Clc04G08710 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G08710
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Glycine rich RNA binding protein
Location	ClcChr04: 22415904 .. 22418008 (+)
RNA-Seq Expression	Clc04G08710
Synteny	Clc04G08710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAAATTAATAATAATAATAAATAATGAAAATGAAAATCACACTTGAAATATGAGAAGTGCGACAACTGTGCAAGCTAAAACCCTAACCACTGAATATCTCTCCGTCGCAGTGGTTCTCTTTTTAGTCGGCCGATCGAATACGATGGCTTTCTTCTCCACCGTAAGGCGCGTTCTCAATGGATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCATTTTACGATCCCAGTGGACTGCCGTTCGTCTCAGCTCAACTCTCACATCCCCAAAGCTCTTCATTAGTGGTACGTCTCACAGAAAAATAAAAAACAGAGAATCATCTTGTGACGCCTTTCTTCTTATTTGGATTATTGAGAATGATTCGGAAATTTGGTAATGGAATCAATTTTCTGTTTGGATGCTGAATTTTTTTTAAAAAAATTTTTGGTAATGGGATCGATTTTCGGAGCACTAAATGCGATCCAGTTAATCAGCGATTCTCTGTTCTGTTGCATTTCTTTTATTTCTGGTCCTTTTCTTCGATTGGATGCGTCTTTTCCTATTTGCATATATGAAATTACTTCACTCTTCAGTGGTGGGGGTTGTTCTGGCGTAGGAAATTAGAAATTTATTCCGATCTTAATAGTAGTTATCATTTATCAATACGTAGATTTGTGTGCCTGCTTCATAGCTTAAGGACATCACAAGTATACTCTTGTACAACTTATAGAACATATCCTGTTCAGGTAGGGTCGTAAGAATGCTTTGCTAATTCATTTCTTATGCGACACGATATGCCCTTTGCATTCAAAGGTTAGAATGAAGGGAGTAGGTACCATGGGAGTACTAAAATTTCCCCCTCCCCCCACCACAAAAAAATGCATTGATAAACCTTCTCATTTGCTAAAATCATGAGACAGCACCCTCAATTCCTACATTTTTTATTGACAATTTAACACATTATTAAGTGGTATACATCATTTTATTTCATGGGCCTAGACCATTCTTAAATGCTTATGTTATGGAAGATAATGGATGAAGGTAGTATGAAAATAGTAGTACTAGAAATTGTTCTTGTTGTAGTTGATATTAATGGACATGTGATGTTTTTCATAATCTAATATTCTTTATGAATCCAAAAATTGTAGAATATGGAAACAAATAACTTGCATTAGCATAAGGTTGATTATTTGCTGAACCACGATGAACTGAACTGTTTGATCTGTTTTGGATTGGATATGTCTTGAGAAAGTCTCATTCCTATAAAATGAACAGGTCTTTCAAGATTAACAACAGATGAGAAGCTCCAGGAAGCCTTTTCTTCATTTGGTCAGCTTGTAGAAGGTTTAATACTCTCTCTCCTTCTCTCCAATTTACAATTCTGTGAACATTTGTCGCAGAGTGCAACATGATGACATTGCCTCAACATTTGTACAGCAAAGGTTATAACCGATAGGGCGACGGGAAGATCAAAGGGATTCGGCTTTGTAACCTACAGTACGATAGAAGAGGCTGAGAAAGCTAGAGAAGGAATGAATGCCAAGTTTCTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGGGAGCCTAGGCCACCTCCACAGCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGATGATTACTTGCAAAATATACGACATCTCATAGCATTTGGTCATTTTTTCCAATTGCATATGGTTGAGTTTGATGTATGTTCATCATCCAAGGGTACTATAGGTAAAATTTATGAGACAGCACCCTCAAGGGAGCCTCAAAATTGCCAGAAAGAGGGTATTTTTTGTTATACGTATGGATTTGGATTTAGAAAAGTATTTACTGACCTTAGGTTTATTATTCATATTTTAATTCTTAACTTCTTATATGTATTTTGTTTTAGTTTTTACATCTAGTTATTCTATTTTGATCTCTAATTTTCTGTGGAAAATGAAAATCTATTTTGGTATTTATGTTTACATCTTAGAGTATTTGAATGTAGTATCATACCAGTATGTGTAAATCAAAATCTTAGGCCCGAGGGTGTGTTTTGTTCCCCCATTTGATAATTATTTAGCCTCCATTTGAGAATT

