Clc04G09710 (gene) Watermelon (cordophanus) v2

Overview
NameClc04G09710
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptiontranscription factor RAX2-like
LocationClcChr04: 23253437 .. 23254420 (+)
RNA-Seq ExpressionClc04G09710
SyntenyClc04G09710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATTTATTTTTAAAATTTGACTGTTTCTTTAGAAATTAGTTAAGGTGAAATCCATTTCATATTTAAAAAAAAAATCAGCAAGTAAATAAACACAAATTTAAAAAAATGAAATTGTCATTAAACGATTCTTAGTTTTTGTTTTGTTTTTTCTTTTCAAAAATTAAATTTATATACACTACTTAAACCTGTAAAAATGTATTTGTTTTGTCATTTACTCCCTACTAATACTTAAAAAAAACCAAGTTGAATTTCACAAACTAAAAAAAAAAAGCAGTGTTTAGAAGTTTATTTTTATTTTTGAAATATGATTAAGAGTTCAAATGATTCAAAGTGAAACTAATGCTAGAAAAAATGGAGAAAAAGACAAACCAAAATTTCAAAACAAAAAATTAAAATTGAATTCGTTATAAAAAAGGAATTTAAATTTTAAGTTTTTTTATGCAGGTGGTCGATCATTGCAGCTCAATTGCCTGGTCGGACAGACAACGATATAAAAAACTATTGGAACACAAAGTTGAAGAAGAAACTAATCACAGGTTTAATTTCATCTAATTTCTCTCAAGCTTCTCGGCCGTTGCATACGGCGGCGAACCCATCTCCGAGCTGCAACAATAGCAATATGCAATTGGTGCAGCCAAATTATTATTATTATTATGATCACAAACAAGAAAATATCCTTTCCTTTGGAGGGGATCATCAGGCAGCCAGTTGTAGCTCTTCCGACGGCAGCTCCGGCGGCAACCACCTCGGCTACGGCCGAGGAGAAATGGAATATGACCAAAATGGGAAATTCTATGGTGTAATGAAAAAGGAGAATGGGTGTAGTGACAAACAAAGTGGGGTGCGGAAAGAAGAAACTCCATTAGAGTACAGTTTAGAAGAAATCAATAGGCTGATTAATAATAATAATAATAATAATAATAATTTTTCACTCAATGAAAATTACAAGAGTGGAGAGACATTCATGTATTCTTGTTGA

mRNA sequence

ATGGGTTTAATTTCATCTAATTTCTCTCAAGCTTCTCGGCCGTTGCATACGGCGGCGAACCCATCTCCGAGCTGCAACAATAGCAATATGCAATTGGTGCAGCCAAATTATTATTATTATTATGATCACAAACAAGAAAATATCCTTTCCTTTGGAGGGGATCATCAGGCAGCCAGTTGTAGCTCTTCCGACGGCAGCTCCGGCGGCAACCACCTCGGCTACGGCCGAGGAGAAATGGAATATGACCAAAATGGGAAATTCTATGGTGTAATGAAAAAGGAGAATGGGTGTAGTGACAAACAAAGTGGGGTGCGGAAAGAAGAAACTCCATTAGAGTACAGTTTAGAAGAAATCAATAGGCTGATTAATAATAATAATAATAATAATAATAATTTTTCACTCAATGAAAATTACAAGAGTGGAGAGACATTCATGTATTCTTGTTGA

Coding sequence (CDS)

ATGGGTTTAATTTCATCTAATTTCTCTCAAGCTTCTCGGCCGTTGCATACGGCGGCGAACCCATCTCCGAGCTGCAACAATAGCAATATGCAATTGGTGCAGCCAAATTATTATTATTATTATGATCACAAACAAGAAAATATCCTTTCCTTTGGAGGGGATCATCAGGCAGCCAGTTGTAGCTCTTCCGACGGCAGCTCCGGCGGCAACCACCTCGGCTACGGCCGAGGAGAAATGGAATATGACCAAAATGGGAAATTCTATGGTGTAATGAAAAAGGAGAATGGGTGTAGTGACAAACAAAGTGGGGTGCGGAAAGAAGAAACTCCATTAGAGTACAGTTTAGAAGAAATCAATAGGCTGATTAATAATAATAATAATAATAATAATAATTTTTCACTCAATGAAAATTACAAGAGTGGAGAGACATTCATGTATTCTTGTTGA

Protein sequence

MGLISSNFSQASRPLHTAANPSPSCNNSNMQLVQPNYYYYYDHKQENILSFGGDHQAASCSSSDGSSGGNHLGYGRGEMEYDQNGKFYGVMKKENGCSDKQSGVRKEETPLEYSLEEINRLINNNNNNNNNFSLNENYKSGETFMYSC
Homology
[Close]
BLAST of Clc04G09710 vs. NCBI nr
Match: XP_038882300.1 (transcription factor RAX2-like [Benincasa hispida])

