Clc04G08290 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G08290
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Subtilisin inhibitor-like
Location	ClcChr04: 22043533 .. 22045733 (-)
RNA-Seq Expression	Clc04G08290
Synteny	Clc04G08290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATAGAGAAATTCTTCTATAATTAAACCTTGGCTTATTATATAATATAATAGCTGCATCTCTTTGAGAGATTTTACTTCATATTTGGTAATTAGTTTGGATTATTTTCCTTCAAAATGGCTGAAGATTACCAAAAAATTAACAAAGCCCCTCAACAGCAGCAGCAGCAGCTTGAACCTGGGGAATCAGCAATGGCCAACACCTCTAGTAAGTTATTTTATTTTATTATTTTTACTATTTATACACTTTATTCTTGTAATGAATTAAAGACATGTGTGTGAGTATCTCAAATGGTTAAATTTGATCTTGAAAAAATTTGAAACATATAACCCTGATCTAGAGAGAGTAGAGGCTGTTTATGCCCTCACAATATTACTTTATAAATTCTTTAGGATGTCAAATGAAAATTGGGGTGTAATAACTTAGAATTGTGTGGCGATCTAAATTTTTGTTTTAGATCATTATTTGATACTTATATGTGTTTCATATATTTTAATTTTTATCTAATATTCTAAAGGATTTTTACTTAACGTGGTTTTGAAATGTTTAAAAATTTTTGTAACTTTACAAAGAATATGAGTATTTCTAAACAAGCACAAAAGTTAGAAGGTTGTTTGATTTATTTAGCCTAAAGAATAAGTGTTGAATAGCTAGGCAATTTAATATGAATATCAAAATATTGAAGTTTTGAAACTTAAACTACCTAATTATTATTAATATTATTTTTAGAATATGTGTTGCAAATATTAACTTGAGGGCAATTACCAAATGGGTTCATTGAGGTTTTATTTTATTTTTTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTATCATGAGGCCTGAATTTAGTTCTCAATTTTTGTTTCTTTCTAACTTCTCTATTATGGTTTTTTTTTCTATTTTGAAGAAATATTAAATTTTTTTTTTAATTCTAAAAATAAAAACAAGGTCTTAGACACTACAACTTGTATGATAATGGTTCTAGTTTTTCTTTTTTTTTTTTCTTTTTTTTTTAATTAAACTTATAAAGTTCTACTTTTCCATGTAGTTTTATTACTTTACCACCTATATTTTAAAAACGTTTTAAAATCTAAGCTAACTTTAAAAATGTTTTTAAAAATCTTGTATTATTTTTTAAATTTAGCTTAGAATTCAAAAGTATTCTTAAAGAATGTGAAAACCCGACTCAAAAATAAATTGTAAATAAACAAAACATAATTTCCAAAGAAAAAAAAAACAAAACCAAAATAATTATCAAAATTTTTTTTTTAATAGTTTTCATAATTTGACATGTTTTTTGAAAACATGAGGAGGAAAGTGAGGAGGAAAGTAGAAGCAATACTTATAAACTTAATTTTCAAAAATTAAAAACAAAAACCAAACAATTATCAAATGAGACTGAAGTATTGGAATATGGGTGGGAAAGAATTGAACGACTAACCTCAAAATTATAGTTAACTTTATATCAGTTGAACTATAATGTAGTTAGTCAGTCATAAAGTAAGTAATGGGGTATATAATGTGTAACAGAATTTGATGATAATAGCATGAGGGATCTAGTACGATCAATAACTATACACAAAGAACTGAAGGTAGGGGCTTCATTAGTGGGGTTGACAGTAGAAGAAGCAACGAAGAAGATAAAGGAAGAAGTGGGTGAAGAAGTTAAGATTGAGGTCATTCCAATGGGCTTTAGATCTTGCATCCACCGATGTAAGCCTGATCGTGTTAAGTTGAAGCTCGACTCTTCTGGCAGAGTTGTGAACACACCTTATATTGGCTAAAAATGTTTGTTCTCTATGATATTGTTAAGTAAGATGTTGCATCCTGTGATCATGTTTGTTGTTCGAAGTTTGTTTTGTGTAAGCGGGATGTATGTCACTCGATACGAGTGTATGCTAAACAAGCTGTTCTATTCATCTGTGTTAGAGTTTTGTGAGAGACTTGAGTATTTGATAGTTAAGAGCTATTCTCTAAACTATCTTGTAGTGAAGCAATCTTTATTGTGAGAGAAATTCGGGAGCCTAAGTTTCTCAAGTAAAAGGTACTTCTTATGAGACAAGCAAATATCAAAATTACAGTTAAGAGAGTCACAAACTTAGAGGGAGTCTAAGTTAGTATTCATTGTTTGTTAATCTCTGGAGATGTCTTCTTTTAATAGATAAGTACAACGTTGT