mRNA sequence

TTGAAATTAATAATAATAATAAATAATGAAAATGAAAATCACACTTGAAATATGAGAAGTGCGACAACTGTGCAAGCTAAAACCCTAACCACTGAATATCTCTCCGTCGCAGTGGTTCTCTTTTTAGTCGGCCGATCGAATACGATGGCTTTCTTCTCCACCGTAAGGCGCGTTCTCAATGGATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCATTTTACGATCCCAGTGGACTGCCGTTCGTCTCAGCTCAACTCTCACATCCCCAAAGCTCTTCATTAGTGGTCTTTCAAGATTAACAACAGATGAGAAGCTCCAGGAAGCCTTTTCTTCATTTGGTCAGCTTGTAGAAGCAAAGGTTATAACCGATAGGGCGACGGGAAGATCAAAGGGATTCGGCTTTGTAACCTACAGTACGATAGAAGAGGCTGAGAAAGCTAGAGAAGGAATGAATGCCAAGTTTCTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGGGAGCCTAGGCCACCTCCACAGCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGATGATTACTTGCAAAATATACGACATCTCATAGCATTTGGTCATTTTTTCCAATTGCATATGGTTGAGTTTGATGTATGTTCATCATCCAAGGGTACTATAGGTAAAATTTATGAGACAGCACCCTCAAGGGAGCCTCAAAATTGCCAGAAAGAGGGTATTTTTTGTTATACGTATGGATTTGGATTTAGAAAAGTATTTACTGACCTTAGGTTTATTATTCATATTTTAATTCTTAACTTCTTATATGTATTTTGTTTTAGTTTTTACATCTAGTTATTCTATTTTGATCTCTAATTTTCTGTGGAAAATGAAAATCTATTTTGGTATTTATGTTTACATCTTAGAGTATTTGAATGTAGTATCATACCAGTATGTGTAAATCAAAATCTTAGGCCCGAGGGTGTGTTTTGTTCCCCCATTTGATAATTATTTAGCCTCCATTTGAGAATT

Coding sequence (CDS)

ATGAGAAGTGCGACAACTGTGCAAGCTAAAACCCTAACCACTGAATATCTCTCCGTCGCAGTGGTTCTCTTTTTAGTCGGCCGATCGAATACGATGGCTTTCTTCTCCACCGTAAGGCGCGTTCTCAATGGATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCATTTTACGATCCCAGTGGACTGCCGTTCGTCTCAGCTCAACTCTCACATCCCCAAAGCTCTTCATTAGTGGTCTTTCAAGATTAACAACAGATGAGAAGCTCCAGGAAGCCTTTTCTTCATTTGGTCAGCTTGTAGAAGCAAAGGTTATAACCGATAGGGCGACGGGAAGATCAAAGGGATTCGGCTTTGTAACCTACAGTACGATAGAAGAGGCTGAGAAAGCTAGAGAAGGAATGAATGCCAAGTTTCTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGGGAGCCTAGGCCACCTCCACAGCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGATGA

Protein sequence

MRSATTVQAKTLTTEYLSVAVVLFLVGRSNTMAFFSTVRRVLNGSSSSSSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG

Homology

[Close]

BLAST of Clc04G08710 vs. NCBI nr
Match: XP_031739912.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KAE8649523.1 hypothetical protein Csa_018111 [Cucumis sativus])

HSP 1 Score: 266.5 bits (680), Expect = 1.6e-67
Identity = 139/149 (93.29%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 32  MAFFSTVRRVLNGSSSSSSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQ 91
           MAFFSTVRRVLNG   SSSSSSSSSILRSQW AVRLSSTLTSPKLFISGLSRLTTDEKL+
Sbjct: 1   MAFFSTVRRVLNG---SSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLR 60

Query: 92  EAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK 151
           EAFSSFGQLV+AKV+TDRATGRSKGF FVTYSTI+EAEKARE MNAKFLDGWVIFVDPAK
Sbjct: 61  EAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAK 120

Query: 152 PREPRPPPQPQSETSEFGIRTNKTIGWCG 181
           PREPRPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 PREPRPPPQPQSETSEFGIRTNKTIGWCG 146

