Clc04G08230 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G08230
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Legume-specific protein
Location	ClcChr04: 21978404 .. 21981091 (-)
RNA-Seq Expression	Clc04G08230
Synteny	Clc04G08230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGTCTGATTCCATTCCTTTACAAAGCTATTTTACAGTATAGAAATGGCAATAATGAAACTTCTTCATGGTGTTGTGATGAGTCTTCTTCTTCTTCTTCTTCTTCAGAAGCTTTATATGTAAGACTTGCAGGTGATGATCAAGACTACATCATTAATAATCCTCCATTTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCAAATGGCAGCAGCAGTGTCATCATATCAACTGATAATTCTGGGATTCAATCTCCTCTCTGTCGTTTGCTTTCCAATCGAGTTGCTGCTTGAAAGGAACAATATTGAAGTTTTTTTTTTATTTTTTTATTTTTTTTATTTTTTAAAATAGTTATGTTGATGGTTTTAATTATTTGTTGTGGTTGTGTCTTGGTTTTGGAAGTAATTAAAAGGGTTGTGAATGTGTGAAGAAAGAGACCTCCAAAGGGAGAATTGTGTTTGTGTGTAGCCTAAAAATGGAGTGTGTTGTCAATTGTTAATATATAGTGTGTGGTTGTGATTAATATAATTAATTGTTAATGAAAGTTTGATTTGATCTCTCAAAAGTTGTAAAGCCCAAAAGGGCAAAACGGGCATGTGTGCTGAAAAATATTCAAACAGTTGGTATTTTGAATTCTAAAATGAAAACTGTCTAACTTTTTTAAAATAGTGGTAATTAATCTTTTGTTGACATGATTATGGATGAGGGAAGTTACAGATTTACCCTTCCTTTTCTTTTTTTTCTTTTCTTTCCTTCTTCTTCTCTTCTCTTCTCTAGCGAGCAACCATATTAGATCTATCAAACACGAACTTGAGCATGCTGGTAGCGAGCACCCAAATGTTGGATAGCGAGACTAGGAGAGAGCAAGAGGGAGGAGAGTGATCCGTTTGAGAGGAGAATGATTTGTGAGAGAGGAGAGCAGTCTGTGAGAGAAGGAAAGGGAACGATAGAGAGAGAAGAGCGAAAGAACGAACATCGAGATTGGTCATTCTACGTGCGCGCGAGGGTTTCATTTTGTAATTTCACCTAGTGTCGATGTTAGCAAAGGGTAAAAAAACCTTCATTTTAAAAAAAGCCAGGAAATTTTTTTTTCCCTCTCAATTTGGATCATCCGTACTAAAACCCTACGTGTATTGGTGGTTACTTAAAAAAAAAAAAAACATTTTTTTTGAGGTAAGTATTTTTGTTATGTTATGAAAATCCACTAGAAGCAACCAACCGTATTGTCTGCACCAACTACCATTTAGCTAATAAGCTCGTGAATATCGAGGTTCCACAAGTAGTACTTTTTGATACTGTATTTGAAGCATTGTTCGAATTCTTTATAATATGTAACTTAAACAAGTTATTGCAAATGGTAAAAAGGGCCGTTTTGAATGTGGGGCTGTTTGAATTAGCCCTTCCATCGTATTTCTCCTGAAATTAAAGAAAAGATGGACAAAAACTTATGTTTAAGCTAAATTAACCGGAGTTGCTTGTTTGGATTTAACTTAATATCTTAAATCCACGATTTAAGATTGGTTACTAAATAATAGTTATAATAATTTCCATTTCCATTTTTCTTACTTTTAAGTTTAAAGTGTCTACCTATTTAAGTCCGGTAAAATATATAAATTTCAAAAAAAAAAAAAAAAAAAAAAAAAGAAATACTTGTAAAAAGAAATAACCACTTTTGGGTGGAATGCTAAATTAATTTTCTTTTTCATCTCATTTACTTGTTCAATGATTGTCTTCAACTTATATGATTCTGAAGATTGCTTACTAGTAATTGATCACATTATATTTTTTCCTTTCATTAAAGGTCCGTTCACACTTTTATTGTACAAGAAATAAAAATCATTTTCATAATTAGCATTTAGTAGTAAGATCCACATACTCAAAACCTATACCATTAATTTGTTAAAAACATGATAAAAGTATAAACTAAAATGATTATTTTTTACAACTTCGAGAACTAAAATAGATATTTTAAATGTTTTGGAGTTAATTTAGAACAAATCTGATACTTCAAAGGCCAAAATAAACATTTTAAATGTTTAGAAACCAAATCAGAACATACTTGAAAATTTTAGAGGCTAAAATATATGAGATCTAAACCCTTTTCTCTTAAATACAATAAATGTGTGCAAAAGGATTTTTTTTTTCTTTTTTTTTTTTTAAAGATCACAATGAAATTTGGATACATTAAAAAAATAATAGTTAAACATCAACTTTTGAAATAGTAATATAAAGAGAGATGAGAAATCAAGCGAGGTAGGTAGAAAAAAGAGATTCAAGCAACGAACTACATAGTACGAGATTGAACATTGACCTAAAAGATGTAATAAAAAAAGGTTGGTATTCAACCAGATTTTGAAGAAATTTAATTCGTAGAATTTGAAATTTGCATTTCTATTAATTTCAATACAATATATTGAATACAATCTCTAATAAATGGTCCTTTGATGCTTTCTATCGAAAAGTAAACTTTAATCATTGCGCTTGTTGATCTTTTTGAATGATCAACCTTTGGACTTGATGATTTTTTTGGATGATAAGACTTTGGGCTTGTTGATCTTCTTGGATCATCAACTTTTAGACTTGATGATTTTTCTGGAGGATTGGTTTTTAGGCTTGATGATCTTCTTGGTTCAGCTTCTGACTTGTTAATTGCCTTGGGTCAGCTTCTAGCTTGTCAATTGCCTTAG

