Clc04G08990 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G08990
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	protein MODIFIER OF SNC1 11-like
Location	ClcChr04: 22655570 .. 22659332 (-)
RNA-Seq Expression	Clc04G08990
Synteny	Clc04G08990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATACCACTAAAACGAGATGTCCCAATGAATTTATAAAAGTAACAAAAACAAAAGAAAGAACCAATGAAAAACTAGCACGTATACACAGGACCGGAAAATATCCCTCGTTCTCCTTCTGATAGGAATTTACATTATTAACCCTGCCCTTCTGATCCACGATGTGAAATATCTGACCAGAACCAAAAACGAATAGAAAGCTGTGCCCTCCCTTTCACGCGGCAATTTCCCTTGCAGCTTTCGTGGTTCGCAAGCAGTTCCCGATTAGGTTTCCGGTCTCAAATCTGCTCCTTCAATGGCGACGGTAGCATCTGCAGGACTAAATGACATTAACAATAACAAGAATCCGCTTGGAGAAAACCCTAGTCAAACCCTAGACCCGACGATTTCTTCCTCGGCCCAGACTCCTGCCTCCGTTCCGCCTTCGTCAACTGATGGCGGGTCATCCAAGGAAAGGGATGAATCCAAGGGCTCCGGTAAGGCGTCGGTTGTAGATGATGGTGCACCGGTTTCTGATGTCCAGAGGAAAATGCGCCGCGCCGAGCGTTTTGGGATTTCAGTGCAATTGTCCGAAGAAGAAAAGCGTAATTCTCGAGCAGAACGGTGAGTCTATTTCTTGGTTGTCGGTCTTCGTTGCACGCCTATGCTTGTCCTTGTGTTGTTGCGTGTTTGAATCTATTTCTCTTGGGAGATCATGACATTCTGCATAGTTATTTTCCTATGATTGCTTTGAATCTATATGTTTTTATCTCTTTTTACGGACAAATGTAGTAATAAGTCACTCGTATAAGTATTACATTTCTATCTCATAAACTGCCTGAGTAGGGATTTTAACAAACCCAAAAATTCGTGCAACTCCTGTTATATGTTAGATCGATGAGTTGCTTGTGCAGTTACGAGGTGATTCGGAACTTGTAGGTTATGATTTTCTGGAGCATATCAACTCTGTATCGTTATTTAGTCCGATGTTTAGGTTTTGGTGCCCAATCTAATTGTTCATATTCGAGCGATGACTTGAAATTCTAATTGGAATGATATATGTATATTCGAAACACAAAATGATTGCAGTGGTATATGTCAAATATCATTAATTCACTGTCATATCTGTATTAAAAAAAAAAAGAAGAGGAAAGTTGCAGCCCTTCCTCTCTTTCCTATCCCTTCTCAAGTGAAATTTGGAACGATTTGTTATGCTCTTTAAGTCTTTCTCGGGGCTTCCAGAATTGTGCCTTTCACACAAAGCAGCTAAGCCGTCGTCCTTTCATAATTATGAGAGCTTCGTGGTTTTATCTTGTCTATAGTGTCTTATGGAAGTTTGGTTTGAAAGAGCTACTAGAATCTTCGAAGATAAGTTAAAAAATTGGGATGTTGTGTGGAAATTAATTCTTTTTTTGGGCTCACATTGATATTGGTGTTCTGTCTTCTCGTTTCTATGATTAAATATTCACCTTTTTCTTTCTTTTTCCAAGTTATGGTGAGAACCATGTTTCTCTTTTATTTTCCCGTCAAATATCTTTAATGTTGATTGTTGGGGATGCTTGTAGGTTTGGTATGGGTACTACAACTAATGGATTGGGAGCATCTAATAAGACGGAGGAGGTGAAGAGAAAGGCTAGAGCTGAGAGGTAGTTTCCATTTCTTTATGTGTTGATAGCTTACCCTGTCAAAGAAATTGTATTTATTGTCTTTTACTCATTTAACTTTTCTTTCAAACTTTAGCCCCTCCTTTTTTTTGGTTATTTAGATTTGGACTTTCTGCATCTGTGACTACTGATGATGAGGCAAAGAAGAAAGCTCGTCTTGCTAGGTTTTCATCAACATCAAAGCCAGACCCCCAGGAGGAAGAAAAGAGGAAAGCAAGGGCAATCAGGTAGTGGGCTTGGTTTTTTGTTTCCCTGGTTGTAGCTAATTGAAAAATGCTTCCAGTTCTATCATCTGTGGTTCATGGAGATCTTGTATGGGGTCTATAAACATTAGAATGCATCTAACAAATGCTTTTCCCTTTATTTGCTGGGTGAAGGTTTTCTAATCCAACATCAAACTCTCTCACACAAGTGGAAGGGAAAGGAAATGTTGAGACGGTAATGTTATCCTTTTAAATTTATGTTGCTATCTTGTAGGATTTAGGAAACACTAGTGTGTACTAGTTTCCAATGATCTTGTTCCCATTGATGATTCCTATTGTTTGTAATCAGATTGCAGATGTTGCAGGCAAGGCTGGAGGTGGTGCCTGAAAAGAACATTCCCTTTTGATGGCAAGATAGCTTTTGCTTGTAAATTTGTTTTGTGGTTCGTTTTTCTTTTTCTTTTTCTTTTTAAAGTCTGATTGGCATTCCACCTTCAGAACTTTACATATCTTATCCAAATCTATATTGTTTCTTGTTGTACCTGCGTTATTGAATCTGATGATTGATTTCTTTCTCTGGCAGGTCTAGTATCCTGGTTAGGATTCCCTGTAATGGCTTCCATACCCATGTGCATTCCTTTATAATATTATCTAGTTCAAAAGTCTTCCATTCTGAGGGCAGATTCCATACTGCAAGGTGCTGTACTACGTGCTGCTGTGAGACAAGGTTCCCTAGTTTCAGTTGTATCAGGATATTAGTTCTCTGGTTAGGTGTTATATAGTAGCAAATACCTCCCTATCTTACAAGTTTATTAAAGAATATCAGAAATTTCTGAAGTTTTTAGCCCTCCAATGTTTTGGTTATCATCTTCAGTTTATATCTCCTTTGTGATGACAAGTTGGATGTTCATGATATCATTTGAGCGGCAGTGTTAAGTTTCCATGTGCATTGGTACCATCTGACACTGACTGGTTGAAATTTTCTAATTTGCCAAATTAACCTTCAGGATTAGAAAATTAACGCATCTTGCTTTTCTTTGAGTTAATATCATTAGGTTTTTTCTTATCCAAAAAATATCATTAGATTTTTAGTTTTCTAACTACAATTTAGTTCGAACTTTTAGGTTCCTTTTTAATGATAGGTTTTATTTTGCTGACTGTAATAGTGTAAGACTAATGGCCAACTATCAATGTTAGGAAACTTGCATGTATATCTTTTGCCTTCTTTTTCAGAGACAGATCAATAGTCTGAGCACAGCTAGTTATTATCCAATCACTTACGTTTGAGGTTTGGTCTCTTTGTATGATGCCGGCACGTCTCATCTCATGGCATCACTTAATTACTCATCATGGGAATGACTATTACACTCTTTAGATGCCTAGTTTTTTACTATAACCTGCAGAGCACTTCGATTAGAATGGGTCATGTGTTGAATGTCATTTAGAACTGCCGTTCAAAATGTCATCATGAGATAATAGCTCCAACTTGTGTGAGAATAAACTGAAGATGAGTCTTGGGAGGGGAAGAAATTATCAGTTCCATTGGTAAGTGGTCGCATGGGAGAAGCTGAATTCTCTCTTCTAACTTGGGAGTTTCTGATATTCTTGTTTGGTTATATAGGATAGGCCGCGTCTTTGGAGGTAGATAAATGAGGTAATAGAAGTCAGACTTCTCTGCAGGCCTCATACTCTCTTAGAAGTCTGCATGTATGGAGTTCTGTAGCTGAGAATGGATCGTACTCTACAAATAGGTTTCTCGTCAAGTTTTTTTCTCTTTCTTTTCCTTTTATCTTTAATTGCTTAGCTACTTAGCAGCTACATGTACTTAGTCTCTTTTGGATTTTTGGTTGGATGTAATGGTATGGAAGGACCGCAACATTTATCAAGGGAATCAATATTTTGATCAAAATTTCTTTGTG