[Close]

BLAST of Clc04G08710 vs. NCBI nr
Match: XP_022143719.1 (organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia])

HSP 1 Score: 264.2 bits (674), Expect = 8.0e-67
Identity = 136/149 (91.28%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 32  MAFFSTVRRVLNGSSSSSSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQ 91
           MAF S+VRRVLNG    SSSS++SSIL+SQWT +RLSSTLTSPKLFISGLSRLTTDEKLQ
Sbjct: 1   MAFLSSVRRVLNG----SSSSAASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQ 60

Query: 92  EAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK 151
           EAFSSFGQLVEAKVITDRATGRSKGFGFVTY+TIE+AEKAREGMNAKFLDGWVIFVDPAK
Sbjct: 61  EAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAK 120

Query: 152 PREPRPPPQPQSETSEFGIRTNKTIGWCG 181
           PREPRPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 PREPRPPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Clc04G08710 vs. NCBI nr
Match: XP_022972736.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucurbita maxima])

HSP 1 Score: 260.4 bits (664), Expect = 1.2e-65
Identity = 137/152 (90.13%), Postives = 141/152 (92.76%), Query Frame = 0


Query: 32  MAFFSTVRRVLNGSSSSSSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQ 91
           MAFFSTVRRVLNG      SSSSSS+LRSQWT+ RLSSTLTSPKLFISGLSRLTTDEKLQ
Sbjct: 1   MAFFSTVRRVLNG------SSSSSSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQ 60

Query: 92  EAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK 151
           EAF+SFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK
Sbjct: 61  EAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK 120

Query: 152 PREPRPPPQPQ---SETSEFGIRTNKTIGWCG 181
           PREPRPPP PQ   +ETSEFGIRTNKTIGWCG
Sbjct: 121 PREPRPPPPPQPQSAETSEFGIRTNKTIGWCG 146

[Close]

BLAST of Clc04G08710 vs. NCBI nr
Match: XP_023517167.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 260.0 bits (663), Expect = 1.5e-65
Identity = 139/151 (92.05%), Postives = 142/151 (94.04%), Query Frame = 0


Query: 32  MAFFSTVRRVLNGSSSSSSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQ 91
           MAFFSTVRRVLNG      SSSSSS+LRSQWT+ RLSSTLTSPKLFISGLSRLTTDEKLQ
Sbjct: 1   MAFFSTVRRVLNG------SSSSSSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQ 60

Query: 92  EAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK 151
           EAF+SFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK
Sbjct: 61  EAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK 120

Query: 152 PREPR-PPPQPQS-ETSEFGIRTNKTIGWCG 181
           PREPR PPPQPQS ETSEFGIRTNKTIGWCG
Sbjct: 121 PREPRPPPPQPQSAETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Clc04G08710 vs. NCBI nr
Match: XP_008447620.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo])

HSP 1 Score: 260.0 bits (663), Expect = 1.5e-65
Identity = 135/149 (90.60%), Postives = 141/149 (94.63%), Query Frame = 0


Query: 32  MAFFSTVRRVLNGSSSSSSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQ 91
           MAFFSTVRRVL+G    SS SSSSSILRSQW AVRLSSTLTSPKLFISGLSRLTTDEKL+
Sbjct: 1   MAFFSTVRRVLSG----SSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLR 60

Query: 92  EAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK 151
           EAFSSFGQLV+AKV+TDRATGRSKGF FVTYSTIEEAE+AR+ MNAKFLDGWVIFVDPAK
Sbjct: 61  EAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAK 120

Query: 152 PREPRPPPQPQSETSEFGIRTNKTIGWCG 181
           PREPRPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 PREPRPPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Clc04G08710 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.5e-23
Identity = 52/94 (55.32%), Postives = 69/94 (73.40%), Query Frame = 0


Query: 73  SPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAR 132
           S  LF+SGLS+ TT E L+ AF+ FG++ +AKV+TDR +G SKGFGFV Y+T+E++ K  
Sbjct: 55  STNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGI 114

Query: 133 EGMNAKFLDGWVIFVDPAKPREPRPPPQPQSETS 167
            GM+ KFLDGWVIF + A+PRE     QPQ+  S
Sbjct: 115 AGMDGKFLDGWVIFAEYARPREQSQSYQPQNNMS 148

[Close]