mRNA sequence

ATGGAGGGTCTGATTCCATTCCTTTACAAAGCTATTTTACAGTATAGAAATGGCAATAATGAAACTTCTTCATGGTGTTGTGATGAGTCTTCTTCTTCTTCTTCTTCTTCAGAAGCTTTATATGTAAGACTTGCAGGTGATGATCAAGACTACATCATTAATAATCCTCCATTTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCAAATGGCAGCAGCAGTGTCATCATATCAACTGATAATTCTGGGATTCAATCTCCTCTCTGTCACTTTGGGCTTGTTGATCTTCTTGGATCATCAACTTTTAGACTTGATGATTTTTCTGGAGGATTGGTTTTTAGGCTTGATGATCTTCTTGGTTCAGCTTCTGACTTGTTAATTGCCTTGGGTCAGCTTCTAGCTTGTCAATTGCCTTAG

Coding sequence (CDS)

ATGGAGGGTCTGATTCCATTCCTTTACAAAGCTATTTTACAGTATAGAAATGGCAATAATGAAACTTCTTCATGGTGTTGTGATGAGTCTTCTTCTTCTTCTTCTTCTTCAGAAGCTTTATATGTAAGACTTGCAGGTGATGATCAAGACTACATCATTAATAATCCTCCATTTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCAAATGGCAGCAGCAGTGTCATCATATCAACTGATAATTCTGGGATTCAATCTCCTCTCTGTCACTTTGGGCTTGTTGATCTTCTTGGATCATCAACTTTTAGACTTGATGATTTTTCTGGAGGATTGGTTTTTAGGCTTGATGATCTTCTTGGTTCAGCTTCTGACTTGTTAATTGCCTTGGGTCAGCTTCTAGCTTGTCAATTGCCTTAG

Protein sequence

MEGLIPFLYKAILQYRNGNNETSSWCCDESSSSSSSSEALYVRLAGDDQDYIINNPPFSSSSSSSSSSNGSSSVIISTDNSGIQSPLCHFGLVDLLGSSTFRLDDFSGGLVFRLDDLLGSASDLLIALGQLLACQLP