mRNA sequence

TATACCACTAAAACGAGATGTCCCAATGAATTTATAAAAGTAACAAAAACAAAAGAAAGAACCAATGAAAAACTAGCACGTATACACAGGACCGGAAAATATCCCTCGTTCTCCTTCTGATAGGAATTTACATTATTAACCCTGCCCTTCTGATCCACGATGTGAAATATCTGACCAGAACCAAAAACGAATAGAAAGCTGTGCCCTCCCTTTCACGCGGCAATTTCCCTTGCAGCTTTCGTGGTTCGCAAGCAGTTCCCGATTAGGTTTCCGGTCTCAAATCTGCTCCTTCAATGGCGACGGTAGCATCTGCAGGACTAAATGACATTAACAATAACAAGAATCCGCTTGGAGAAAACCCTAGTCAAACCCTAGACCCGACGATTTCTTCCTCGGCCCAGACTCCTGCCTCCGTTCCGCCTTCGTCAACTGATGGCGGGTCATCCAAGGAAAGGGATGAATCCAAGGGCTCCGGTAAGGCGTCGGTTGTAGATGATGGTGCACCGGTTTCTGATGTCCAGAGGAAAATGCGCCGCGCCGAGCGTTTTGGGATTTCAGTGCAATTGTCCGAAGAAGAAAAGCGTAATTCTCGAGCAGAACGGTTTGGTATGGGTACTACAACTAATGGATTGGGAGCATCTAATAAGACGGAGGAGGTGAAGAGAAAGGCTAGAGCTGAGAGATTTGGACTTTCTGCATCTGTGACTACTGATGATGAGGCAAAGAAGAAAGCTCGTCTTGCTAGGTTTTCATCAACATCAAAGCCAGACCCCCAGGAGGAAGAAAAGAGGAAAGCAAGGGCAATCAGGTTTTCTAATCCAACATCAAACTCTCTCACACAAGTGGAAGGGAAAGGAAATGTTGAGACGATTGCAGATGTTGCAGGCAAGGCTGGAGGTGGTGCCTGAAAAGAACATTCCCTTTTGATGGCAAGATAGCTTTTGCTTGTAAATTTGTTTTGTGGTTCGTTTTTCTTTTTCTTTTTCTTTTTAAAGTCTGATTGGCATTCCACCTTCAGAACTTTACATATCTTATCCAAATCTATATTGTTTCTTGTTGTACCTGCGTTATTGAATCTGATGATTGATTTCTTTCTCTGGCAGGTCTAGTATCCTGGTTAGGATTCCCTGTAATGGCTTCCATACCCATGTGCATTCCTTTATAATATTATCTAGTTCAAAAGTCTTCCATTCTGAGGGCAGATTCCATACTGCAAGGTGCTGTACTACGTGCTGCTGTGAGACAAGGATAGGCCGCGTCTTTGGAGGTAGATAAATGAGGTAATAGAAGTCAGACTTCTCTGCAGGCCTCATACTCTCTTAGAAGTCTGCATGTATGGAGTTCTGTAGCTGAGAATGGATCGTACTCTACAAATAGGTTTCTCGTCAAGTTTTTTTCTCTTTCTTTTCCTTTTATCTTTAATTGCTTAGCTACTTAGCAGCTACATGTACTTAGTCTCTTTTGGATTTTTGGTTGGATGTAATGGTATGGAAGGACCGCAACATTTATCAAGGGAATCAATATTTTGATCAAAATTTCTTTGTG

Coding sequence (CDS)

ATGGCGACGGTAGCATCTGCAGGACTAAATGACATTAACAATAACAAGAATCCGCTTGGAGAAAACCCTAGTCAAACCCTAGACCCGACGATTTCTTCCTCGGCCCAGACTCCTGCCTCCGTTCCGCCTTCGTCAACTGATGGCGGGTCATCCAAGGAAAGGGATGAATCCAAGGGCTCCGGTAAGGCGTCGGTTGTAGATGATGGTGCACCGGTTTCTGATGTCCAGAGGAAAATGCGCCGCGCCGAGCGTTTTGGGATTTCAGTGCAATTGTCCGAAGAAGAAAAGCGTAATTCTCGAGCAGAACGGTTTGGTATGGGTACTACAACTAATGGATTGGGAGCATCTAATAAGACGGAGGAGGTGAAGAGAAAGGCTAGAGCTGAGAGATTTGGACTTTCTGCATCTGTGACTACTGATGATGAGGCAAAGAAGAAAGCTCGTCTTGCTAGGTTTTCATCAACATCAAAGCCAGACCCCCAGGAGGAAGAAAAGAGGAAAGCAAGGGCAATCAGGTTTTCTAATCCAACATCAAACTCTCTCACACAAGTGGAAGGGAAAGGAAATGTTGAGACGATTGCAGATGTTGCAGGCAAGGCTGGAGGTGGTGCCTGA

Protein sequence

MATVASAGLNDINNNKNPLGENPSQTLDPTISSSAQTPASVPPSSTDGGSSKERDESKGSGKASVVDDGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKTEEVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTSNSLTQVEGKGNVETIADVAGKAGGGA