BLAST of Clc04G08710 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.0e-16
Identity = 47/97 (48.45%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 75  KLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREG 134
           KLFI GLS  TT++ L EAFS  GQ+VEA+++ DR + RSKGFGFVT+++ +EA+KA   
Sbjct: 35  KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94

Query: 135 MNAKFLDGWVIFVDPAKPRE----------PRPPPQP 162
            N + L+G  IFVD AK ++           R PP P
Sbjct: 95  FNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPDP 131

[Close]

BLAST of Clc04G08710 vs. ExPASy Swiss-Prot
Match: Q9FZ84 (Glycine-rich RNA-binding protein 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG6 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.0e-15
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 70  TLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAE 129
           +LT  K+F+ GLS  T  E L+EAF SFG++V+A V+ DR +G S+GFGFVTY +IE A 
Sbjct: 32  SLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVAN 91

Query: 130 KAREGMNAKFLDGWVIFVDPA 151
            A + M  K LDG +I V PA
Sbjct: 92  NAMQAMQNKELDGRIIGVHPA 112

[Close]

BLAST of Clc04G08710 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.3e-15
Identity = 56/137 (40.88%), Postives = 77/137 (56.20%), Query Frame = 0


Query: 39  RRVLNGSSSSSSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFG 98
           RR + G   SS  S+ SS      ++   SS+    KL++SGLS  TT++ L++ F  FG
Sbjct: 48  RRDIGGVLISSCLSTDSS------SSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFG 107

Query: 99  QLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREP--- 158
            L+   ++ D+   R KGF F+ Y T EEA KA +GM+ KFLDG VIFV+ AK R     
Sbjct: 108 NLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMSR 167

Query: 159 ----RPPPQPQSETSEF 169
               R  P+PQS+   F
Sbjct: 168 AKPRRDFPKPQSKPRTF 178

[Close]

BLAST of Clc04G08710 vs. ExPASy Swiss-Prot
Match: Q99070 (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.7e-15
Identity = 40/79 (50.63%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 75  KLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREG 134
           + F+ GL+  T +E L++AF++FGQ++++KVITDR TGRS+GFGFVT+S+ +    A E 
Sbjct: 9   RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68

Query: 135 MNAKFLDGWVIFVDPAKPR 154
           MN K LDG  I V+ A+ R
Sbjct: 69  MNGKELDGRNITVNQAQSR 87

[Close]

BLAST of Clc04G08710 vs. ExPASy TrEMBL
Match: A0A6J1CQ59 (organelle RRM domain-containing protein 2, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111013559 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.9e-67
Identity = 136/149 (91.28%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 32  MAFFSTVRRVLNGSSSSSSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQ 91
           MAF S+VRRVLNG    SSSS++SSIL+SQWT +RLSSTLTSPKLFISGLSRLTTDEKLQ
Sbjct: 1   MAFLSSVRRVLNG----SSSSAASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQ 60

Query: 92  EAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK 151
           EAFSSFGQLVEAKVITDRATGRSKGFGFVTY+TIE+AEKAREGMNAKFLDGWVIFVDPAK
Sbjct: 61  EAFSSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAK 120

Query: 152 PREPRPPPQPQSETSEFGIRTNKTIGWCG 181
           PREPRPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 PREPRPPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Clc04G08710 vs. ExPASy TrEMBL
Match: A0A6J1I6S8 (organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111471250 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 5.6e-66
Identity = 137/152 (90.13%), Postives = 141/152 (92.76%), Query Frame = 0


Query: 32  MAFFSTVRRVLNGSSSSSSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQ 91
           MAFFSTVRRVLNG      SSSSSS+LRSQWT+ RLSSTLTSPKLFISGLSRLTTDEKLQ
Sbjct: 1   MAFFSTVRRVLNG------SSSSSSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQ 60

Query: 92  EAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK 151
           EAF+SFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK
Sbjct: 61  EAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK 120

Query: 152 PREPRPPPQPQ---SETSEFGIRTNKTIGWCG 181
           PREPRPPP PQ   +ETSEFGIRTNKTIGWCG
Sbjct: 121 PREPRPPPPPQPQSAETSEFGIRTNKTIGWCG 146

[Close]

BLAST of Clc04G08710 vs. ExPASy TrEMBL
Match: A0A1S3BHV3 (glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490031 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 7.3e-66
Identity = 135/149 (90.60%), Postives = 141/149 (94.63%), Query Frame = 0