mRNA sequence

GAATAGAGAAATTCTTCTATAATTAAACCTTGGCTTATTATATAATATAATAGCTGCATCTCTTTGAGAGATTTTACTTCATATTTGGTAATTAGTTTGGATTATTTTCCTTCAAAATGGCTGAAGATTACCAAAAAATTAACAAAGCCCCTCAACAGCAGCAGCAGCAGCTTGAACCTGGGGAATCAGCAATGGCCAACACCTCTAAATTTGATGATAATAGCATGAGGGATCTAGTACGATCAATAACTATACACAAAGAACTGAAGGTAGGGGCTTCATTAGTGGGGTTGACAGTAGAAGAAGCAACGAAGAAGATAAAGGAAGAAGTGGGTGAAGAAGTTAAGATTGAGGTCATTCCAATGGGCTTTAGATCTTGCATCCACCGATGTAAGCCTGATCGTGTTAAGTTGAAGCTCGACTCTTCTGGCAGAGTTGTGAACACACCTTATATTGGCTAAAAATGTTTGTTCTCTATGATATTGTTAAGTAAGATGTTGCATCCTGTGATCATGTTTGTTGTTCGAAGTTTGTTTTGTGTAAGCGGGATGTATGTCACTCGATACGAGTGTATGCTAAACAAGCTGTTCTATTCATCTGTGTTAGAGTTTTGTGAGAGACTTGAGTATTTGATAGTTAAGAGCTATTCTCTAAACTATCTTGTAGTGAAGCAATCTTTATTGTGAGAGAAATTCGGGAGCCTAAGTTTCTCAAGTAAAAGGTACTTCTTATGAGACAAGCAAATATCAAAATTACAGTTAAGAGAGTCACAAACTTAGAGGGAGTCTAAGTTAGTATTCATTGTTTGTTAATCTCTGGAGATGTCTTCTTTTAATAGATAAGTACAACGTTGT

Coding sequence (CDS)

ATGGCTGAAGATTACCAAAAAATTAACAAAGCCCCTCAACAGCAGCAGCAGCAGCTTGAACCTGGGGAATCAGCAATGGCCAACACCTCTAAATTTGATGATAATAGCATGAGGGATCTAGTACGATCAATAACTATACACAAAGAACTGAAGGTAGGGGCTTCATTAGTGGGGTTGACAGTAGAAGAAGCAACGAAGAAGATAAAGGAAGAAGTGGGTGAAGAAGTTAAGATTGAGGTCATTCCAATGGGCTTTAGATCTTGCATCCACCGATGTAAGCCTGATCGTGTTAAGTTGAAGCTCGACTCTTCTGGCAGAGTTGTGAACACACCTTATATTGGCTAA

Protein sequence

MAEDYQKINKAPQQQQQQLEPGESAMANTSKFDDNSMRDLVRSITIHKELKVGASLVGLTVEEATKKIKEEVGEEVKIEVIPMGFRSCIHRCKPDRVKLKLDSSGRVVNTPYIG

Homology

[Close]

BLAST of Clc04G08290 vs. NCBI nr
Match: XP_038883936.1 (uncharacterized protein LOC120074766 [Benincasa hispida])

HSP 1 Score: 82.0 bits (201), Expect = 3.6e-12
Identity = 47/68 (69.12%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 48  KELKVGASLVGLTVEEATKKIKEEVGEEVKIEVIPMGFRSCIHR--CKPDRVKLKLDSSG 107
           KELKV  SLVGLTVEEATKKIKEE+GEEVKIEVIP G+ SC        DRVKL +DSSG
Sbjct: 94  KELKVAPSLVGLTVEEATKKIKEEMGEEVKIEVIPPGY-SCTQELPLSFDRVKLVVDSSG 153

Query: 108 RVVNTPYI 114
           +V+ TP +
Sbjct: 154 KVLVTPVL 160

[Close]