Homology

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BLAST of Clc04G08990 vs. NCBI nr
Match: XP_038882639.1 (protein MODIFIER OF SNC1 11 [Benincasa hispida])

HSP 1 Score: 345.5 bits (885), Expect = 3.1e-91
Identity = 192/204 (94.12%), Postives = 198/204 (97.06%), Query Frame = 0


Query: 1   MATVASAGLNDINNNKNPLGENPSQTLDPTISSSAQTPASVPPSSTDGGSSKERDESKGS 60
           MATVASAGLNDI+N+K+PLGENPSQTLDPTISSSAQ PASVP SSTDGGSSK+RDESKGS
Sbjct: 1   MATVASAGLNDISNSKSPLGENPSQTLDPTISSSAQPPASVPSSSTDGGSSKDRDESKGS 60

Query: 61  GKASVVDDGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKTE 120
           GKASV  DGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGT TNGLGASNKTE
Sbjct: 61  GKASVEGDGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTATNGLGASNKTE 120

Query: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTSNS 180
           EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTSNS
Sbjct: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTSNS 180

Query: 181 LTQVEGKGNVETIADVAGKAGGGA 205
            TQ++GKGNVETIADVAGKAGGGA
Sbjct: 181 PTQMDGKGNVETIADVAGKAGGGA 204

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BLAST of Clc04G08990 vs. NCBI nr
Match: XP_008447291.1 (PREDICTED: protein MODIFIER OF SNC1 11-like [Cucumis melo] >KAA0047316.1 protein MODIFIER OF SNC1 11-like [Cucumis melo var. makuwa])

HSP 1 Score: 344.7 bits (883), Expect = 5.3e-91
Identity = 191/204 (93.63%), Postives = 197/204 (96.57%), Query Frame = 0


Query: 1   MATVASAGLNDINNNKNPLGENPSQTLDPTISSSAQTPASVPPSSTDGGSSKERDESKGS 60
           MATVA AGLNDI+N+KNPLGENPSQTL+PTISSSAQTPASVPPSSTDGGSSKE DESK S
Sbjct: 1   MATVAPAGLNDISNSKNPLGENPSQTLEPTISSSAQTPASVPPSSTDGGSSKEGDESKCS 60

Query: 61  GKASVVDDGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKTE 120
           GK S  DDGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKTE
Sbjct: 61  GKPSAGDDGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKTE 120

Query: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTSNS 180
           EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPT NS
Sbjct: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTPNS 180

Query: 181 LTQVEGKGNVETIADVAGKAGGGA 205
           +TQV+GKGNVETIADVAGK+GGGA
Sbjct: 181 VTQVDGKGNVETIADVAGKSGGGA 204

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BLAST of Clc04G08990 vs. NCBI nr
Match: XP_031740008.1 (protein MODIFIER OF SNC1 11 [Cucumis sativus] >KGN54197.1 hypothetical protein Csa_017918 [Cucumis sativus])

HSP 1 Score: 339.7 bits (870), Expect = 1.7e-89
Identity = 189/204 (92.65%), Postives = 195/204 (95.59%), Query Frame = 0


Query: 1   MATVASAGLNDINNNKNPLGENPSQTLDPTISSSAQTPASVPPSSTDGGSSKERDESKGS 60
           MATVA AGLNDI+N+KNPLGENPSQTL+ TISSSAQ PASVPPSSTDGGSSKE DESK +
Sbjct: 1   MATVAPAGLNDISNSKNPLGENPSQTLETTISSSAQPPASVPPSSTDGGSSKEGDESKCA 60

Query: 61  GKASVVDDGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKTE 120
           GK S  DDGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKTE
Sbjct: 61  GKPSAEDDGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKTE 120

Query: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTSNS 180
           EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPT NS
Sbjct: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTPNS 180

Query: 181 LTQVEGKGNVETIADVAGKAGGGA 205
           LTQV+GKGNVETIADVAGK+GGGA
Sbjct: 181 LTQVDGKGNVETIADVAGKSGGGA 204

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BLAST of Clc04G08990 vs. NCBI nr
Match: XP_022949856.1 (protein MODIFIER OF SNC1 11-like [Cucurbita moschata] >XP_022949857.1 protein MODIFIER OF SNC1 11-like [Cucurbita moschata] >XP_022949858.1 protein MODIFIER OF SNC1 11-like [Cucurbita moschata] >KAG6603695.1 Protein MODIFIER OF SNC1 11, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033871.1 Protein MODIFIER OF SNC1 11 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 331.6 bits (849), Expect = 4.6e-87
Identity = 184/204 (90.20%), Postives = 191/204 (93.63%), Query Frame = 0