Query: 32  MAFFSTVRRVLNGSSSSSSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQ 91
           MAFFSTVRRVL+G    SS SSSSSILRSQW AVRLSSTLTSPKLFISGLSRLTTDEKL+
Sbjct: 1   MAFFSTVRRVLSG----SSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLR 60

Query: 92  EAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK 151
           EAFSSFGQLV+AKV+TDRATGRSKGF FVTYSTIEEAE+AR+ MNAKFLDGWVIFVDPAK
Sbjct: 61  EAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAK 120

Query: 152 PREPRPPPQPQSETSEFGIRTNKTIGWCG 181
           PREPRPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 PREPRPPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Clc04G08710 vs. ExPASy TrEMBL
Match: A0A6J1HDN1 (organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111463207 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 9.6e-66
Identity = 139/151 (92.05%), Postives = 141/151 (93.38%), Query Frame = 0


Query: 32  MAFFSTVRRVLNGSSSSSSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQ 91
           MAFFSTVRRVLNG      SSSSSS+LRSQWT  RLSSTLTSPKLFISGLSRLTTDEKLQ
Sbjct: 1   MAFFSTVRRVLNG------SSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQ 60

Query: 92  EAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK 151
           EAF+SFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK
Sbjct: 61  EAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK 120

Query: 152 PREPR-PPPQPQS-ETSEFGIRTNKTIGWCG 181
           PREPR PPPQPQS ETSEFGIRTNKTIGWCG
Sbjct: 121 PREPRPPPPQPQSAETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Clc04G08710 vs. ExPASy TrEMBL
Match: A0A7N2LNA5 (RRM domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 5.6e-58
Identity = 118/149 (79.19%), Postives = 133/149 (89.26%), Query Frame = 0


Query: 32  MAFFSTVRRVLNGSSSSSSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQ 91
           MAF S +RRVL G      SS++SSIL+S +T++R ++TLTSPKLFISGLSRLTTD+KLQ
Sbjct: 1   MAFVSGIRRVLGG-----GSSTASSILQSHYTSIRFNTTLTSPKLFISGLSRLTTDQKLQ 60

Query: 92  EAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK 151
           EAFS FGQLV+AKVITDRATGRSKGFGFV+Y+TIEEAEKAREGMNAKFLDGWVIFVDPAK
Sbjct: 61  EAFSPFGQLVDAKVITDRATGRSKGFGFVSYATIEEAEKAREGMNAKFLDGWVIFVDPAK 120

Query: 152 PREPRPPPQPQSETSEFGIRTNKTIGWCG 181
           PREPRPPPQPQ E SE G RTN+T+GWCG
Sbjct: 121 PREPRPPPQPQQEPSETGFRTNRTVGWCG 144

[Close]

BLAST of Clc04G08710 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 185.7 bits (470), Expect = 3.4e-47
Identity = 102/150 (68.00%), Postives = 118/150 (78.67%), Query Frame = 0


Query: 32  MAFFSTVRRVLNGSSSSSSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQ 91
           MAF S+ RR++ GSSS  SS S           VR  STLTSP+LF+SGLSRLTT+EKLQ
Sbjct: 1   MAFVSSFRRLVAGSSSLLSSPS---------LCVRRCSTLTSPRLFVSGLSRLTTNEKLQ 60

Query: 92  EAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAK 151
           +AF+SFGQLV+A+VITDR +GRSKGFGFVTY+TIE+AEKA+  MNAKFLDGWVIFVDPA+
Sbjct: 61  DAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPAR 120

Query: 152 PREPRPPPQ--PQSETSEFGIRTNKTIGWC 180
           PREPR P Q  P   +SE G  TNKTIGWC
Sbjct: 121 PREPRRPLQQEPLRPSSESGFTTNKTIGWC 141

[Close]

BLAST of Clc04G08710 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 110.2 bits (274), Expect = 1.8e-24
Identity = 52/94 (55.32%), Postives = 69/94 (73.40%), Query Frame = 0


Query: 73  SPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAR 132
           S  LF+SGLS+ TT E L+ AF+ FG++ +AKV+TDR +G SKGFGFV Y+T+E++ K  
Sbjct: 55  STNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGI 114