HSP 1 Score: 201.8 bits (512), Expect = 4.0e-48
Identity = 115/148 (77.70%), Postives = 119/148 (80.41%), Query Frame = 0 

Query: 3   LISSNFSQASRPLHTAANPSPSCNNSNMQLVQPNYY-YYYDHKQENILSFGGDHQAASCS 62
           L SSNF+Q S P HTAANPSPSCNN NMQLVQPNYY YYYDH QENILSFGGD QAASCS
Sbjct: 121 LNSSNFNQVSPPPHTAANPSPSCNNKNMQLVQPNYYNYYYDHIQENILSFGGD-QAASCS 180

Query: 63  SSDGSSGGNHLGYGRGEMEYDQNGKFYGVMKKENGCSDKQSGVRKEETP-LEYSLEEINR 122
           SSDGSSGGNHLGYG GEME+DQNGKFYG MKKE G         KEE P LEY+LEEINR
Sbjct: 181 SSDGSSGGNHLGYGGGEMEFDQNGKFYGAMKKEVG---------KEENPILEYNLEEINR 240

Query: 123 LINNNNNNNNNFSLNENYKSGETFMYSC 149
           LI    +NNN FS NENYKSGETFMY C
Sbjct: 241 LI----SNNNKFSFNENYKSGETFMYYC 254

[Close]
BLAST of Clc04G09710 vs. NCBI nr
Match: XP_022143880.1 (transcription factor RAX2-like [Momordica charantia])

HSP 1 Score: 99.4 bits (246), Expect = 2.8e-17
Identity = 81/148 (54.73%), Postives = 88/148 (59.46%), Query Frame = 0 

Query: 19  ANPSPSCN-----NSNMQLVQPNYYYYYDHKQENILSFGGDHQAASCSSSDGSSGGNHLG 78
           ANPSP CN     N+NMQ      YYY +  QEN LSFGGD   ASCSSSDG  GG    
Sbjct: 157 ANPSPGCNDSVGLNNNMQ-----RYYYGNQIQENFLSFGGDQ--ASCSSSDGGGGGGG-S 216

Query: 79  YGRGEMEYDQNGKFY------------GVMKKENGCSDKQSGVRKEETPLEYSLEEINRL 138
           YG+ EM + QNG FY            GVM  E G S+K+ GV KEETPLE S EEI RL
Sbjct: 217 YGK-EMGHFQNG-FYGGVEDHHRKQPIGVMGNEGGWSEKEIGVWKEETPLECSFEEIKRL 276

Query: 139 I-----NNNNNNNNN--FSLNENYKSGE 143
           I     NNN NNNNN   S +ENYKSGE
Sbjct: 277 ISCSDDNNNYNNNNNVCVSFDENYKSGE 294

[Close]
BLAST of Clc04G09710 vs. ExPASy TrEMBL
Match: A0A6J1CQ16 (transcription factor RAX2-like OS=Momordica charantia OX=3673 GN=LOC111013686 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.4e-17
Identity = 81/148 (54.73%), Postives = 88/148 (59.46%), Query Frame = 0 

Query: 19  ANPSPSCN-----NSNMQLVQPNYYYYYDHKQENILSFGGDHQAASCSSSDGSSGGNHLG 78
           ANPSP CN     N+NMQ      YYY +  QEN LSFGGD   ASCSSSDG  GG    
Sbjct: 157 ANPSPGCNDSVGLNNNMQ-----RYYYGNQIQENFLSFGGDQ--ASCSSSDGGGGGGG-S 216

Query: 79  YGRGEMEYDQNGKFY------------GVMKKENGCSDKQSGVRKEETPLEYSLEEINRL 138
           YG+ EM + QNG FY            GVM  E G S+K+ GV KEETPLE S EEI RL
Sbjct: 217 YGK-EMGHFQNG-FYGGVEDHHRKQPIGVMGNEGGWSEKEIGVWKEETPLECSFEEIKRL 276

Query: 139 I-----NNNNNNNNN--FSLNENYKSGE 143
           I     NNN NNNNN   S +ENYKSGE
Sbjct: 277 ISCSDDNNNYNNNNNVCVSFDENYKSGE 294

The following BLAST results are available for this feature:
BLAST of Clc04G09710 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038882300.14.0e-4877.70transcription factor RAX2-like [Benincasa hispida][more]
XP_022143880.12.8e-1754.73transcription factor RAX2-like [Momordica charantia][more]
BLAST of Clc04G09710 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc04G09710 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CQ161.4e-1754.73transcription factor RAX2-like OS=Momordica charantia OX=3673 GN=LOC111013686 PE... [more]
BLAST of Clc04G09710 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc04G09710.1Clc04G09710.1mRNA