Homology

[Close]

BLAST of Clc04G08230 vs. NCBI nr
Match: KGN54276.1 (hypothetical protein Csa_018169 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 1.6e-19
Identity = 72/106 (67.92%), Postives = 77/106 (72.64%), Query Frame = 0


Query: 1   MEGLIPFLYKAILQYRNGNNET---------SSWCCD----ESSSSSSSSEALYVRLAGD 60
           MEGLIPFLYKAILQY+NGN+ET         S W CD       SSSSSSEALYVRLAGD
Sbjct: 1   MEGLIPFLYKAILQYKNGNSETNNNNMNQPSSYWWCDADHQSPPSSSSSSEALYVRLAGD 60

Query: 61  DQDYI----INNPPFSSSSSSSSSSNGSSSVIISTDNSGIQSPLCH 90
           DQDYI     NN PF SSSSSSS+ N + SVIIS+ NSGIQSPLCH
Sbjct: 61  DQDYINTNTNNNLPF-SSSSSSSTFNDTKSVIISS-NSGIQSPLCH 104

[Close]

BLAST of Clc04G08230 vs. NCBI nr
Match: KAG6595338.1 (hypothetical protein SDJN03_11891, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.3 bits (207), Expect = 8.7e-13
Identity = 52/93 (55.91%), Postives = 64/93 (68.82%), Query Frame = 0


Query: 1  MEGLIPFLYKAILQYRNGNNETSSWCCDESSSSSSSSEALYVRLAGDDQD-YIINNPPFS 60
          MEGLIPF+YKAI+++RNGNN  + WCCD  SS+S      Y RL GDD + + IN    S
Sbjct: 1  MEGLIPFVYKAIVEFRNGNNSQTMWCCDSPSSAS------YQRLPGDDDELHNINGASSS 60

Query: 61 SSSSSSSSSNGSSSVIISTDNSGI-QSPLCHFG 92
          SSSSSSSSS+ SSS  +    SG+ QSPLC+ G
Sbjct: 61 SSSSSSSSSSSSSSDSVLISGSGVDQSPLCNGG 87

[Close]

BLAST of Clc04G08230 vs. NCBI nr
Match: KAG7027348.1 (hypothetical protein SDJN02_11360, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.4 bits (202), Expect = 3.3e-12
Identity = 54/98 (55.10%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 1  MEGLIPFLYKAILQYRNGNNETSSWCCDESSSSSSSSEALYVRLAGDDQD-YIINNPPFS 60
          MEGLIPF+YKAI+++RNGNN  + WCCD  SS+S      Y RL GDD + + IN    S
Sbjct: 1  MEGLIPFVYKAIVEFRNGNNNQTMWCCDSPSSAS------YQRLPGDDDELHNINGASSS 60

Query: 61 SSSSSSSSSNGSSSVIISTDN-----SGI-QSPLCHFG 92
          SSSSSSSSS+ SSS   S+D+     SG+ QSPLC+ G
Sbjct: 61 SSSSSSSSSSSSSSSSSSSDSVLISGSGVDQSPLCNGG 92

[Close]

BLAST of Clc04G08230 vs. NCBI nr
Match: KAG7033819.1 (hypothetical protein SDJN02_03544, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG7033820.1 hypothetical protein SDJN02_03545, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 72.0 bits (175), Expect = 4.5e-09
Identity = 51/90 (56.67%), Postives = 58/90 (64.44%), Query Frame = 0


Query: 1  MEGLIPFLYKAILQYRNGNNETS---SWCCDESSSSSSSSEALYVRLAGDDQDYIINNPP 60
          MEGLIPFLYKAI+ YRNG N+     SW CDES S+S+S    YVRLAGD+QD       
Sbjct: 1  MEGLIPFLYKAIVHYRNGYNQADSQPSWRCDESPSASAS----YVRLAGDEQD------- 60

Query: 61 FSSSSSSSSSSNGSSSVIISTDNSGIQSPL 88
             S+SSSS SNGS    +    SGIQSPL
Sbjct: 61 ---SASSSSFSNGS----VRISASGIQSPL 72

[Close]

BLAST of Clc04G08230 vs. NCBI nr
Match: KAG6603637.1 (hypothetical protein SDJN03_04246, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.0 bits (175), Expect = 4.5e-09
Identity = 51/90 (56.67%), Postives = 58/90 (64.44%), Query Frame = 0


Query: 1  MEGLIPFLYKAILQYRNGNNETS---SWCCDESSSSSSSSEALYVRLAGDDQDYIINNPP 60
          MEGLIPFLYKAI+ YRNG N+     SW CDES S+S+S    YVRLAGD+QD       
Sbjct: 1  MEGLIPFLYKAIVHYRNGYNQADSQPSWRCDESPSASAS----YVRLAGDEQD------- 60

Query: 61 FSSSSSSSSSSNGSSSVIISTDNSGIQSPL 88
             S+SSSS SNGS    +    SGIQSPL
Sbjct: 61 ---SASSSSFSNGS----VRISASGIQSPL 72

[Close]

BLAST of Clc04G08230 vs. ExPASy TrEMBL
Match: A0A0A0L2A8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296290 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 7.9e-20
Identity = 72/106 (67.92%), Postives = 77/106 (72.64%), Query Frame = 0


Query: 1   MEGLIPFLYKAILQYRNGNNET---------SSWCCD----ESSSSSSSSEALYVRLAGD 60
           MEGLIPFLYKAILQY+NGN+ET         S W CD       SSSSSSEALYVRLAGD
Sbjct: 1   MEGLIPFLYKAILQYKNGNSETNNNNMNQPSSYWWCDADHQSPPSSSSSSEALYVRLAGD 60

Query: 61  DQDYI----INNPPFSSSSSSSSSSNGSSSVIISTDNSGIQSPLCH 90
           DQDYI     NN PF SSSSSSS+ N + SVIIS+ NSGIQSPLCH
Sbjct: 61  DQDYINTNTNNNLPF-SSSSSSSTFNDTKSVIISS-NSGIQSPLCH 104

[Close]

BLAST of Clc04G08230 vs. ExPASy TrEMBL
Match: A0A151THI9 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_012816 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.4e-05
Identity = 40/87 (45.98%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 1  MEGLIPFLYKAILQYRNG-NNETSSWCCDESSSSSSSSEALYVRLAGDDQDYIINNPPFS 60
          MEGLIPF+YKAI+QY++G      SW CD  S S       Y+RL GD   + I  P FS
Sbjct: 1  MEGLIPFVYKAIMQYKSGKEGPIGSWICDSPSYS-------YMRLPGDSGRFQIQAPSFS 60

Query: 61 SSSSSSSSSNGSSSVIISTDNSGIQSP 87
          + S+S SS+N +++ II   +S +QSP
Sbjct: 61 APSASPSSNNHATTQIIV--SSSVQSP 78

[Close]

BLAST of Clc04G08230 vs. ExPASy TrEMBL
Match: A0A0L9VTE1 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan11g124200 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.5e-05
Identity = 42/96 (43.75%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 1  MEGLIPFLYKAILQYRNG-NNETSSWCCDESSSSSSSSEALYVRLAGDDQDY------II 60
          MEGLIPF+YKAI+QY+NG      SW CD SS S       Y++L GD   +      + 
Sbjct: 1  MEGLIPFVYKAIMQYKNGRQGPIVSWLCDSSSYS-------YMKLPGDSGRFQTSASSLF 60

Query: 61 NNPPFSSSSSSSSSSNGSSSVIISTDNSGIQSPLCH 90
           +    SS+SSSSSS   SS      +S +QSP CH
Sbjct: 61 GSEYVLSSTSSSSSSKPGSSTTQIMFSSSVQSPSCH 89

[Close]

BLAST of Clc04G08230 vs. ExPASy TrEMBL
Match: A0A0S3SWE1 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.09G055500 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.5e-05
Identity = 42/96 (43.75%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 1  MEGLIPFLYKAILQYRNG-NNETSSWCCDESSSSSSSSEALYVRLAGDDQDY------II 60
          MEGLIPF+YKAI+QY+NG      SW CD SS S       Y++L GD   +      + 
Sbjct: 1  MEGLIPFVYKAIMQYKNGRQGPIVSWLCDSSSYS-------YMKLPGDSGRFQTSASSLF 60

Query: 61 NNPPFSSSSSSSSSSNGSSSVIISTDNSGIQSPLCH 90
           +    SS+SSSSSS   SS      +S +QSP CH
Sbjct: 61 GSEYVLSSTSSSSSSKPGSSTTQIMFSSSVQSPSCH 89

[Close]

BLAST of Clc04G08230 vs. ExPASy TrEMBL
Match: A0A2R4NA37 (Legume-specific protein OS=Aeschynomene sp. (328) OX=2049001 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.2e-05
Identity = 46/95 (48.42%), Postives = 58/95 (61.05%), Query Frame = 0


Query: 1  MEGLIPFLYKAILQYRNGN-NETSSWCCDESSSSSSSSEALYVRLAGDDQDYIINNPPFS 60
          MEGLIPF+YKAI+QY+NGN     +W C+  S S       YVRL GD   +     P S
Sbjct: 1  MEGLIPFVYKAIMQYKNGNEGAIGTWICESPSYS-------YVRLPGDSGRF---QTPAS 60

Query: 61 SSSSS--SSSSNGSSSVIISTDNSGIQSPLCHFGL 93
           S+S+  SSSS+ S+ VI+S   SG+QSP  H GL
Sbjct: 61 CSASTPPSSSSSSSAQVIVS---SGVQSP--HQGL 80

[Close]

BLAST of Clc04G08230 vs. TAIR 10
Match: AT2G37750.1 (unknown protein; Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 7.8e-04
Identity = 34/88 (38.64%), Postives = 49/88 (55.68%), Query Frame = 0


Query: 1  MEGLIPFLYKAILQYRNGNNETSSWCCDESSSSSSSSEALYVRLAGDDQDYIINNPPFSS 60
          MEGLIP +YKA++Q R GN         ES   SSS    YVRL GD   ++ ++   S 
Sbjct: 1  MEGLIPLVYKAVMQIRYGN---------ESQQLSSS---YYVRLPGDSGRFVRSDLDVSG 60

Query: 61 -SSSSSSSSNGSSSVIISTDNSGIQSPL 88
            S+SS+ ++ S+S       +G+QSP+
Sbjct: 61 PGSNSSNRASSSTSTTTFAVYAGVQSPV 76

The following BLAST results are available for this feature:

BLAST of Clc04G08230 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54276.1	1.6e-19	67.92	hypothetical protein Csa_018169 [Cucumis sativus]	[more]
KAG6595338.1	8.7e-13	55.91	hypothetical protein SDJN03_11891, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7027348.1	3.3e-12	55.10	hypothetical protein SDJN02_11360, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7033819.1	4.5e-09	56.67	hypothetical protein SDJN02_03544, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6603637.1	4.5e-09	56.67	hypothetical protein SDJN03_04246, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Clc04G08230 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc04G08230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2A8	7.9e-20	67.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296290 PE=4 SV=1	[more]
A0A151THI9	1.4e-05	45.98	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_012816 PE=4 SV=1	[more]
A0A0L9VTE1	2.5e-05	43.75	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan11g124200 PE...	[more]
A0A0S3SWE1	2.5e-05	43.75	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.09G...	[more]
A0A2R4NA37	3.2e-05	48.42	Legume-specific protein OS=Aeschynomene sp. (328) OX=2049001 PE=4 SV=1	[more]

BLAST of Clc04G08230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37750.1	7.8e-04	38.64	unknown protein; Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..74
None	No IPR available	PANTHER	PTHR34670:SF8	EXPRESSED PROTEIN	coord: 1..90
None	No IPR available	PANTHER	PTHR34670	EXPRESSED PROTEIN	coord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G08230.2	Clc04G08230.2	mRNA