Query: 133 EGMNAKFLDGWVIFVDPAKPREPRPPPQPQSETS 167
            GM+ KFLDGWVIF + A+PRE     QPQ+  S
Sbjct: 115 AGMDGKFLDGWVIFAEYARPREQSQSYQPQNNMS 148

[Close]

BLAST of Clc04G08710 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 86.7 bits (213), Expect = 2.1e-17
Identity = 47/97 (48.45%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 75  KLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREG 134
           KLFI GLS  TT++ L EAFS  GQ+VEA+++ DR + RSKGFGFVT+++ +EA+KA   
Sbjct: 35  KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94

Query: 135 MNAKFLDGWVIFVDPAKPRE----------PRPPPQP 162
            N + L+G  IFVD AK ++           R PP P
Sbjct: 95  FNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPDP 131

[Close]

BLAST of Clc04G08710 vs. TAIR 10
Match: AT1G18630.1 (glycine-rich RNA-binding protein 6 )

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-16
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 70  TLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAE 129
           +LT  K+F+ GLS  T  E L+EAF SFG++V+A V+ DR +G S+GFGFVTY +IE A 
Sbjct: 32  SLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVAN 91

Query: 130 KAREGMNAKFLDGWVIFVDPA 151
            A + M  K LDG +I V PA
Sbjct: 92  NAMQAMQNKELDGRIIGVHPA 112

[Close]

BLAST of Clc04G08710 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 83.2 bits (204), Expect = 2.4e-16
Identity = 56/137 (40.88%), Postives = 77/137 (56.20%), Query Frame = 0


Query: 39  RRVLNGSSSSSSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFG 98
           RR + G   SS  S+ SS      ++   SS+    KL++SGLS  TT++ L++ F  FG
Sbjct: 48  RRDIGGVLISSCLSTDSS------SSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFG 107

Query: 99  QLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREP--- 158
            L+   ++ D+   R KGF F+ Y T EEA KA +GM+ KFLDG VIFV+ AK R     
Sbjct: 108 NLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMSR 167

Query: 159 ----RPPPQPQSETSEF 169
               R  P+PQS+   F
Sbjct: 168 AKPRRDFPKPQSKPRTF 178

The following BLAST results are available for this feature:

BLAST of Clc04G08710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739912.1	1.6e-67	93.29	organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KAE8...	[more]
XP_022143719.1	8.0e-67	91.28	organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia]	[more]
XP_022972736.1	1.2e-65	90.13	organelle RRM domain-containing protein 2, mitochondrial [Cucurbita maxima]	[more]
XP_023517167.1	1.5e-65	92.05	organelle RRM domain-containing protein 2, mitochondrial [Cucurbita pepo subsp. ...	[more]
XP_008447620.1	1.5e-65	90.60	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]	[more]

BLAST of Clc04G08710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIU6	2.5e-23	55.32	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q9FFZ6	3.0e-16	48.45	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
Q9FZ84	2.0e-15	53.09	Glycine-rich RNA-binding protein 6, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9FX45	3.3e-15	40.88	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q99070	5.7e-15	50.63	Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1	[more]

BLAST of Clc04G08710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQ59	3.9e-67	91.28	organelle RRM domain-containing protein 2, mitochondrial OS=Momordica charantia ...	[more]
A0A6J1I6S8	5.6e-66	90.13	organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita maxima OX=...	[more]
A0A1S3BHV3	7.3e-66	90.60	glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1HDN1	9.6e-66	92.05	organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita moschata O...	[more]
A0A7N2LNA5	5.6e-58	79.19	RRM domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of Clc04G08710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37510.1	3.4e-47	68.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54580.1	1.8e-24	55.32	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	2.1e-17	48.45	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G18630.1	1.4e-16	53.09	glycine-rich RNA-binding protein 6	[more]
AT1G73530.1	2.4e-16	40.88	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 75..148 e-value: 4.5E-26 score: 102.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 76..142 e-value: 5.5E-20 score: 71.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 74..152 score: 18.393282
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 38..161 e-value: 9.1E-28 score: 99.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..180
None	No IPR available	PANTHER	PTHR15241:SF282	GLYCINE-RICH RNA-BINDING PROTEIN 6, MITOCHONDRIAL	coord: 32..180
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 32..180
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 73..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G08710.1	Clc04G08710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding