Clc04G09550 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G09550
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	RNA polymerase sigma factor sigF
Location	ClcChr04: 23122224 .. 23127169 (+)
RNA-Seq Expression	Clc04G09550
Synteny	Clc04G09550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTAAGATGGGGTTGAAAAAGAGGGGAGAATAGAGGAAACGTTGAGAAGTAAGATGACATTAACAGCCTTTGTTCATATAATAGTAAAAGTATTTTTTTAAAAAAAAAAAATTTAATTGAAGGGTATTTTTAAAACTTTTTAAGGTATTTTTGACACAAAACATTAACGATTTCCATAAAAAAAATTAACGCTAAAAGTATTTTTTTAATTCATTTTGAAAGTTTAAAGTTATTTTAAAAAATTTTGAAAGATAGAATATATTTTTTAGTCAAAGTATAAAGTTTAGGTGTATTTGGTATAATTTACCTAAAAATGAATTTGCATAATTTGAGGGAGAAAATGGTCTTTTCAACGACACATCAACCGCGCAGTAACTGTATATAAAGGGCATGAAATGCGCCTTTTTACAAATCTTGTCGTCGTAATCTATTGCATCCGTATGCTTCTTTAAATGTGCAGTCCTCTTCGACTTTCTTTTCTTTCTCTCACACATTTCTTCGATAGGAAGCTTCAGCCTTAAACCTCGTTGATCGCTTTCGCCTTTGATTCAACTGTGGTAAGTGCTTCTGTTTATGCTTAATGTCATGATTTTCATTCTCTGATATGCAACTGATTCATTGATCCAGTCCGAGTCCGCCATTGTTTTAAGGTTTTTTCTTTGATGAAGTGTTTCGGATTCTTTAATCGTTCTTCTGTACGTTCTTCAGTTCTCTTCGTCTTCTTGTTGTTGTTTATACGAGTTTGTTGTTATTTGTTTGATTCAAATTCATCCACTCTTGAAAGCTTTGGATTGGTTGGTAATTGCATGGTTTTTTGATCGGCATCCGAAGATATTAATGCTTAGAGGTCTTTATTGTTAGATCAATATGAAATGTGTTCCCTAGTTATTATTTATGTATTGAACTTAGTTGTTAGAAGGTGCAGTTTGAAGGAACTAATTTAATTTCTACTTTCCAGACATCAACAAGAACTTTGTGGTCTAATGATTATTGATCTCGTTTCGTGTTTGTAATCATCAGCAGTTCATTTTATCCGTCGTAGGTGAGAGATTTTAAAGGTCTCTGGTGGAGAAACTACCCTTACTTCAGTAGTTGTTATGAGAAGATGGTCATGAACGATTTTGATTCCGATGCGATTCGTTGGGGTCTTCGCTTTTTCAATGGGGACTCAAATGGGGACTTATCGTATAGTACCGAGTACTTTCCTGATATGGCACAACACGATGTCAATTTCTATGAGCATTATTATGGAAATCATTGCAATAATGAGGTTAACCATGTGGAGAACGACGAGATTATTGCACACACTCTTCAGGAGGAGTTTTCTCAATTAGAAATCGCAGAGGCCTCGGGATATTCAAATGTGGAAGATCCCTGCCAAGCGTCGAAGTTTGGGCTTGGTTGGAACAATCGATCCTCAAGGAACTACAGTTCAGGTTCTTATTAACACTACCCACCCTCTTCCTCTTTCTCTGCATATGTGGGATGGTGATCCTTACACGGTGCGTAAATTTTTTTACTATATGTAGAAAACGATTCTGTTGAAGATGATGTTGAAACCATGGAGCCTTCTAGTTCATGTTCTAGTCCAGGTCAAGAGGATAATTACTATCCATATGGGCATGATAATCAAGTAGATTGGAAAATGGATCAAATGATTCCAGCACCTGTGAGAATTTCTATAGTTACATCTTTTTATTTTGGCATAGCAGTTGAAGTAAATTATAGATTCATTGTGTAAACAAAATATTTATCTCCCAGATTGATCAATTTATGCCAGACATTTTATGGAGCATGCTTTTTTGCAGGACTTGTGACTGCTGACATCTAGGAATTCTCTATATCTGCTTAGAATATGGATTTGTTTTCCTCATGATTGGAAAGTATTTTGTAATGATGTTTGTAGGTTCTTTTCTTTTTTTTTTTTTTTTGGAAAGTTGGGAAGATGTGCATTTTTTGTCAGTCTGGAATGATTACTGAAACCTTCGGGGTATTGTACATTTGGTAGAGATGCTTTCTCTGCGAACCATTGACTTGCTCATGTCCACTTTAACTGATTCCTTACTGCAGATTTTTGGTTTTCACTATTTACTTAACTTTTTGAACGAGAAGCAAGGGATTTTTTGAAACTGTATGGTTGCAAAAGCCGATCTGTACTTCTCCAATTCCTGTGCTAACATATGTATGTGGGACCCATGATAATTATCTGTGTTTGTCTGCCTACTACAAAGTCCCCTTACAACTTCTCATGTGATTTATGCAGCATGTCCCAAGAATTAATGGTGAGATTCCTCCAATTGATGAAGTAACTTCAGATCATCAAAGGTTGCTGGATAGGTAATATCTCAAAAACCCTGTTGTTTGATATGGCTGAATCTGTGGTCTATTGTTTATAGTTTGTGTGTGTGAATTTCTTTTACCATTTCAAGTCTGCTACTTGGTGCTTTTTCTCCTAGAGTATAATTGTTCTTTGACATTGAATTTTGGGTATTAATTGTTATGACTGTCCACTGCCTTTTCAAACTTAGGTTGAAGGTATATGATTTTGTTGAACGCAAGGTTAAAGGTGATGGTAATTGTCAGGTCAGTAGTTTCTCAGTCGTATGGATTTGGTCACAATTGAACAGTTTGAATTGACCATGACATACTCATATCAGTTTTCAATTCTCAGTTCCGTGCTTTATCAGATCAACTATTTGGAACATCTGATCGCCACAAGATGGTGAGAGAAAATGTTGTGAATCAGGTTTGTCATTGTTTCTTATAGCTTTACACTTGTATCTTTTCATATTTACTGGATTATAACCTATTTAACATGAAACTCTCTCTCTCTCCTTTTCTTTGTTCTTTCATACCAGCTCAAATCACATCGGGAGATTTATGAGGGATATGTTCCCATGGCATATGATGATTATTTGGAAAAGATGTCCATGTACCGTTTGAACTTCTATTTATTTAATTCTTTTCGACCCCACTTTTTAGTCCTGTTTGGATAATTCTTATTCTACATTTGAAATTTTTCTAGGAGTGGTGAGTGGGGTGATCATGTAACACTACAGGCAGCTGCTGATTGGGTATGGCCATTGCAAGACATTGTTTCCGGCTTTGAATTGTTTTCTTAATATATTGTTGCAACTTTGATACAATATTTTTGTTGTTCATTCATACAGTGAACCCAAATCTCTGAAAAATAATTTCTACTACGCTAATATCTAGAATGGTAAAACAATCAAGCAAACTTGAGACAGAGCTTTAAACGCTGCAAGTTCAGCCATCTTTTGTGTTCATTTGCTTATTTTTATATTAATTCAAGTTAAATGCCCATTGTATTATGCATCTTGGGGGACGTAACAATGCCCTGCTTATGCTGTAAATTTCCAGAATGAAGTTGCTAGATTGATTGAAAATGTAAAAGTCCATATCCTTCTCATGTCTTATAAAAATTTTGACCATTCACACCCTCCACCCTCCAACGAAGACTATGAGTGGGAGGTAAATGCTAATTGGGCCTTATGTCTGTTTTATGCTGCAGTATGGCGTTAAAATATTTGTTATGACTTCTTTTAAGGAAACCTGTTGTATAGAGATTCTCCCTAATTTTCAGAAGAAAAAGCAAGGTAAATTCTTAACTTTAATATTTATATTAACTCGTGTAACTTTTAGGTTTTCTGGTTCTTCTACTTGGTTATAGTCCTATGCATGACTCATTACTTATTCTTTAGCTGATTTATTTGGAACATGGCCATATTTAGTGCAGTACTCTTTTTTCTTCATTTATTTTTAGTCTTTCACCTGCATTTTTACTTTCATTTTCTCCTCCTTTGTAAATTCAGTAAGTTTGACTGGTGGAAGATGGACTGCAAATGTGCATCTGTTTTTTCCCTACCGCAGAACTCATGCACTGTTTTCCAGTTCTTTTTTGTCTCATTTATCGTATACCGAGTACTGCGAGATCATTTTCTCTTGCGAATGAACCCAAAACCATCCCTTTTATACCAAAAAGGGGCAGTTCAAACATTCACTCCGTCGACTTCTCTCCTCCTTTTGTAATCTACCATATTTTTCTATTAATCAATGGAACATTTCAATCACTTGTATGTACTTTTGTTTGCAAAGAACTTCACATATCGTCTTTTGTGCAACATGCAGTTATTTTCCTGAGCTTTTGGGCAGAGGTGCATTACAATTCAATCTATCCTCAAGGAGGTAATTATTTTACTCCATCTATAGTGAACCTAAAGTTTCCCGATGTTATTATCTCATGAGTGATCATTACCAACATGATTGGTTGAGCTTGAATATTGATTCTGTAGTAAGTCCATAACTCAAGCTCCATGTTCACTCAGGTGTTTCCTCAGTTCCAGATGAGCAATCAAATGACTCTAGAAAGAGGAGGAAATGGTGGATTTTCGGAAATAAGCATTAAGACTCCGAGCAAAAGGTGCAATAAGAACATTCATACAGACTTCGACGACTGGACTTCAATGTTTTCCATTTGTAACCAGAGAAACTCGGTCTGTCCTGCTCTGGATCTTATTTACAATTTTATATTAAATAGATTAATAAAATTTGCTGTCCTCTTGCACTTTATTGAACCTTTCCTTTGTGCTCTGCTTGAAGTAAATGGAACAAACTTGGATTTACTTTTTTTTTAGTTTATTCCGGATCCTTAACTTTTATAAATGTTACATTATTTGAACTAGCCGCTTTAGCTGCCATTTCTATGACCTTTTAGATGATTACATTAGATCCATACCTTAAAAATGCATTTTACAATCTCTCATTCACAGTTTTGATATTAATGCAAATCCTTCAAGCCTTCTTGCGCTTCAGAGAAGTGCAAATTCAGCCTCTTATGCATCAGTTCTCATTCCACCATCTTCATCTCCTTTTCCATCTTCTTCCTATTCTCCATTGGGATCGTTTTCATTCGAGTATTAG