Query: 1   MATVASAGLNDINNNKNPLGENPSQTLDPTISSSAQTPASVPPSSTDGGSSKERDESKGS 60
           MATVASAG+NDI+N+KNPLGENPSQTLDPTISSSAQ P SVP SSTDGGSSKE DESKGS
Sbjct: 1   MATVASAGINDISNSKNPLGENPSQTLDPTISSSAQPPVSVPLSSTDGGSSKEGDESKGS 60

Query: 61  GKASVVDDGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKTE 120
            K SV  DG PVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNK+E
Sbjct: 61  DKTSVEGDGEPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKSE 120

Query: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTSNS 180
           EVKRKARAERFGL ASV TDDEAKKKARL RFSSTSKPD QEEEKRKARAIRFSNPTSNS
Sbjct: 121 EVKRKARAERFGLPASVATDDEAKKKARLGRFSSTSKPDSQEEEKRKARAIRFSNPTSNS 180

Query: 181 LTQVEGKGNVETIADVAGKAGGGA 205
           LTQV+GKGN+ETIAD+AGKAGGGA
Sbjct: 181 LTQVDGKGNIETIADIAGKAGGGA 204

[Close]

BLAST of Clc04G08990 vs. NCBI nr
Match: XP_022977777.1 (protein MODIFIER OF SNC1 11-like [Cucurbita maxima] >XP_022977778.1 protein MODIFIER OF SNC1 11-like [Cucurbita maxima] >XP_022977779.1 protein MODIFIER OF SNC1 11-like [Cucurbita maxima])

HSP 1 Score: 328.9 bits (842), Expect = 3.0e-86
Identity = 183/204 (89.71%), Postives = 190/204 (93.14%), Query Frame = 0


Query: 1   MATVASAGLNDINNNKNPLGENPSQTLDPTISSSAQTPASVPPSSTDGGSSKERDESKGS 60
           MATVASAG+NDI+N+KN LGENPSQTLDPTISSSAQ P SVP SSTDGGSSKE DESKGS
Sbjct: 1   MATVASAGINDISNSKNSLGENPSQTLDPTISSSAQPPVSVPLSSTDGGSSKEMDESKGS 60

Query: 61  GKASVVDDGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKTE 120
            K SV  DG PVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNK+E
Sbjct: 61  DKTSVEGDGEPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKSE 120

Query: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTSNS 180
           EVKRKARAERFGL ASV TDDEAKKKARL RFSSTSKPD QEEEKRKARAIRFSNPTSNS
Sbjct: 121 EVKRKARAERFGLPASVATDDEAKKKARLGRFSSTSKPDSQEEEKRKARAIRFSNPTSNS 180

Query: 181 LTQVEGKGNVETIADVAGKAGGGA 205
           LTQV+GKGN+ETIAD+AGKAGGGA
Sbjct: 181 LTQVDGKGNIETIADIAGKAGGGA 204

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BLAST of Clc04G08990 vs. ExPASy Swiss-Prot
Match: Q9LZ08 (Protein MODIFIER OF SNC1 11 OS=Arabidopsis thaliana OX=3702 GN=MOS11 PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.0e-28
Identity = 94/201 (46.77%), Postives = 124/201 (61.69%), Query Frame = 0


Query: 12  INNNKNPLGENPSQTLDPTISSSAQTPASVP---PSSTDGGSSKERDESKGSGKASVVDD 71
           +N      GENP + +D   +   +T   +       +D G  KE  +S G G  + VD 
Sbjct: 13  VNGGGLSTGENPKKIVDLNTTELDRTDDILDGEVKGFSDSGEKKEETDSNGIGSTAGVDS 72

Query: 72  G--APVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFG--MGTTTNGLGASNKTEEVKR 131
           G  +PV D+Q+K+RRAERFG+SV+L+EEEKRNSRAERFG       NG   + K EE+KR
Sbjct: 73  GDISPVDDIQKKIRRAERFGVSVKLTEEEKRNSRAERFGTVAAAVVNGSEGTKKAEELKR 132

Query: 132 KARAERFGL-SASVTTD---DEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTS-N 191
           KARA+RFG+ SA+ TTD   +EAKKKARLARF   +K D  EE KRKARA+RFS   S +
Sbjct: 133 KARADRFGVPSATSTTDKTEEEAKKKARLARFGKETKVDSAEENKRKARALRFSKEASAD 192

Query: 192 SLTQVEGKGNVETIADVAGKA 201
           + + +  K  +   A V+G A
Sbjct: 193 ASSDLPEKQIIGKEAAVSGSA 213

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BLAST of Clc04G08990 vs. ExPASy Swiss-Prot
Match: P82979 (SAP domain-containing ribonucleoprotein OS=Homo sapiens OX=9606 GN=SARNP PE=1 SV=3)