BLAST of Clc04G08290 vs. NCBI nr
Match: XP_038880794.1 (subtilisin inhibitor CLSI-I-like [Benincasa hispida])

HSP 1 Score: 61.6 bits (148), Expect = 5.0e-06
Identity = 50/114 (43.86%), Postives = 65/114 (57.02%), Query Frame = 0


Query: 1   MAEDYQKINKAPQQQQQQLEPGESAMANTSKFDDNSMRDLVRSITIHKELKVGASLVGLT 60
           MAED QK N APQ QQ     G+SA     K  +  M+      +++   K   SLVGLT
Sbjct: 1   MAEDNQKTN-APQDQQL----GKSATVIIPKSYEEFMQLFQPKTSVN---KAWPSLVGLT 60

Query: 61  VEEATKKIKEEVGEEVKIEVIPMGFRSCIHRCKPDRVKLKLDSSGRVVNTPYIG 115
            EEA KKIKEE+  EV + V+P  + +     + +RV L +DSSG+VV TP IG
Sbjct: 61  AEEAEKKIKEEMA-EVYVSVVPPSY-AITFDLRSNRVWLFVDSSGKVVQTPVIG 104

[Close]

BLAST of Clc04G08290 vs. ExPASy TrEMBL
Match: A0A0A0KX92 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296240 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 6.6e-04
Identity = 50/115 (43.48%), Postives = 65/115 (56.52%), Query Frame = 0


Query: 1   MAEDYQKINKAPQQQQQQLEPGESAMANTSKFDDNSMRDLVRSITIH-KELKVGASLVGL 60
           M ED QK +KAPQ Q    + GES    T+     S ++L++       E KV  SLVGL
Sbjct: 1   MGEDNQK-SKAPQYQ----KVGES----TTSIIPKSYKELMQLFQPEPPENKVWPSLVGL 60

Query: 61  TVEEATKKIKEEVGEEVKIEVIPMGFRSCIHRCKPDRVKLKLDSSGRVVNTPYIG 115
           T EEA KKIKEE+  EV + V+P    +     + +RV L +DSSG+V  TP IG
Sbjct: 61  TAEEAEKKIKEEM-PEVYVTVVPPN-HAITFDLRFNRVWLFVDSSGKVRQTPSIG 104

[Close]

BLAST of Clc04G08290 vs. ExPASy TrEMBL
Match: A0A2Z7B1K5 (Subtilisin inhibitor-like OS=Dorcoceras hygrometricum OX=472368 GN=F511_24693 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.6e-04
Identity = 28/60 (46.67%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 56  LVGLTVEEATKKIKEEVGEEVKIEVIPM-GFRSCIHRCKPDRVKLKLDSSGRVVNTPYIG 115
           +VGLT +EA++KIKEE+GE ++I V+P   F +  +R   DRV++ +DS+G+V + P IG
Sbjct: 38  VVGLTADEASRKIKEEMGEGIRIHVVPSDSFITMDYR--TDRVRIFVDSTGKVCSPPTIG 95

The following BLAST results are available for this feature:

BLAST of Clc04G08290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883936.1	3.6e-12	69.12	uncharacterized protein LOC120074766 [Benincasa hispida]	[more]
XP_038880794.1	5.0e-06	43.86	subtilisin inhibitor CLSI-I-like [Benincasa hispida]	[more]

BLAST of Clc04G08290 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc04G08290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KX92	6.6e-04	43.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296240 PE=3 SV=1	[more]
A0A2Z7B1K5	8.6e-04	46.67	Subtilisin inhibitor-like OS=Dorcoceras hygrometricum OX=472368 GN=F511_24693 PE...	[more]

BLAST of Clc04G08290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.10.10	Trypsin Inhibitor V, subunit A	coord: 54..114 e-value: 5.7E-8 score: 35.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..34
IPR000864	Proteinase inhibitor I13, potato inhibitor I	PFAM	PF00280	potato_inhibit	coord: 56..114 e-value: 4.0E-7 score: 30.6
IPR036354	Proteinase inhibitor I13, potato inhibitor I superfamily	SUPERFAMILY	54654	CI-2 family of serine protease inhibitors	coord: 56..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G08290.1	Clc04G08290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009611	response to wounding
molecular_function	GO:0004867	serine-type endopeptidase inhibitor activity