mRNA sequence

ATGGAAGTGAGAGATTTTAAAGGTCTCTGGTGGAGAAACTACCCTTACTTCAGTAGTTGTTATGAGAAGATGGTCATGAACGATTTTGATTCCGATGCGATTCGTTGGGGTCTTCGCTTTTTCAATGGGGACTCAAATGGGGACTTATCGTATAGTACCGAGTACTTTCCTGATATGGCACAACACGATGTCAATTTCTATGAGCATTATTATGGAAATCATTGCAATAATGAGGTTAACCATGTGGAGAACGACGAGATTATTGCACACACTCTTCAGGAGGAGTTTTCTCAATTAGAAATCGCAGAGGCCTCGGGATATTCAAATGTGGAAGATCCCTGCCAAGCGTCGAAGTTTGGGCTTGGTTGGAACAATCGATCCTCAAGGAACTACAGTTCAGAAAACGATTCTGTTGAAGATGATGTTGAAACCATGGAGCCTTCTAGTTCATGTTCTAGTCCAGGTCAAGAGGATAATTACTATCCATATGGGCATGATAATCAAGTAGATTGGAAAATGGATCAAATGATTCCAGCACCTCATGTCCCAAGAATTAATGGTGAGATTCCTCCAATTGATGAAGTAACTTCAGATCATCAAAGGTTGCTGGATAGGTTGAAGGTATATGATTTTGTTGAACGCAAGGTTAAAGGTGATGGTAATTGTCAGTTCCGTGCTTTATCAGATCAACTATTTGGAACATCTGATCGCCACAAGATGGTGAGAGAAAATGTTGTGAATCAGCTCAAATCACATCGGGAGATTTATGAGGGATATGTTCCCATGGCATATGATGATTATTTGGAAAAGATGTCCATGAGTGGTGAGTGGGGTGATCATGTAACACTACAGGCAGCTGCTGATTGGAATGAAGTTGCTAGATTGATTGAAAATGTAAAAGTCCATATCCTTCTCATGTCTTATAAAAATTTTGACCATTCACACCCTCCACCCTCCAACGAAGACTATGAGTGGGAGTATGGCGTTAAAATATTTGTTATGACTTCTTTTAAGGAAACCTGTTGTATAGAGATTCTCCCTAATTTTCAGAAGAAAAAGCAAGATGGACTGCAAATGTGCATCTGTTTTTTCCCTACCGCAGAACTCATGCACTGTTTTCCAGTTCTTTTTTGTCTCATTTATCGTATACCGAGTACTGCGAGATCATTTTCTCTTGCGAATGAACCCAAAACCATCCCTTTTATACCAAAAAGGGGCAGTTCAAACATTCACTCCGTCGACTTCTCTCCTCCTTTTGTAATCTACCATATTTTTCTATTAATCAATGGAACATTTCAATCACTTGTATGTACTTTTGTTTGCAAAGAACTTCACATATCGTCTTTTGTGCAACATGCAGTTATTTTCCTGAGCTTTTGGGCAGAGGTGCATTACAATTCAATCTATCCTCAAGGAGGTAATTATTTTACTCCATCTATAGTGAACCTAAAGTTTCCCGATGTGTTTCCTCAGTTCCAGATGAGCAATCAAATGACTCTAGAAAGAGGAGGAAATGGTGGATTTTCGGAAATAAGCATTAAGACTCCGAGCAAAAGGTGCAATAAGAACATTCATACAGACTTCGACGACTGGACTTCAATTTTTGATATTAATGCAAATCCTTCAAGCCTTCTTGCGCTTCAGAGAAGTGCAAATTCAGCCTCTTATGCATCAGTTCTCATTCCACCATCTTCATCTCCTTTTCCATCTTCTTCCTATTCTCCATTGGGATCGTTTTCATTCGAGTATTAG

Coding sequence (CDS)

ATGGAAGTGAGAGATTTTAAAGGTCTCTGGTGGAGAAACTACCCTTACTTCAGTAGTTGTTATGAGAAGATGGTCATGAACGATTTTGATTCCGATGCGATTCGTTGGGGTCTTCGCTTTTTCAATGGGGACTCAAATGGGGACTTATCGTATAGTACCGAGTACTTTCCTGATATGGCACAACACGATGTCAATTTCTATGAGCATTATTATGGAAATCATTGCAATAATGAGGTTAACCATGTGGAGAACGACGAGATTATTGCACACACTCTTCAGGAGGAGTTTTCTCAATTAGAAATCGCAGAGGCCTCGGGATATTCAAATGTGGAAGATCCCTGCCAAGCGTCGAAGTTTGGGCTTGGTTGGAACAATCGATCCTCAAGGAACTACAGTTCAGAAAACGATTCTGTTGAAGATGATGTTGAAACCATGGAGCCTTCTAGTTCATGTTCTAGTCCAGGTCAAGAGGATAATTACTATCCATATGGGCATGATAATCAAGTAGATTGGAAAATGGATCAAATGATTCCAGCACCTCATGTCCCAAGAATTAATGGTGAGATTCCTCCAATTGATGAAGTAACTTCAGATCATCAAAGGTTGCTGGATAGGTTGAAGGTATATGATTTTGTTGAACGCAAGGTTAAAGGTGATGGTAATTGTCAGTTCCGTGCTTTATCAGATCAACTATTTGGAACATCTGATCGCCACAAGATGGTGAGAGAAAATGTTGTGAATCAGCTCAAATCACATCGGGAGATTTATGAGGGATATGTTCCCATGGCATATGATGATTATTTGGAAAAGATGTCCATGAGTGGTGAGTGGGGTGATCATGTAACACTACAGGCAGCTGCTGATTGGAATGAAGTTGCTAGATTGATTGAAAATGTAAAAGTCCATATCCTTCTCATGTCTTATAAAAATTTTGACCATTCACACCCTCCACCCTCCAACGAAGACTATGAGTGGGAGTATGGCGTTAAAATATTTGTTATGACTTCTTTTAAGGAAACCTGTTGTATAGAGATTCTCCCTAATTTTCAGAAGAAAAAGCAAGATGGACTGCAAATGTGCATCTGTTTTTTCCCTACCGCAGAACTCATGCACTGTTTTCCAGTTCTTTTTTGTCTCATTTATCGTATACCGAGTACTGCGAGATCATTTTCTCTTGCGAATGAACCCAAAACCATCCCTTTTATACCAAAAAGGGGCAGTTCAAACATTCACTCCGTCGACTTCTCTCCTCCTTTTGTAATCTACCATATTTTTCTATTAATCAATGGAACATTTCAATCACTTGTATGTACTTTTGTTTGCAAAGAACTTCACATATCGTCTTTTGTGCAACATGCAGTTATTTTCCTGAGCTTTTGGGCAGAGGTGCATTACAATTCAATCTATCCTCAAGGAGGTAATTATTTTACTCCATCTATAGTGAACCTAAAGTTTCCCGATGTGTTTCCTCAGTTCCAGATGAGCAATCAAATGACTCTAGAAAGAGGAGGAAATGGTGGATTTTCGGAAATAAGCATTAAGACTCCGAGCAAAAGGTGCAATAAGAACATTCATACAGACTTCGACGACTGGACTTCAATTTTTGATATTAATGCAAATCCTTCAAGCCTTCTTGCGCTTCAGAGAAGTGCAAATTCAGCCTCTTATGCATCAGTTCTCATTCCACCATCTTCATCTCCTTTTCCATCTTCTTCCTATTCTCCATTGGGATCGTTTTCATTCGAGTATTAG

Protein sequence

MEVRDFKGLWWRNYPYFSSCYEKMVMNDFDSDAIRWGLRFFNGDSNGDLSYSTEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPCQASKFGLGWNNRSSRNYSSENDSVEDDVETMEPSSSCSSPGQEDNYYPYGHDNQVDWKMDQMIPAPHVPRINGEIPPIDEVTSDHQRLLDRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKMVRENVVNQLKSHREIYEGYVPMAYDDYLEKMSMSGEWGDHVTLQAAADWNEVARLIENVKVHILLMSYKNFDHSHPPPSNEDYEWEYGVKIFVMTSFKETCCIEILPNFQKKKQDGLQMCICFFPTAELMHCFPVLFCLIYRIPSTARSFSLANEPKTIPFIPKRGSSNIHSVDFSPPFVIYHIFLLINGTFQSLVCTFVCKELHISSFVQHAVIFLSFWAEVHYNSIYPQGGNYFTPSIVNLKFPDVFPQFQMSNQMTLERGGNGGFSEISIKTPSKRCNKNIHTDFDDWTSIFDINANPSSLLALQRSANSASYASVLIPPSSSPFPSSSYSPLGSFSFEY

Homology

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BLAST of Clc04G09550 vs. NCBI nr
Match: XP_038882899.1 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 12-like isoform X3 [Benincasa hispida])

HSP 1 Score: 568.9 bits (1465), Expect = 4.9e-158
Identity = 286/360 (79.44%), Postives = 294/360 (81.67%), Query Frame = 0


Query: 26  MNDFDSDAIRWGLRFFNGDSNGDLSYSTEYFPDMAQHDVNFYEHYYGNHCNNEVNHVEND 85
           MND+DSDAIRWGLRFFNGDSNGDLSYSTEYFPDMAQHDVNFYEHYYGNH NNEVNHVEND
Sbjct: 1   MNDYDSDAIRWGLRFFNGDSNGDLSYSTEYFPDMAQHDVNFYEHYYGNHSNNEVNHVEND 60

Query: 86  EIIAHTLQEEFSQLEIAEASGYSNVEDPCQASKFGLGWNNRSSRNYSSENDSVEDDVETM 145
           EIIA TLQEEFSQLE+AEASGYSNVEDP QASKF LGWNN SSRNY+SENDSVED++ET+
Sbjct: 61  EIIARTLQEEFSQLEMAEASGYSNVEDPSQASKFALGWNNPSSRNYTSENDSVEDEIETV 120

Query: 146 EPSSSCSSPGQEDNYYPYGHDNQVDWKMDQMIPAPHVPRINGEIPPIDEVTSDHQRLLDR 205
           EPSSSCSSPGQEDNYYP GHDNQVDWKMDQMIPAPHVPRINGEIPPIDEVTSDHQRLLDR
Sbjct: 121 EPSSSCSSPGQEDNYYPNGHDNQVDWKMDQMIPAPHVPRINGEIPPIDEVTSDHQRLLDR 180

Query: 206 LKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKMVRENVVNQLKSHREIYEGYVPMAYD 265
           LKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKMVRENVVNQLKSHREIYEGYVPMAYD
Sbjct: 181 LKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKMVRENVVNQLKSHREIYEGYVPMAYD 240

Query: 266 DYLEKMSMSGEWGDHVTLQAAADWNEVARLIENVKVHILLMSYKNFDHSHPPPSNEDYEW 325
           DYLEKMSM+GEWGDHVTLQAAADW                                    
Sbjct: 241 DYLEKMSMNGEWGDHVTLQAAADW------------------------------------ 300

Query: 326 EYGVKIFVMTSFKETCCIEILPNFQKKKQDGLQMCICFFPTAELMHCFPVLFCLIYRIPS 385
            YGVKIFVMTSFK+TCCIEILPNFQKKKQ             E MHCF   F      PS
Sbjct: 301 -YGVKIFVMTSFKDTCCIEILPNFQKKKQ-------------EFMHCFSSSFWSHLSYPS 310

[Close]

BLAST of Clc04G09550 vs. NCBI nr
Match: XP_038882898.1 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 12-like isoform X2 [Benincasa hispida])

HSP 1 Score: 565.8 bits (1457), Expect = 4.2e-157
Identity = 278/329 (84.50%), Postives = 286/329 (86.93%), Query Frame = 0


Query: 26  MNDFDSDAIRWGLRFFNGDSNGDLSYSTEYFPDMAQHDVNFYEHYYGNHCNNEVNHVEND 85
           MND+DSDAIRWGLRFFNGDSNGDLSYSTEYFPDMAQHDVNFYEHYYGNH NNEVNHVEND
Sbjct: 1   MNDYDSDAIRWGLRFFNGDSNGDLSYSTEYFPDMAQHDVNFYEHYYGNHSNNEVNHVEND 60

Query: 86  EIIAHTLQEEFSQLEIAEASGYSNVEDPCQASKFGLGWNNRSSRNYSSENDSVEDDVETM 145
           EIIA TLQEEFSQLE+AEASGYSNVEDP QASKF LGWNN SSRNY+SENDSVED++ET+
Sbjct: 61  EIIARTLQEEFSQLEMAEASGYSNVEDPSQASKFALGWNNPSSRNYTSENDSVEDEIETV 120

Query: 146 EPSSSCSSPGQEDNYYPYGHDNQVDWKMDQMIPAPHVPRINGEIPPIDEVTSDHQRLLDR 205
           EPSSSCSSPGQEDNYYP GHDNQVDWKMDQMIPAPHVPRINGEIPPIDEVTSDHQRLLDR
Sbjct: 121 EPSSSCSSPGQEDNYYPNGHDNQVDWKMDQMIPAPHVPRINGEIPPIDEVTSDHQRLLDR 180

Query: 206 LKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKMVRENVVNQLKSHREIYEGYVPMAYD 265
           LKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKMVRENVVNQLKSHREIYEGYVPMAYD
Sbjct: 181 LKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKMVRENVVNQLKSHREIYEGYVPMAYD 240

Query: 266 DYLEKMSMSGEWGDHVTLQAAADWNEVARLIENVKVHILLMSYKNFDHSHPPPSNEDYEW 325
           DYLEKMSM+GEWGDHVTLQAAADW                                    
Sbjct: 241 DYLEKMSMNGEWGDHVTLQAAADW------------------------------------ 292

Query: 326 EYGVKIFVMTSFKETCCIEILPNFQKKKQ 355
            YGVKIFVMTSFK+TCCIEILPNFQKKKQ
Sbjct: 301 -YGVKIFVMTSFKDTCCIEILPNFQKKKQ 292

[Close]

BLAST of Clc04G09550 vs. NCBI nr
Match: XP_038882896.1 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 10-like isoform X1 [Benincasa hispida] >XP_038882897.1 OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 10-like isoform X1 [Benincasa hispida])

HSP 1 Score: 565.8 bits (1457), Expect = 4.2e-157
Identity = 278/329 (84.50%), Postives = 286/329 (86.93%), Query Frame = 0


Query: 26  MNDFDSDAIRWGLRFFNGDSNGDLSYSTEYFPDMAQHDVNFYEHYYGNHCNNEVNHVEND 85
           MND+DSDAIRWGLRFFNGDSNGDLSYSTEYFPDMAQHDVNFYEHYYGNH NNEVNHVEND
Sbjct: 1   MNDYDSDAIRWGLRFFNGDSNGDLSYSTEYFPDMAQHDVNFYEHYYGNHSNNEVNHVEND 60

Query: 86  EIIAHTLQEEFSQLEIAEASGYSNVEDPCQASKFGLGWNNRSSRNYSSENDSVEDDVETM 145
           EIIA TLQEEFSQLE+AEASGYSNVEDP QASKF LGWNN SSRNY+SENDSVED++ET+
Sbjct: 61  EIIARTLQEEFSQLEMAEASGYSNVEDPSQASKFALGWNNPSSRNYTSENDSVEDEIETV 120

Query: 146 EPSSSCSSPGQEDNYYPYGHDNQVDWKMDQMIPAPHVPRINGEIPPIDEVTSDHQRLLDR 205
           EPSSSCSSPGQEDNYYP GHDNQVDWKMDQMIPAPHVPRINGEIPPIDEVTSDHQRLLDR
Sbjct: 121 EPSSSCSSPGQEDNYYPNGHDNQVDWKMDQMIPAPHVPRINGEIPPIDEVTSDHQRLLDR 180

Query: 206 LKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKMVRENVVNQLKSHREIYEGYVPMAYD 265
           LKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKMVRENVVNQLKSHREIYEGYVPMAYD
Sbjct: 181 LKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKMVRENVVNQLKSHREIYEGYVPMAYD 240

Query: 266 DYLEKMSMSGEWGDHVTLQAAADWNEVARLIENVKVHILLMSYKNFDHSHPPPSNEDYEW 325
           DYLEKMSM+GEWGDHVTLQAAADW                                    
Sbjct: 241 DYLEKMSMNGEWGDHVTLQAAADW------------------------------------ 292

Query: 326 EYGVKIFVMTSFKETCCIEILPNFQKKKQ 355
            YGVKIFVMTSFK+TCCIEILPNFQKKKQ
Sbjct: 301 -YGVKIFVMTSFKDTCCIEILPNFQKKKQ 292

[Close]

BLAST of Clc04G09550 vs. NCBI nr
Match: XP_016902883.1 (PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Cucumis melo] >XP_016902884.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 553.1 bits (1424), Expect = 2.8e-153
Identity = 281/368 (76.36%), Postives = 293/368 (79.62%), Query Frame = 0


Query: 24  MVMNDFDSDAIRWGLRFFNGDSNGDLSYSTEYFPDMAQHDVNFYEHYYGNHCNNEVNHVE 83
           MVMND+DSDAIRWGLRFFNGD NGD+ YSTEY P  AQ DVNFYEHYYGNHCNNEVN+VE
Sbjct: 1   MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVE 60

Query: 84  NDEIIAHTLQEEFSQLEIAEASGYSNVEDPCQASKFGLGWNNRSSRNYSSENDSVEDDVE 143
           NDEIIAHTLQEEFSQLEIAEASGYSNVEDP  ASKF LGWNN SSR YSSENDSVED+VE
Sbjct: 61  NDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGWNNPSSRKYSSENDSVEDEVE 120

Query: 144 TMEPSSSCSSPGQEDNYYPYGHDNQVDWKMDQMIPAPHVPRINGEIPPIDEVTSDHQRLL 203
           T+EPSSSCSSPGQEDNYYPYGHDNQVDW+MDQMIPAPHVPRINGEIP IDEVTSDHQRLL
Sbjct: 121 TVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAPHVPRINGEIPSIDEVTSDHQRLL 180

Query: 204 DRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKMVRENVVNQLKSHREIYEGYVPMA 263
           DRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHK+VRENVVNQLKSHREIYEGYVPM 
Sbjct: 181 DRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKLVRENVVNQLKSHREIYEGYVPMP 240

Query: 264 YDDYLEKMSMSGEWGDHVTLQAAADWNEVARLIENVKVHILLMSYKNFDHSHPPPSNEDY 323
           YDDYLEKMSMSGEWGDHVTLQAAADW                                  
Sbjct: 241 YDDYLEKMSMSGEWGDHVTLQAAADW---------------------------------- 300

Query: 324 EWEYGVKIFVMTSFKETCCIEILPNFQKKKQDGLQMCICFFPTAELMHCFPVLFCLIYRI 383
              YGVKIFVMTSFKETCCIEILPNFQKKKQ    + + F+        +P    +    
Sbjct: 301 ---YGVKIFVMTSFKETCCIEILPNFQKKKQ---VIFLSFWAEVHYNSIYPQGVYMFSEQ 328

Query: 384 PSTARSFS 392
            S AR FS
Sbjct: 361 ASPARYFS 328

[Close]

BLAST of Clc04G09550 vs. NCBI nr
Match: KAA0063818.1 (RNA polymerase sigma factor sigF [Cucumis melo var. makuwa])

HSP 1 Score: 553.1 bits (1424), Expect = 2.8e-153
Identity = 281/368 (76.36%), Postives = 293/368 (79.62%), Query Frame = 0


Query: 24  MVMNDFDSDAIRWGLRFFNGDSNGDLSYSTEYFPDMAQHDVNFYEHYYGNHCNNEVNHVE 83
           MVMND+DSDAIRWGLRFFNGD NGD+ YSTEY P  AQ DVNFYEHYYGNHCNNEVN+VE
Sbjct: 1   MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVE 60

Query: 84  NDEIIAHTLQEEFSQLEIAEASGYSNVEDPCQASKFGLGWNNRSSRNYSSENDSVEDDVE 143
           NDEIIAHTLQEEFSQLEIAEASGYSNVEDP  ASKF LGWNN SSR YSSENDSVED+VE
Sbjct: 61  NDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGWNNPSSRKYSSENDSVEDEVE 120

Query: 144 TMEPSSSCSSPGQEDNYYPYGHDNQVDWKMDQMIPAPHVPRINGEIPPIDEVTSDHQRLL 203
           T+EPSSSCSSPGQEDNYYPYGHDNQVDW+MDQMIPAPHVPRINGEIP IDEVTSDHQRLL
Sbjct: 121 TVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAPHVPRINGEIPSIDEVTSDHQRLL 180

Query: 204 DRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKMVRENVVNQLKSHREIYEGYVPMA 263
           DRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHK+VRENVVNQLKSHREIYEGYVPM 
Sbjct: 181 DRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKLVRENVVNQLKSHREIYEGYVPMP 240

Query: 264 YDDYLEKMSMSGEWGDHVTLQAAADWNEVARLIENVKVHILLMSYKNFDHSHPPPSNEDY 323
           YDDYLEKMSMSGEWGDHVTLQAAADW                                  
Sbjct: 241 YDDYLEKMSMSGEWGDHVTLQAAADW---------------------------------- 300

Query: 324 EWEYGVKIFVMTSFKETCCIEILPNFQKKKQDGLQMCICFFPTAELMHCFPVLFCLIYRI 383
              YGVKIFVMTSFKETCCIEILPNFQKKKQ    + + F+        +P    +    
Sbjct: 301 ---YGVKIFVMTSFKETCCIEILPNFQKKKQ---VIFLSFWAEVHYNSIYPQGVYMFSEQ 328

Query: 384 PSTARSFS 392
            S AR FS
Sbjct: 361 ASPARYFS 328

[Close]

BLAST of Clc04G09550 vs. ExPASy Swiss-Prot
Match: Q9LZF7 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 10 OS=Arabidopsis thaliana OX=3702 GN=OTU10 PE=1 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 5.5e-59
Identity = 136/306 (44.44%), Postives = 178/306 (58.17%), Query Frame = 0


Query: 70  YYGNHCNNEVNHVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPCQ-----------ASK 129
           YY  + ++  + V+NDEIIA TLQ++F QLEIAE++ YS+     Q            + 
Sbjct: 50  YYREYEDHRSSDVDNDEIIARTLQDDFLQLEIAESNDYSHQNQQQQHQQEGYTNNYSNNN 109

Query: 130 FGLGWNNRS-SRNYSSENDSVEDDVETMEPSS----SCSSPGQEDNYYPYGHDNQVD--- 189
            G  WN++S + +YSSE    ++D +     S    SCSSP   D Y      +Q D   
Sbjct: 110 NGYAWNDQSPAVDYSSEWIGNDNDQDGRSDDSVNVFSCSSPSDTDEYVYSWESDQCDADG 169

Query: 190 ---WKMDQMIPAPHVPRINGEIPPIDEVTSDHQRLLDRLKVYDFVERKVKGDGNCQFRAL 249
               +++QM+P P++P+INGEIPP +E  SDH+RL +RL+++DF E KV GDGNCQFRAL
Sbjct: 170 EFGRRLNQMVPIPYIPKINGEIPPEEEAVSDHERLRNRLEMFDFTEVKVPGDGNCQFRAL 229

Query: 250 SDQLFGTSDRHKMVRENVVNQLKSHREIYEGYVPMAYDDYLEKMSMSGEWGDHVTLQAAA 309
           +DQL+ T+DRHK VR  +V QLKS  + Y+GYVPM + DYL KMS SGEWGDHVTLQAAA
Sbjct: 230 ADQLYKTADRHKHVRRQIVKQLKSRPDSYQGYVPMDFSDYLRKMSRSGEWGDHVTLQAAA 289

Query: 310 DWNEVARLIENVKVHILLMSYKNFDHSHPPPSNEDYEWEYGVKIFVMTSFKETCCIEILP 354
           D                                      Y VKI V+TSFK+TC IEILP
Sbjct: 290 D-------------------------------------AYRVKIVVLTSFKDTCYIEILP 318

[Close]

BLAST of Clc04G09550 vs. ExPASy Swiss-Prot
Match: Q8LBW2 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 9 OS=Arabidopsis thaliana OX=3702 GN=OTU9 PE=1 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 3.2e-51
Identity = 137/370 (37.03%), Postives = 190/370 (51.35%), Query Frame = 0


Query: 30  DSDAIRWGLRFFNG---DSNGDLSYSTEYFPDMAQHDVNFYEHYYGNHCNNEV-NHVEND 89
           D DA+RWGL         + G  S  T Y     +      + Y     N  V  +V+ND
Sbjct: 6   DPDALRWGLHDLEVCTLTNAGSCSSVTRY-----ESGGGGTQGYVREGYNQPVTGYVDND 65