HSP 1 Score: 47.0 bits (110), Expect = 3.0e-04
Identity = 47/126 (37.30%), Postives = 66/126 (52.38%), Query Frame = 0


Query: 60  SGKASVVDDGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTT-TNGLGASNK 119
           + +  VV   + +   +R  +RAERF + V L  E K+ +RA RFG+ +  T GL + NK
Sbjct: 85  AAEKKVVKITSEIPQTERMQKRAERFNVPVSL--ESKKAARAARFGISSVPTKGLSSDNK 144

Query: 120 --TEEVKRKARAERFGL---SASVTTDDEAKKKARLARF------SSTSKPDPQEEEKRK 174
                 K K RA+RFGL   S S  ++D+ K K R  RF      + T   +  E +KRK
Sbjct: 145 PMVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRK 204

[Close]

BLAST of Clc04G08990 vs. ExPASy Swiss-Prot
Match: Q5R4V4 (SAP domain-containing ribonucleoprotein OS=Pongo abelii OX=9601 GN=SARNP PE=2 SV=3)

HSP 1 Score: 47.0 bits (110), Expect = 3.0e-04
Identity = 47/126 (37.30%), Postives = 66/126 (52.38%), Query Frame = 0


Query: 60  SGKASVVDDGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTT-TNGLGASNK 119
           + +  VV   + +   +R  +RAERF + V L  E K+ +RA RFG+ +  T GL + NK
Sbjct: 85  AAEKKVVKITSEIPQTERMQKRAERFNVPVSL--ESKKAARAARFGISSVPTKGLSSDNK 144

Query: 120 --TEEVKRKARAERFGL---SASVTTDDEAKKKARLARF------SSTSKPDPQEEEKRK 174
                 K K RA+RFGL   S S  ++D+ K K R  RF      + T   +  E +KRK
Sbjct: 145 PMVNLDKLKERAQRFGLNVSSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRK 204

[Close]

BLAST of Clc04G08990 vs. ExPASy TrEMBL
Match: A0A5A7TZD8 (Protein MODIFIER OF SNC1 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001340 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 2.6e-91
Identity = 191/204 (93.63%), Postives = 197/204 (96.57%), Query Frame = 0


Query: 1   MATVASAGLNDINNNKNPLGENPSQTLDPTISSSAQTPASVPPSSTDGGSSKERDESKGS 60
           MATVA AGLNDI+N+KNPLGENPSQTL+PTISSSAQTPASVPPSSTDGGSSKE DESK S
Sbjct: 1   MATVAPAGLNDISNSKNPLGENPSQTLEPTISSSAQTPASVPPSSTDGGSSKEGDESKCS 60

Query: 61  GKASVVDDGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKTE 120
           GK S  DDGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKTE
Sbjct: 61  GKPSAGDDGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKTE 120

Query: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTSNS 180
           EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPT NS
Sbjct: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTPNS 180

Query: 181 LTQVEGKGNVETIADVAGKAGGGA 205
           +TQV+GKGNVETIADVAGK+GGGA
Sbjct: 181 VTQVDGKGNVETIADVAGKSGGGA 204

[Close]

BLAST of Clc04G08990 vs. ExPASy TrEMBL
Match: A0A1S3BHQ8 (protein MODIFIER OF SNC1 11-like OS=Cucumis melo OX=3656 GN=LOC103489757 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 2.6e-91
Identity = 191/204 (93.63%), Postives = 197/204 (96.57%), Query Frame = 0


Query: 1   MATVASAGLNDINNNKNPLGENPSQTLDPTISSSAQTPASVPPSSTDGGSSKERDESKGS 60
           MATVA AGLNDI+N+KNPLGENPSQTL+PTISSSAQTPASVPPSSTDGGSSKE DESK S
Sbjct: 1   MATVAPAGLNDISNSKNPLGENPSQTLEPTISSSAQTPASVPPSSTDGGSSKEGDESKCS 60

Query: 61  GKASVVDDGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKTE 120
           GK S  DDGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKTE
Sbjct: 61  GKPSAGDDGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKTE 120

Query: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTSNS 180
           EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPT NS
Sbjct: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTPNS 180

Query: 181 LTQVEGKGNVETIADVAGKAGGGA 205
           +TQV+GKGNVETIADVAGK+GGGA
Sbjct: 181 VTQVDGKGNVETIADVAGKSGGGA 204

[Close]

BLAST of Clc04G08990 vs. ExPASy TrEMBL
Match: A0A0A0L0R4 (Tho1_MOS11_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G293070 PE=4 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 8.3e-90
Identity = 189/204 (92.65%), Postives = 195/204 (95.59%), Query Frame = 0


Query: 1   MATVASAGLNDINNNKNPLGENPSQTLDPTISSSAQTPASVPPSSTDGGSSKERDESKGS 60
           MATVA AGLNDI+N+KNPLGENPSQTL+ TISSSAQ PASVPPSSTDGGSSKE DESK +
Sbjct: 1   MATVAPAGLNDISNSKNPLGENPSQTLETTISSSAQPPASVPPSSTDGGSSKEGDESKCA 60

Query: 61  GKASVVDDGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKTE 120
           GK S  DDGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKTE
Sbjct: 61  GKPSAEDDGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKTE 120

Query: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTSNS 180
           EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPT NS
Sbjct: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTPNS 180

Query: 181 LTQVEGKGNVETIADVAGKAGGGA 205
           LTQV+GKGNVETIADVAGK+GGGA
Sbjct: 181 LTQVDGKGNVETIADVAGKSGGGA 204

[Close]

BLAST of Clc04G08990 vs. ExPASy TrEMBL
Match: A0A6J1GD78 (protein MODIFIER OF SNC1 11-like OS=Cucurbita moschata OX=3662 GN=LOC111453127 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 2.2e-87
Identity = 184/204 (90.20%), Postives = 191/204 (93.63%), Query Frame = 0


Query: 1   MATVASAGLNDINNNKNPLGENPSQTLDPTISSSAQTPASVPPSSTDGGSSKERDESKGS 60
           MATVASAG+NDI+N+KNPLGENPSQTLDPTISSSAQ P SVP SSTDGGSSKE DESKGS
Sbjct: 1   MATVASAGINDISNSKNPLGENPSQTLDPTISSSAQPPVSVPLSSTDGGSSKEGDESKGS 60

Query: 61  GKASVVDDGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKTE 120
            K SV  DG PVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNK+E
Sbjct: 61  DKTSVEGDGEPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKSE 120

Query: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTSNS 180
           EVKRKARAERFGL ASV TDDEAKKKARL RFSSTSKPD QEEEKRKARAIRFSNPTSNS
Sbjct: 121 EVKRKARAERFGLPASVATDDEAKKKARLGRFSSTSKPDSQEEEKRKARAIRFSNPTSNS 180

Query: 181 LTQVEGKGNVETIADVAGKAGGGA 205
           LTQV+GKGN+ETIAD+AGKAGGGA
Sbjct: 181 LTQVDGKGNIETIADIAGKAGGGA 204

[Close]

BLAST of Clc04G08990 vs. ExPASy TrEMBL
Match: A0A6J1IR28 (protein MODIFIER OF SNC1 11-like OS=Cucurbita maxima OX=3661 GN=LOC111477977 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.5e-86
Identity = 183/204 (89.71%), Postives = 190/204 (93.14%), Query Frame = 0


Query: 1   MATVASAGLNDINNNKNPLGENPSQTLDPTISSSAQTPASVPPSSTDGGSSKERDESKGS 60
           MATVASAG+NDI+N+KN LGENPSQTLDPTISSSAQ P SVP SSTDGGSSKE DESKGS
Sbjct: 1   MATVASAGINDISNSKNSLGENPSQTLDPTISSSAQPPVSVPLSSTDGGSSKEMDESKGS 60

Query: 61  GKASVVDDGAPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKTE 120
            K SV  DG PVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNK+E
Sbjct: 61  DKTSVEGDGEPVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFGMGTTTNGLGASNKSE 120

Query: 121 EVKRKARAERFGLSASVTTDDEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTSNS 180
           EVKRKARAERFGL ASV TDDEAKKKARL RFSSTSKPD QEEEKRKARAIRFSNPTSNS
Sbjct: 121 EVKRKARAERFGLPASVATDDEAKKKARLGRFSSTSKPDSQEEEKRKARAIRFSNPTSNS 180

Query: 181 LTQVEGKGNVETIADVAGKAGGGA 205
           LTQV+GKGN+ETIAD+AGKAGGGA
Sbjct: 181 LTQVDGKGNIETIADIAGKAGGGA 204

[Close]

BLAST of Clc04G08990 vs. TAIR 10
Match: AT5G02770.1 (unknown protein; Has 469 Blast hits to 336 proteins in 126 species: Archae - 0; Bacteria - 54; Metazoa - 249; Fungi - 22; Plants - 47; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). )

