225
           ALD FNEKNNEKVQLISKLMEMVGESEKLRLKRLEEL +
Sbjct: 121 ALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSK 153

[Close]

BLAST of Clc04G10260 vs. TAIR 10
Match: AT3G09980.1 (Family of unknown function (DUF662) )

HSP 1 Score: 177.9 bits (450), Expect = 9.2e-45
Identity = 100/158 (63.29%), Postives = 131/158 (82.91%), Query Frame = 0


Query: 74  HQLQLMLDNSASLSFS---SKEDDDMSKSALSAFREKEEEIDRMRTELHNKLQARLGRVQ 133
           H  QL    S S+SFS   SKED++MS++ALSAFR KEEEI++ + E+  ++QA+LGRV+
Sbjct: 20  HSRQLGAQLSGSMSFSSQMSKEDEEMSRTALSAFRAKEEEIEKKKMEIRERVQAQLGRVE 79

Query: 134 EESRRLASIREELEAIAGDPMRKEIGQIRKKIDALNKELKPLGLTCQKKEKEYKDALDVF 193
           EE++RLA IREELE +A DPMRKE+  +RKKID++NKELKPLG T QKKE+EYK+AL+ F
Sbjct: 80  EETKRLALIREELEGLA-DPMRKEVAMVRKKIDSVNKELKPLGHTVQKKEREYKEALEAF 139

Query: 194 NEKNNEKVQLISKLMEMVGESEKLRLKRLEELKQKQNS 229
           NEKN EKVQLI++LME+VGESEK+R+K+LEEL +  +S
Sbjct: 140 NEKNREKVQLITRLMELVGESEKMRMKKLEELSKNIDS 176

[Close]

BLAST of Clc04G10260 vs. TAIR 10
Match: AT3G52920.2 (Family of unknown function (DUF662) )

HSP 1 Score: 177.9 bits (450), Expect = 9.2e-45
Identity = 99/143 (69.23%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 85  SLSFS---SKEDDDMSKSALSAFREKEEEIDRMRTELHNKLQARLGRVQEESRRLASIRE 144
           SLSFS   SKED++M++SALSAFR KE+EI++ + E+  +++A+LGRV+EE+RRLASIRE
Sbjct: 17  SLSFSSQMSKEDEEMARSALSAFRAKEDEIEKRKMEVRERVKAQLGRVEEETRRLASIRE 76

Query: 145 ELEAIAGDPMRKEIGQIRKKIDALNKELKPLGLTCQKKEKEYKDALDVFNEKNNEKVQLI 204
           ELE +A DPMRKE+  +RKKID++NKELKPLG T QKKE+EYK+ALD FNEKN EKVQLI
Sbjct: 77  ELETMA-DPMRKEVNWVRKKIDSVNKELKPLGSTVQKKEREYKEALDTFNEKNREKVQLI 136

Query: 205 SKLMEMVGESEKLRLKRLEELKQ 225
           +KLME+VGESEKLRLK+L+EL +
Sbjct: 137 TKLMELVGESEKLRLKKLDELSR 158

[Close]

BLAST of Clc04G10260 vs. TAIR 10
Match: AT3G52920.1 (Family of unknown function (DUF662) )

HSP 1 Score: 173.7 bits (439), Expect = 1.7e-43
Identity = 100/146 (68.49%), Postives = 126/146 (86.30%), Query Frame = 0


Query: 85  SLSFS---SKEDDDMSKSALSAFREKEEEIDRMRTELHNKLQARLGRVQEESRRLASIRE 144
           SLSFS   SKED++M++SALSAFR KE+EI++ + E+  +++A+LGRV+EE+RRLASIRE
Sbjct: 17  SLSFSSQMSKEDEEMARSALSAFRAKEDEIEKRKMEVRERVKAQLGRVEEETRRLASIRE 76

Query: 145 ELEAIAGDPMRKEIGQIRKKIDALNKELKPLGLTCQKKEKEYKDALDVFNEKNNEKVQLI 204
           ELE +A DPMRKE+  +RKKID++NKELKPLG T QKKE+EYK+ALD FNEKN EKVQLI
Sbjct: 77  ELETMA-DPMRKEVNWVRKKIDSVNKELKPLGSTVQKKEREYKEALDTFNEKNREKVQLI 136

Query: 205 SKLMEM---VGESEKLRLKRLEELKQ 225
           +KLMEM   VGESEKLRLK+L+EL +
Sbjct: 137 TKLMEMGQLVGESEKLRLKKLDELSR 161

[Close]

BLAST of Clc04G10260 vs. TAIR 10
Match: AT2G36410.2 (Family of unknown function (DUF662) )

HSP 1 Score: 172.2 bits (435), Expect = 5.0e-43
Identity = 100/168 (59.52%), Postives = 138/168 (82.14%), Query Frame = 0


Query: 60  QHQDERKMQNDQNPHQLQLMLDNSASLSFS---SKEDDDMSKSALSAFREKEEEIDRMRT 119
           Q Q + + Q  Q  +++ L   ++ SLSFS   S+ED++M++SALSAFR KE+EI++ R 
Sbjct: 24  QPQSQPQPQPQQQSNEMVL---HTGSLSFSSHMSREDEEMTRSALSAFRAKEDEIEKRRM 83

Query: 120 ELHNKLQARLGRVQEESRRLASIREELEAIAGDPMRKEIGQIRKKIDALNKELKPLGLTC 179
           E+  ++QA+LGRV++E++RL++IREELE++A DPMRKE+  +RKKID++NKELKPLG T 
Sbjct: 84  EVRERIQAQLGRVEQETKRLSTIREELESMA-DPMRKEVSVVRKKIDSVNKELKPLGSTV 143

Query: 180 QKKEKEYKDALDVFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELKQ 225
           QKKE+EYK+ALD FNEKN EKVQLI+KLME+VGESEKLR+ +LEEL +
Sbjct: 144 QKKEREYKEALDTFNEKNREKVQLITKLMELVGESEKLRMIKLEELSK 187

[Close]

BLAST of Clc04G10260 vs. TAIR 10
Match: AT2G36410.3 (Family of unknown function (DUF662) )

HSP 1 Score: 168.3 bits (425), Expect = 7.3e-42
Identity = 99/168 (58.93%), Postives = 136/168 (80.95%), Query Frame = 0


Query: 60  QHQDERKMQNDQNPHQLQLMLDNSASLSFS---SKEDDDMSKSALSAFREKEEEIDRMRT 119
           Q Q + + Q  Q  +++ L   ++ SLSFS   S+ED++M++SALSAFR KE+EI++ R 
Sbjct: 24  QPQSQPQPQPQQQSNEMVL---HTGSLSFSSHMSREDEEMTRSALSAFRAKEDEIEKRRM 83

Query: 120 ELHNKLQARLGRVQEESRRLASIREELEAIAGDPMRKEIGQIRKKIDALNKELKPLGLTC 179
           E+  ++QA+LGRV++E++RL++IREELE++A DPMRKE+  +RKKID++NKELKPLG T 
Sbjct: 84  EVRERIQAQLGRVEQETKRLSTIREELESMA-DPMRKEVSVVRKKIDSVNKELKPLGSTV 143

Query: 180 QKKEKEYKDALDVFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELKQ 225
           QKK  EYK+ALD FNEKN EKVQLI+KLME+VGESEKLR+ +LEEL +
Sbjct: 144 QKKVMEYKEALDTFNEKNREKVQLITKLMELVGESEKLRMIKLEELSK 187

The following BLAST results are available for this feature:

BLAST of Clc04G10260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882826.1	7.2e-68	92.41	uncharacterized protein LOC120073968 isoform X1 [Benincasa hispida]	[more]
XP_008462544.1	1.7e-64	89.31	PREDICTED: uncharacterized protein LOC103500877 [Cucumis melo]	[more]
XP_004143305.1	3.7e-64	89.31	uncharacterized protein LOC101209289 [Cucumis sativus] >KGN48239.1 hypothetical ...	[more]
XP_023543803.1	2.5e-60	84.18	uncharacterized protein LOC111803564 [Cucurbita pepo subsp. pepo] >KAG7034517.1 ...	[more]
XP_022979025.1	2.5e-60	84.18	uncharacterized protein LOC111478791 [Cucurbita maxima]	[more]

BLAST of Clc04G10260 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc04G10260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CIS0	8.1e-65	89.31	RAB6-interacting golgin OS=Cucumis melo OX=3656 GN=LOC103500877 PE=3 SV=1	[more]
A0A0A0KHE9	1.8e-64	89.31	RAB6-interacting golgin OS=Cucumis sativus OX=3659 GN=Csa_6G450440 PE=3 SV=1	[more]
A0A6J1IS07	1.2e-60	84.18	RAB6-interacting golgin OS=Cucurbita maxima OX=3661 GN=LOC111478791 PE=3 SV=1	[more]
A0A6J1EJF7	7.8e-60	83.54	RAB6-interacting golgin OS=Cucurbita moschata OX=3662 GN=LOC111433155 PE=3 SV=1	[more]
A0A5A7SM04	1.7e-59	86.16	RAB6-interacting golgin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Clc04G10260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09980.1	9.2e-45	63.29	Family of unknown function (DUF662)	[more]
AT3G52920.2	9.2e-45	69.23	Family of unknown function (DUF662)	[more]
AT3G52920.1	1.7e-43	68.49	Family of unknown function (DUF662)	[more]
AT2G36410.2	5.0e-43	59.52	Family of unknown function (DUF662)	[more]
AT2G36410.3	7.3e-42	58.93	Family of unknown function (DUF662)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 129..149
None	No IPR available	COILS	Coil	Coil	coord: 104..124
None	No IPR available	COILS	Coil	Coil	coord: 176..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..74
None	No IPR available	PANTHER	PTHR21470:SF8	EXPRESSED PROTEIN	coord: 71..223
IPR007033	RAB6-interacting golgin	PFAM	PF04949	Transcrip_act	coord: 82..225 e-value: 1.4E-59 score: 200.4
IPR007033	RAB6-interacting golgin	PANTHER	PTHR21470	RAB6-INTERACTING PROTEIN GORAB	coord: 71..223

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G10260.1	Clc04G10260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005794	Golgi apparatus