Query: 90  EIIAHTLQEEFSQLEIAEASGYSNVEDPCQASKFGLGW--------NNRSSRNYSSENDS 149
            +IA   Q+E S++  AEASG +++      S     W        N   + + + E+D 
Sbjct: 66  AVIAQFYQDELSRVARAEASGINSLS---PTSVVAQDWPHPHQGQENQGEAIDITQESDI 125

Query: 150 VEDDVETMEPSSSC--------SSPGQEDNYYPYGHDNQVDW-----KMDQMIPAPHVPR 209
           + +    ME  +          SSP ++D+        +  W     +++QMIP  HVP+
Sbjct: 126 LHNHNGNMEDKNVARIRFEGGQSSPSRDDDSVCSVEIEEESWSEVGKRLNQMIPIAHVPK 185

Query: 210 INGEIPPIDEVTSDHQRLLDRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKMVREN 269
           INGE+P  DE  SDH+RL  RL++Y  VE K++GDGNCQFR+LSDQL+ + + H  VRE 
Sbjct: 186 INGELPSEDEQISDHERLFQRLQLYGLVENKIEGDGNCQFRSLSDQLYRSPEHHNFVREQ 245

Query: 270 VVNQLKSHREIYEGYVPMAYDDYLEKMSMSGEWGDHVTLQAAADWNEVARLIENVKVHIL 329
           VVNQL  +REIYEGYVPMAY+DYL+ M  +GEWGDHVTLQAAAD                
Sbjct: 246 VVNQLAYNREIYEGYVPMAYNDYLKAMKRNGEWGDHVTLQAAADL--------------- 305

Query: 330 LMSYKNFDHSHPPPSNEDYEWEYGVKIFVMTSFKETCCIEILPNFQKKKQDGLQMCICFF 375
                                 +GV++FV+TSFK+TC IEILP+FQK  +    +C+ F+
Sbjct: 306 ----------------------FGVRMFVITSFKDTCYIEILPHFQKSNR---LICLSFW 327

[Close]

BLAST of Clc04G09550 vs. ExPASy Swiss-Prot
Match: Q9SGA5 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 12 OS=Arabidopsis thaliana OX=3702 GN=OTU12 PE=2 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 2.2e-39
Identity = 94/230 (40.87%), Postives = 121/230 (52.61%), Query Frame = 0


Query: 124 NNRSSRNYSSENDSVEDDVETMEPSSSCSSPGQEDNYYPYGHDNQVDWKMDQMIPAPHVP 183
           ++ SS ++SS+ D+ +D +     S   S             D  V  ++  + P PHVP
Sbjct: 3   DSSSSTSWSSKKDTEDDRMIAFMLSEEYSK-----------LDGAVGRRLSNLAPVPHVP 62

Query: 184 RINGEIPPIDEVTSDHQRLLDRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKMVRE 243
           RIN  IP +++ T DHQRLL RL VY   E KV GDGNCQFRALSDQL+ + + HK VR 
Sbjct: 63  RINCYIPNLNDATLDHQRLLQRLNVYGLCELKVSGDGNCQFRALSDQLYRSPEYHKQVRR 122

Query: 244 NVVNQLKSHREIYEGYVPMAYDDYLEKMSMSGEWGDHVTLQAAADWNEVARLIENVKVHI 303
            VV QLK  R +YE YVPM Y  Y +KM   GEWGDH+TLQAAAD               
Sbjct: 123 EVVKQLKECRSMYESYVPMKYKRYYKKMGKFGEWGDHITLQAAAD--------------- 182

Query: 304 LLMSYKNFDHSHPPPSNEDYEWEYGVKIFVMTSFKETCCIEILPNFQKKK 354
                                  +  KI ++TSF++TC IEI+P +Q  K
Sbjct: 183 ----------------------RFAAKICLLTSFRDTCFIEIIPQYQAPK 184

[Close]

BLAST of Clc04G09550 vs. ExPASy Swiss-Prot
Match: Q0V869 (OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 11 OS=Arabidopsis thaliana OX=3702 GN=OTU11 PE=2 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.5e-32
Identity = 83/222 (37.39%), Postives = 112/222 (50.45%), Query Frame = 0


Query: 127 SSRNYSSENDSVEDDVETMEPSSSCSSPGQEDNYYPYGHDNQVDWKMDQMIPAPHVPRIN 186
           S    +S N S    V   +   + +    ED       + ++  ++  +   PH PR+N
Sbjct: 19  SGSTSASSNSSFSSSVADTDDDQTIARILAEDE--SLRREGKLGKRLSHLDSIPHTPRVN 78

Query: 187 GEIPPIDEVTSDHQRLLDRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKMVRENVV 246
            EIP I++ T DH+ L  RL  Y   E +++GDGNCQFRAL+DQLF  +D HK VR++VV
Sbjct: 79  REIPDINDATLDHELLSGRLATYGLAELQMEGDGNCQFRALADQLFRNADYHKHVRKHVV 138

Query: 247 NQLKSHREIYEGYVPMAYDDYLEKMSMSGEWGDHVTLQAAADWNEVARLIENVKVHILLM 306
            QLK  R++YE YVPM Y  Y  KM   GEWGDHVTLQAAAD                  
Sbjct: 139 KQLKQQRKLYEEYVPMKYRHYTRKMKKHGEWGDHVTLQAAAD------------------ 198

Query: 307 SYKNFDHSHPPPSNEDYEWEYGVKIFVMTSFKETCCIEILPN 349
                               +  KI ++TSF++   IEILP+
Sbjct: 199 -------------------RFEAKICLVTSFRDQSYIEILPH 201

[Close]

BLAST of Clc04G09550 vs. ExPASy Swiss-Prot
Match: Q54P70 (OTU domain-containing protein DDB_G0284757 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0284757 PE=4 SV=2)

HSP 1 Score: 77.8 bits (190), Expect = 4.5e-13
Identity = 43/109 (39.45%), Postives = 62/109 (56.88%), Query Frame = 0


Query: 189 IPPIDEVTSDHQRLLDRLKVYDFVERK-VKGDGNCQFRALSDQLFGTSDRHKMVRENVVN 248
           +P   EV    QRL +RL++Y     K + GDGNCQ  ALSDQL+G     + VR+ +V+
Sbjct: 608 LPQSKEVQIAQQRLNERLELYMLKNSKEIPGDGNCQMHALSDQLYGDLSHSQEVRKTIVD 667

Query: 249 QLKSHRE--------IYEGYVPMAYDDYLEKMSMSGEWGDHVTLQAAAD 289
            L+ +++        I +      +DDY   MS +G WGDH+TL AAA+
Sbjct: 668 WLRKNKDFQLPNGATICQFVNTNNWDDYCNDMSKNGNWGDHLTLLAAAE 716

[Close]

BLAST of Clc04G09550 vs. ExPASy TrEMBL
Match: A0A0A0KIE6 (OTU domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G446380 PE=4 SV=1)

HSP 1 Score: 578.2 bits (1489), Expect = 3.9e-161
Identity = 293/369 (79.40%), Postives = 302/369 (81.84%), Query Frame = 0


Query: 19  SCYEKMVMNDFDSDAIRWGLRFF----NGDSNGDLSYSTEYFPDMAQHDVNFYEHYYGNH 78
           SCYEKMVMND+DSDAIRWGLRFF    NGDSNGD+ YSTEY PD AQHDVNFYEHYYGN+
Sbjct: 29  SCYEKMVMNDYDSDAIRWGLRFFNGDSNGDSNGDMPYSTEYLPDTAQHDVNFYEHYYGNN 88

Query: 79  CNNEVNHVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPCQASKFGLGWNNRSSRNYSSE 138
            NNEVN+VENDEIIAHTLQEEFSQLEIAEASGYSNVEDP QASKF LGWNN SSRNYSSE
Sbjct: 89  YNNEVNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSQASKFALGWNNPSSRNYSSE 148

Query: 139 NDSVEDDVETMEPSSSCSSPGQEDNYYPYGHDNQVDWKMDQMIPAPHVPRINGEIPPIDE 198
           NDSVED+VET+EPSSSCSSPGQ DNYYPYGHDNQVDW+MDQMIPAPHVPRINGEIP IDE
Sbjct: 149 NDSVEDEVETVEPSSSCSSPGQGDNYYPYGHDNQVDWRMDQMIPAPHVPRINGEIPSIDE 208

Query: 199 VTSDHQRLLDRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKMVRENVVNQLKSHRE 258
           VTSDHQRLLDRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHK+VRENVV+QLKSHRE
Sbjct: 209 VTSDHQRLLDRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKLVRENVVSQLKSHRE 268

Query: 259 IYEGYVPMAYDDYLEKMSMSGEWGDHVTLQAAADWNEVARLIENVKVHILLMSYKNFDHS 318
           IYEGYVPM YDDYLEKMSMSGEWGDHVTLQAAADW                         
Sbjct: 269 IYEGYVPMPYDDYLEKMSMSGEWGDHVTLQAAADW------------------------- 328

Query: 319 HPPPSNEDYEWEYGVKIFVMTSFKETCCIEILPNFQKKKQDGLQMCICFFPTAELMHCFP 378
                       YGVKIFVMTSFKETCCIEILPNFQKKKQ               MHCFP
Sbjct: 329 ------------YGVKIFVMTSFKETCCIEILPNFQKKKQG-------------FMHCFP 347

Query: 379 VLFCLIYRI 384
           VLF LIYRI
Sbjct: 389 VLFGLIYRI 347

[Close]

BLAST of Clc04G09550 vs. ExPASy TrEMBL
Match: A0A1S4E3S8 (RNA polymerase sigma factor sigF, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500810 PE=3 SV=1)

HSP 1 Score: 553.1 bits (1424), Expect = 1.4e-153
Identity = 281/368 (76.36%), Postives = 293/368 (79.62%), Query Frame = 0


Query: 24  MVMNDFDSDAIRWGLRFFNGDSNGDLSYSTEYFPDMAQHDVNFYEHYYGNHCNNEVNHVE 83
           MVMND+DSDAIRWGLRFFNGD NGD+ YSTEY P  AQ DVNFYEHYYGNHCNNEVN+VE
Sbjct: 1   MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVE 60

Query: 84  NDEIIAHTLQEEFSQLEIAEASGYSNVEDPCQASKFGLGWNNRSSRNYSSENDSVEDDVE 143
           NDEIIAHTLQEEFSQLEIAEASGYSNVEDP  ASKF LGWNN SSR YSSENDSVED+VE
Sbjct: 61  NDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGWNNPSSRKYSSENDSVEDEVE 120

Query: 144 TMEPSSSCSSPGQEDNYYPYGHDNQVDWKMDQMIPAPHVPRINGEIPPIDEVTSDHQRLL 203
           T+EPSSSCSSPGQEDNYYPYGHDNQVDW+MDQMIPAPHVPRINGEIP IDEVTSDHQRLL
Sbjct: 121 TVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAPHVPRINGEIPSIDEVTSDHQRLL 180

Query: 204 DRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKMVRENVVNQLKSHREIYEGYVPMA 263
           DRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHK+VRENVVNQLKSHREIYEGYVPM 
Sbjct: 181 DRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKLVRENVVNQLKSHREIYEGYVPMP 240

Query: 264 YDDYLEKMSMSGEWGDHVTLQAAADWNEVARLIENVKVHILLMSYKNFDHSHPPPSNEDY 323
           YDDYLEKMSMSGEWGDHVTLQAAADW                                  
Sbjct: 241 YDDYLEKMSMSGEWGDHVTLQAAADW---------------------------------- 300

Query: 324 EWEYGVKIFVMTSFKETCCIEILPNFQKKKQDGLQMCICFFPTAELMHCFPVLFCLIYRI 383
              YGVKIFVMTSFKETCCIEILPNFQKKKQ    + + F+        +P    +    
Sbjct: 301 ---YGVKIFVMTSFKETCCIEILPNFQKKKQ---VIFLSFWAEVHYNSIYPQGVYMFSEQ 328

Query: 384 PSTARSFS 392
            S AR FS
Sbjct: 361 ASPARYFS 328

[Close]

BLAST of Clc04G09550 vs. ExPASy TrEMBL
Match: A0A5A7V893 (RNA polymerase sigma factor sigF OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00350 PE=3 SV=1)

HSP 1 Score: 553.1 bits (1424), Expect = 1.4e-153
Identity = 281/368 (76.36%), Postives = 293/368 (79.62%), Query Frame = 0


Query: 24  MVMNDFDSDAIRWGLRFFNGDSNGDLSYSTEYFPDMAQHDVNFYEHYYGNHCNNEVNHVE 83
           MVMND+DSDAIRWGLRFFNGD NGD+ YSTEY P  AQ DVNFYEHYYGNHCNNEVN+VE
Sbjct: 1   MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVE 60

Query: 84  NDEIIAHTLQEEFSQLEIAEASGYSNVEDPCQASKFGLGWNNRSSRNYSSENDSVEDDVE 143
           NDEIIAHTLQEEFSQLEIAEASGYSNVEDP  ASKF LGWNN SSR YSSENDSVED+VE
Sbjct: 61  NDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGWNNPSSRKYSSENDSVEDEVE 120

Query: 144 TMEPSSSCSSPGQEDNYYPYGHDNQVDWKMDQMIPAPHVPRINGEIPPIDEVTSDHQRLL 203
           T+EPSSSCSSPGQEDNYYPYGHDNQVDW+MDQMIPAPHVPRINGEIP IDEVTSDHQRLL
Sbjct: 121 TVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAPHVPRINGEIPSIDEVTSDHQRLL 180

Query: 204 DRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKMVRENVVNQLKSHREIYEGYVPMA 263
           DRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHK+VRENVVNQLKSHREIYEGYVPM 
Sbjct: 181 DRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKLVRENVVNQLKSHREIYEGYVPMP 240

Query: 264 YDDYLEKMSMSGEWGDHVTLQAAADWNEVARLIENVKVHILLMSYKNFDHSHPPPSNEDY 323
           YDDYLEKMSMSGEWGDHVTLQAAADW                                  
Sbjct: 241 YDDYLEKMSMSGEWGDHVTLQAAADW---------------------------------- 300

Query: 324 EWEYGVKIFVMTSFKETCCIEILPNFQKKKQDGLQMCICFFPTAELMHCFPVLFCLIYRI 383
              YGVKIFVMTSFKETCCIEILPNFQKKKQ    + + F+        +P    +    
Sbjct: 301 ---YGVKIFVMTSFKETCCIEILPNFQKKKQ---VIFLSFWAEVHYNSIYPQGVYMFSEQ 328

Query: 384 PSTARSFS 392
            S AR FS
Sbjct: 361 ASPARYFS 328

[Close]

BLAST of Clc04G09550 vs. ExPASy TrEMBL
Match: A0A1S4E4I4 (RNA polymerase sigma factor sigF, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500810 PE=3 SV=1)

HSP 1 Score: 544.3 bits (1401), Expect = 6.3e-151
Identity = 278/368 (75.54%), Postives = 291/368 (79.08%), Query Frame = 0


Query: 24  MVMNDFDSDAIRWGLRFFNGDSNGDLSYSTEYFPDMAQHDVNFYEHYYGNHCNNEVNHVE 83
           MVMND+DSDAIRWGLRFFNGD NGD+ YSTEY P  AQ DVNFYEHYYGNHCNNEVN+VE
Sbjct: 1   MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVE 60

Query: 84  NDEIIAHTLQEEFSQLEIAEASGYSNVEDPCQASKFGLGWNNRSSRNYSSENDSVEDDVE 143
           NDEIIAHTLQEEFSQLEIAEASGYSNVEDP  ASKF LGWNN SSR Y  +NDSVED+VE
Sbjct: 61  NDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGWNNPSSRKY--KNDSVEDEVE 120

Query: 144 TMEPSSSCSSPGQEDNYYPYGHDNQVDWKMDQMIPAPHVPRINGEIPPIDEVTSDHQRLL 203
           T+EPSSSCSSPGQEDNYYPYGHDNQVDW+MDQMIPAPHVPRINGEIP IDEVTSDHQRLL
Sbjct: 121 TVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAPHVPRINGEIPSIDEVTSDHQRLL 180

Query: 204 DRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKMVRENVVNQLKSHREIYEGYVPMA 263
           DRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHK+VRENVVNQLKSHREIYEGYVPM 
Sbjct: 181 DRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKLVRENVVNQLKSHREIYEGYVPMP 240

Query: 264 YDDYLEKMSMSGEWGDHVTLQAAADWNEVARLIENVKVHILLMSYKNFDHSHPPPSNEDY 323
           YDDYLEKMSMSGEWGDHVTLQAAADW                                  
Sbjct: 241 YDDYLEKMSMSGEWGDHVTLQAAADW---------------------------------- 300

Query: 324 EWEYGVKIFVMTSFKETCCIEILPNFQKKKQDGLQMCICFFPTAELMHCFPVLFCLIYRI 383
              YGVKIFVMTSFKETCCIEILPNFQKKKQ    + + F+        +P    +    
Sbjct: 301 ---YGVKIFVMTSFKETCCIEILPNFQKKKQ---VIFLSFWAEVHYNSIYPQGVYMFSEQ 326

Query: 384 PSTARSFS 392
            S AR FS
Sbjct: 361 ASPARYFS 326

[Close]

BLAST of Clc04G09550 vs. ExPASy TrEMBL
Match: A0A5D3C7T8 (RNA polymerase sigma factor sigF OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00180 PE=4 SV=1)

HSP 1 Score: 539.3 bits (1388), Expect = 2.0e-149
Identity = 299/504 (59.33%), Postives = 306/504 (60.71%), Query Frame = 0