HSP 1 Score: 126.7 bits (317), Expect = 2.1e-29
Identity = 94/201 (46.77%), Postives = 124/201 (61.69%), Query Frame = 0


Query: 12  INNNKNPLGENPSQTLDPTISSSAQTPASVP---PSSTDGGSSKERDESKGSGKASVVDD 71
           +N      GENP + +D   +   +T   +       +D G  KE  +S G G  + VD 
Sbjct: 13  VNGGGLSTGENPKKIVDLNTTELDRTDDILDGEVKGFSDSGEKKEETDSNGIGSTAGVDS 72

Query: 72  G--APVSDVQRKMRRAERFGISVQLSEEEKRNSRAERFG--MGTTTNGLGASNKTEEVKR 131
           G  +PV D+Q+K+RRAERFG+SV+L+EEEKRNSRAERFG       NG   + K EE+KR
Sbjct: 73  GDISPVDDIQKKIRRAERFGVSVKLTEEEKRNSRAERFGTVAAAVVNGSEGTKKAEELKR 132

Query: 132 KARAERFGL-SASVTTD---DEAKKKARLARFSSTSKPDPQEEEKRKARAIRFSNPTS-N 191
           KARA+RFG+ SA+ TTD   +EAKKKARLARF   +K D  EE KRKARA+RFS   S +
Sbjct: 133 KARADRFGVPSATSTTDKTEEEAKKKARLARFGKETKVDSAEENKRKARALRFSKEASAD 192

Query: 192 SLTQVEGKGNVETIADVAGKA 201
           + + +  K  +   A V+G A
Sbjct: 193 ASSDLPEKQIIGKEAAVSGSA 213

The following BLAST results are available for this feature:

BLAST of Clc04G08990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882639.1	3.1e-91	94.12	protein MODIFIER OF SNC1 11 [Benincasa hispida]	[more]
XP_008447291.1	5.3e-91	93.63	PREDICTED: protein MODIFIER OF SNC1 11-like [Cucumis melo] >KAA0047316.1 protein...	[more]
XP_031740008.1	1.7e-89	92.65	protein MODIFIER OF SNC1 11 [Cucumis sativus] >KGN54197.1 hypothetical protein C...	[more]
XP_022949856.1	4.6e-87	90.20	protein MODIFIER OF SNC1 11-like [Cucurbita moschata] >XP_022949857.1 protein MO...	[more]
XP_022977777.1	3.0e-86	89.71	protein MODIFIER OF SNC1 11-like [Cucurbita maxima] >XP_022977778.1 protein MODI...	[more]

BLAST of Clc04G08990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZ08	3.0e-28	46.77	Protein MODIFIER OF SNC1 11 OS=Arabidopsis thaliana OX=3702 GN=MOS11 PE=1 SV=1	[more]
P82979	3.0e-04	37.30	SAP domain-containing ribonucleoprotein OS=Homo sapiens OX=9606 GN=SARNP PE=1 SV...	[more]
Q5R4V4	3.0e-04	37.30	SAP domain-containing ribonucleoprotein OS=Pongo abelii OX=9601 GN=SARNP PE=2 SV...	[more]

BLAST of Clc04G08990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZD8	2.6e-91	93.63	Protein MODIFIER OF SNC1 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A1S3BHQ8	2.6e-91	93.63	protein MODIFIER OF SNC1 11-like OS=Cucumis melo OX=3656 GN=LOC103489757 PE=4 SV...	[more]
A0A0A0L0R4	8.3e-90	92.65	Tho1_MOS11_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G29307...	[more]
A0A6J1GD78	2.2e-87	90.20	protein MODIFIER OF SNC1 11-like OS=Cucurbita moschata OX=3662 GN=LOC111453127 P...	[more]
A0A6J1IR28	1.5e-86	89.71	protein MODIFIER OF SNC1 11-like OS=Cucurbita maxima OX=3661 GN=LOC111477977 PE=...	[more]

BLAST of Clc04G08990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02770.1	2.1e-29	46.77	unknown protein; Has 469 Blast hits to 336 proteins in 126 species: Archae - 0; ...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040746	THO1_MOS11, C-terminal domain	PFAM	PF18592	Tho1_MOS11_C	coord: 74..105 e-value: 3.8E-11 score: 42.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..186
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..186
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 6..48
IPR044209	Protein MODIFIER OF SNC1 11	PANTHER	PTHR47701	PROTEIN MODIFIER OF SNC1 11	coord: 17..200

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G08990.1	Clc04G08990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016973	poly(A)+ mRNA export from nucleus
cellular_component	GO:0005634	nucleus