Query: 19  SCYEKMVMNDFDSDAIRWGLRFFNGDSNGDLSYSTEYFPDMAQHDVNFYEHYYGNHCNNE 78
           SCYEKMVMND+DSDAIRWGLRFFNGD NGD+ YSTEY P  AQ DVNFYEHYYGNHCNNE
Sbjct: 22  SCYEKMVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNE 81

Query: 79  VNHVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPCQASKFGLGWNNRSSRNYSSENDSV 138
           VN+VENDEIIAHTLQEEFSQLEIAEASGYSNVEDP  ASKF LGWNN SSR YSSENDSV
Sbjct: 82  VNNVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGWNNPSSRKYSSENDSV 141

Query: 139 EDDVETMEPSSSCSSPGQEDNYYPYGHDNQVDWKMDQMIPAP----------------HV 198
           ED+VET+EPSSSCSSPGQEDNYYPYGHDNQVDW+MDQMIPAP                HV
Sbjct: 142 EDEVETVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAPVRFSIIASFYVGTAVEHV 201

Query: 199 PRINGEIPPIDEVTSDHQRLLD---------------------------------RLKVY 258
           PRINGEIP IDEVTSDHQRLLD                                 RLKVY
Sbjct: 202 PRINGEIPSIDEVTSDHQRLLDSLLFGVFSLRARLLFDIEFWVPIITTVHCLFNLRLKVY 261

Query: 259 DFVERKVKGDGNCQFRALSDQLFGTSDRHKMVRENVVNQLKSHREIYEGYVPMAYDDYLE 318
           DFVERKVKGDGNCQFRALSDQLFGTSDRHK+VRENVVNQLKSHREIYEGYVPM YDDYLE
Sbjct: 262 DFVERKVKGDGNCQFRALSDQLFGTSDRHKLVRENVVNQLKSHREIYEGYVPMPYDDYLE 321

Query: 319 KMSMSGEWGDHVTLQAAADWNEVARLIENVKVHILLMSYKNFDHSHPPPSNEDYEWEYGV 378
           KMSMSGEWGDHVTLQAAADW                                     YGV
Sbjct: 322 KMSMSGEWGDHVTLQAAADW-------------------------------------YGV 381

Query: 379 KIFVMTSFKETCCIEILPNFQKKKQDGLQMCICFFPTAELMHCFPVLFCLIYRIPSTARS 438
           KIFVMTSFKETCCIEILPNFQKKKQ                                   
Sbjct: 382 KIFVMTSFKETCCIEILPNFQKKKQ----------------------------------- 389

Query: 439 FSLANEPKTIPFIPKRGSSNIHSVDFSPPFVIYHIFLLINGTFQSLVCTFVCKELHISSF 474
                                                                       
Sbjct: 442 ------------------------------------------------------------ 389

[Close]

BLAST of Clc04G09550 vs. TAIR 10
Match: AT5G03330.1 (Cysteine proteinases superfamily protein )

HSP 1 Score: 230.3 bits (586), Expect = 3.9e-60
Identity = 136/306 (44.44%), Postives = 178/306 (58.17%), Query Frame = 0


Query: 70  YYGNHCNNEVNHVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPCQ-----------ASK 129
           YY  + ++  + V+NDEIIA TLQ++F QLEIAE++ YS+     Q            + 
Sbjct: 50  YYREYEDHRSSDVDNDEIIARTLQDDFLQLEIAESNDYSHQNQQQQHQQEGYTNNYSNNN 109

Query: 130 FGLGWNNRS-SRNYSSENDSVEDDVETMEPSS----SCSSPGQEDNYYPYGHDNQVD--- 189
            G  WN++S + +YSSE    ++D +     S    SCSSP   D Y      +Q D   
Sbjct: 110 NGYAWNDQSPAVDYSSEWIGNDNDQDGRSDDSVNVFSCSSPSDTDEYVYSWESDQCDADG 169

Query: 190 ---WKMDQMIPAPHVPRINGEIPPIDEVTSDHQRLLDRLKVYDFVERKVKGDGNCQFRAL 249
               +++QM+P P++P+INGEIPP +E  SDH+RL +RL+++DF E KV GDGNCQFRAL
Sbjct: 170 EFGRRLNQMVPIPYIPKINGEIPPEEEAVSDHERLRNRLEMFDFTEVKVPGDGNCQFRAL 229

Query: 250 SDQLFGTSDRHKMVRENVVNQLKSHREIYEGYVPMAYDDYLEKMSMSGEWGDHVTLQAAA 309
           +DQL+ T+DRHK VR  +V QLKS  + Y+GYVPM + DYL KMS SGEWGDHVTLQAAA
Sbjct: 230 ADQLYKTADRHKHVRRQIVKQLKSRPDSYQGYVPMDFSDYLRKMSRSGEWGDHVTLQAAA 289

Query: 310 DWNEVARLIENVKVHILLMSYKNFDHSHPPPSNEDYEWEYGVKIFVMTSFKETCCIEILP 354
           D                                      Y VKI V+TSFK+TC IEILP
Sbjct: 290 D-------------------------------------AYRVKIVVLTSFKDTCYIEILP 318

[Close]

BLAST of Clc04G09550 vs. TAIR 10
Match: AT5G03330.2 (Cysteine proteinases superfamily protein )

HSP 1 Score: 230.3 bits (586), Expect = 3.9e-60
Identity = 136/306 (44.44%), Postives = 178/306 (58.17%), Query Frame = 0


Query: 70  YYGNHCNNEVNHVENDEIIAHTLQEEFSQLEIAEASGYSNVEDPCQ-----------ASK 129
           YY  + ++  + V+NDEIIA TLQ++F QLEIAE++ YS+     Q            + 
Sbjct: 50  YYREYEDHRSSDVDNDEIIARTLQDDFLQLEIAESNDYSHQNQQQQHQQEGYTNNYSNNN 109

Query: 130 FGLGWNNRS-SRNYSSENDSVEDDVETMEPSS----SCSSPGQEDNYYPYGHDNQVD--- 189
            G  WN++S + +YSSE    ++D +     S    SCSSP   D Y      +Q D   
Sbjct: 110 NGYAWNDQSPAVDYSSEWIGNDNDQDGRSDDSVNVFSCSSPSDTDEYVYSWESDQCDADG 169

Query: 190 ---WKMDQMIPAPHVPRINGEIPPIDEVTSDHQRLLDRLKVYDFVERKVKGDGNCQFRAL 249
               +++QM+P P++P+INGEIPP +E  SDH+RL +RL+++DF E KV GDGNCQFRAL
Sbjct: 170 EFGRRLNQMVPIPYIPKINGEIPPEEEAVSDHERLRNRLEMFDFTEVKVPGDGNCQFRAL 229

Query: 250 SDQLFGTSDRHKMVRENVVNQLKSHREIYEGYVPMAYDDYLEKMSMSGEWGDHVTLQAAA 309
           +DQL+ T+DRHK VR  +V QLKS  + Y+GYVPM + DYL KMS SGEWGDHVTLQAAA
Sbjct: 230 ADQLYKTADRHKHVRRQIVKQLKSRPDSYQGYVPMDFSDYLRKMSRSGEWGDHVTLQAAA 289

Query: 310 DWNEVARLIENVKVHILLMSYKNFDHSHPPPSNEDYEWEYGVKIFVMTSFKETCCIEILP 354
           D                                      Y VKI V+TSFK+TC IEILP
Sbjct: 290 D-------------------------------------AYRVKIVVLTSFKDTCYIEILP 318

[Close]

BLAST of Clc04G09550 vs. TAIR 10
Match: AT5G04250.1 (Cysteine proteinases superfamily protein )

HSP 1 Score: 204.5 bits (519), Expect = 2.3e-52
Identity = 137/370 (37.03%), Postives = 190/370 (51.35%), Query Frame = 0


Query: 30  DSDAIRWGLRFFNG---DSNGDLSYSTEYFPDMAQHDVNFYEHYYGNHCNNEV-NHVEND 89
           D DA+RWGL         + G  S  T Y     +      + Y     N  V  +V+ND
Sbjct: 6   DPDALRWGLHDLEVCTLTNAGSCSSVTRY-----ESGGGGTQGYVREGYNQPVTGYVDND 65

Query: 90  EIIAHTLQEEFSQLEIAEASGYSNVEDPCQASKFGLGW--------NNRSSRNYSSENDS 149
            +IA   Q+E S++  AEASG +++      S     W        N   + + + E+D 
Sbjct: 66  AVIAQFYQDELSRVARAEASGINSLS---PTSVVAQDWPHPHQGQENQGEAIDITQESDI 125

Query: 150 VEDDVETMEPSSSC--------SSPGQEDNYYPYGHDNQVDW-----KMDQMIPAPHVPR 209
           + +    ME  +          SSP ++D+        +  W     +++QMIP  HVP+
Sbjct: 126 LHNHNGNMEDKNVARIRFEGGQSSPSRDDDSVCSVEIEEESWSEVGKRLNQMIPIAHVPK 185

Query: 210 INGEIPPIDEVTSDHQRLLDRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKMVREN 269
           INGE+P  DE  SDH+RL  RL++Y  VE K++GDGNCQFR+LSDQL+ + + H  VRE 
Sbjct: 186 INGELPSEDEQISDHERLFQRLQLYGLVENKIEGDGNCQFRSLSDQLYRSPEHHNFVREQ 245

Query: 270 VVNQLKSHREIYEGYVPMAYDDYLEKMSMSGEWGDHVTLQAAADWNEVARLIENVKVHIL 329
           VVNQL  +REIYEGYVPMAY+DYL+ M  +GEWGDHVTLQAAAD                
Sbjct: 246 VVNQLAYNREIYEGYVPMAYNDYLKAMKRNGEWGDHVTLQAAADL--------------- 305

Query: 330 LMSYKNFDHSHPPPSNEDYEWEYGVKIFVMTSFKETCCIEILPNFQKKKQDGLQMCICFF 375
                                 +GV++FV+TSFK+TC IEILP+FQK  +    +C+ F+
Sbjct: 306 ----------------------FGVRMFVITSFKDTCYIEILPHFQKSNR---LICLSFW 327

[Close]

BLAST of Clc04G09550 vs. TAIR 10
Match: AT5G04250.2 (Cysteine proteinases superfamily protein )

HSP 1 Score: 204.5 bits (519), Expect = 2.3e-52
Identity = 137/370 (37.03%), Postives = 190/370 (51.35%), Query Frame = 0


Query: 30  DSDAIRWGLRFFNG---DSNGDLSYSTEYFPDMAQHDVNFYEHYYGNHCNNEV-NHVEND 89
           D DA+RWGL         + G  S  T Y     +      + Y     N  V  +V+ND
Sbjct: 6   DPDALRWGLHDLEVCTLTNAGSCSSVTRY-----ESGGGGTQGYVREGYNQPVTGYVDND 65

Query: 90  EIIAHTLQEEFSQLEIAEASGYSNVEDPCQASKFGLGW--------NNRSSRNYSSENDS 149
            +IA   Q+E S++  AEASG +++      S     W        N   + + + E+D 
Sbjct: 66  AVIAQFYQDELSRVARAEASGINSLS---PTSVVAQDWPHPHQGQENQGEAIDITQESDI 125

Query: 150 VEDDVETMEPSSSC--------SSPGQEDNYYPYGHDNQVDW-----KMDQMIPAPHVPR 209
           + +    ME  +          SSP ++D+        +  W     +++QMIP  HVP+
Sbjct: 126 LHNHNGNMEDKNVARIRFEGGQSSPSRDDDSVCSVEIEEESWSEVGKRLNQMIPIAHVPK 185

Query: 210 INGEIPPIDEVTSDHQRLLDRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKMVREN 269
           INGE+P  DE  SDH+RL  RL++Y  VE K++GDGNCQFR+LSDQL+ + + H  VRE 
Sbjct: 186 INGELPSEDEQISDHERLFQRLQLYGLVENKIEGDGNCQFRSLSDQLYRSPEHHNFVREQ 245

Query: 270 VVNQLKSHREIYEGYVPMAYDDYLEKMSMSGEWGDHVTLQAAADWNEVARLIENVKVHIL 329
           VVNQL  +REIYEGYVPMAY+DYL+ M  +GEWGDHVTLQAAAD                
Sbjct: 246 VVNQLAYNREIYEGYVPMAYNDYLKAMKRNGEWGDHVTLQAAADL--------------- 305

Query: 330 LMSYKNFDHSHPPPSNEDYEWEYGVKIFVMTSFKETCCIEILPNFQKKKQDGLQMCICFF 375
                                 +GV++FV+TSFK+TC IEILP+FQK  +    +C+ F+
Sbjct: 306 ----------------------FGVRMFVITSFKDTCYIEILPHFQKSNR---LICLSFW 327

[Close]

BLAST of Clc04G09550 vs. TAIR 10
Match: AT3G02070.1 (Cysteine proteinases superfamily protein )

HSP 1 Score: 165.2 bits (417), Expect = 1.5e-40
Identity = 94/230 (40.87%), Postives = 121/230 (52.61%), Query Frame = 0


Query: 124 NNRSSRNYSSENDSVEDDVETMEPSSSCSSPGQEDNYYPYGHDNQVDWKMDQMIPAPHVP 183
           ++ SS ++SS+ D+ +D +     S   S             D  V  ++  + P PHVP
Sbjct: 3   DSSSSTSWSSKKDTEDDRMIAFMLSEEYSK-----------LDGAVGRRLSNLAPVPHVP 62

Query: 184 RINGEIPPIDEVTSDHQRLLDRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKMVRE 243
           RIN  IP +++ T DHQRLL RL VY   E KV GDGNCQFRALSDQL+ + + HK VR 
Sbjct: 63  RINCYIPNLNDATLDHQRLLQRLNVYGLCELKVSGDGNCQFRALSDQLYRSPEYHKQVRR 122

Query: 244 NVVNQLKSHREIYEGYVPMAYDDYLEKMSMSGEWGDHVTLQAAADWNEVARLIENVKVHI 303
            VV QLK  R +YE YVPM Y  Y +KM   GEWGDH+TLQAAAD               
Sbjct: 123 EVVKQLKECRSMYESYVPMKYKRYYKKMGKFGEWGDHITLQAAAD--------------- 182

Query: 304 LLMSYKNFDHSHPPPSNEDYEWEYGVKIFVMTSFKETCCIEILPNFQKKK 354
                                  +  KI ++TSF++TC IEI+P +Q  K
Sbjct: 183 ----------------------RFAAKICLLTSFRDTCFIEIIPQYQAPK 184

The following BLAST results are available for this feature:

BLAST of Clc04G09550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882899.1	4.9e-158	79.44	OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 12-like isoform X3 [Beni...	[more]
XP_038882898.1	4.2e-157	84.50	OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 12-like isoform X2 [Beni...	[more]
XP_038882896.1	4.2e-157	84.50	OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 10-like isoform X1 [Beni...	[more]
XP_016902883.1	2.8e-153	76.36	PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Cucumis m...	[more]
KAA0063818.1	2.8e-153	76.36	RNA polymerase sigma factor sigF [Cucumis melo var. makuwa]	[more]

BLAST of Clc04G09550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZF7	5.5e-59	44.44	OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 10 OS=Arabidopsis thalia...	[more]
Q8LBW2	3.2e-51	37.03	OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 9 OS=Arabidopsis thalian...	[more]
Q9SGA5	2.2e-39	40.87	OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 12 OS=Arabidopsis thalia...	[more]
Q0V869	1.5e-32	37.39	OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 11 OS=Arabidopsis thalia...	[more]
Q54P70	4.5e-13	39.45	OTU domain-containing protein DDB_G0284757 OS=Dictyostelium discoideum OX=44689 ...	[more]

BLAST of Clc04G09550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIE6	3.9e-161	79.40	OTU domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G446380 PE=4 SV...	[more]
A0A1S4E3S8	1.4e-153	76.36	RNA polymerase sigma factor sigF, chloroplastic isoform X1 OS=Cucumis melo OX=36...	[more]
A0A5A7V893	1.4e-153	76.36	RNA polymerase sigma factor sigF OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A1S4E4I4	6.3e-151	75.54	RNA polymerase sigma factor sigF, chloroplastic isoform X2 OS=Cucumis melo OX=36...	[more]
A0A5D3C7T8	2.0e-149	59.33	RNA polymerase sigma factor sigF OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of Clc04G09550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G03330.1	3.9e-60	44.44	Cysteine proteinases superfamily protein	[more]
AT5G03330.2	3.9e-60	44.44	Cysteine proteinases superfamily protein	[more]
AT5G04250.1	2.3e-52	37.03	Cysteine proteinases superfamily protein	[more]
AT5G04250.2	2.3e-52	37.03	Cysteine proteinases superfamily protein	[more]
AT3G02070.1	1.5e-40	40.87	Cysteine proteinases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.90.70.80		coord: 193..316 e-value: 8.7E-29 score: 102.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..162
None	No IPR available	PANTHER	PTHR12419	OTU DOMAIN CONTAINING PROTEIN	coord: 448..474 coord: 50..293
None	No IPR available	PANTHER	PTHR12419:SF78	OTU DOMAIN-CONTAINING PROTEIN DDB_G0284757-LIKE ISOFORM X1	coord: 327..364 coord: 448..474 coord: 50..293
None	No IPR available	PANTHER	PTHR12419	OTU DOMAIN CONTAINING PROTEIN	coord: 327..364
IPR003323	OTU domain	PFAM	PF02338	OTU	coord: 217..288 e-value: 3.9E-9 score: 37.1
IPR003323	OTU domain	PROSITE	PS50802	OTU	coord: 211..471 score: 13.765237
IPR038765	Papain-like cysteine peptidase superfamily	SUPERFAMILY	54001	Cysteine proteinases	coord: 198..303

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G09550.2	Clc04G09550.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:2000142	regulation of DNA-templated transcription, initiation
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016987	sigma factor activity