Clc04G07210 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G07210
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	BHLH domain-containing protein
Location	ClcChr04: 20873044 .. 20873801 (+)
RNA-Seq Expression	Clc04G07210
Synteny	Clc04G07210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGTATCCAAGGGCAGAGATCGGCTGACTCATATGACGACATCTCTCTTTCTTTCTCTTCATTATATATATATATAAGCTAATATATATATAAAAAAAAAAAGGAAAAACCTACCACTCATTTCCATGTACCCAAAATTTGAATCTCACTTTGTTTCTCCATAATGGATTACAACTTGCCGGCGAGCAACCCCAGCTCGTGTGGTTCATCCTCCGGCGGCGGCAGCGGTGGAAAGGAGAAGATGAAAAAGAACACCAACGGCAGCGGAGGGAAGAGGAGCAAAGGGGTTGTGAAGCTCTCAACAGACCCACAAAGCGTGGCGGCAAGAGAACGGCGGCATAGAATCAGCGACCGGTTCAAGATTTTGCAGAGCTTAGTTCCTGGCGGTACTAAAATGGACACCGTTTCAATGCTTGACGAAGCCATTCATTATGTCAAGTTCTTAAAAACCCAGATTTGGCTTCATCAAACCATGATTAATTTCGTTGATTCTGATCCTTCTTCCGTCGCCGCCGCTGCCGCCACCGCTGCCAATTCCGGTCTCCCTTTTGACCAAATTGCCGGCGGCGAGTATAACAACAACATGAATTTCCTCTACCCTCAAAACGACGTCGTTAAAATGGAGGAGCCTTTCTTGCCTCAGCTTGATCCCAACAATAATAATAGTAATCTTTATTTCCCTTCTGATCAAGACCAATTCATCTCCTCTTCTTATGATCCTTACATCAACTTCTAGGGCCTTTTTCCTTCTATTTTTT

mRNA sequence

CCGTATCCAAGGGCAGAGATCGGCTGACTCATATGACGACATCTCTCTTTCTTTCTCTTCATTATATATATATATAAGCTAATATATATATAAAAAAAAAAAGGAAAAACCTACCACTCATTTCCATGTACCCAAAATTTGAATCTCACTTTGTTTCTCCATAATGGATTACAACTTGCCGGCGAGCAACCCCAGCTCGTGTGGTTCATCCTCCGGCGGCGGCAGCGGTGGAAAGGAGAAGATGAAAAAGAACACCAACGGCAGCGGAGGGAAGAGGAGCAAAGGGGTTGTGAAGCTCTCAACAGACCCACAAAGCGTGGCGGCAAGAGAACGGCGGCATAGAATCAGCGACCGGTTCAAGATTTTGCAGAGCTTAGTTCCTGGCGGTACTAAAATGGACACCGTTTCAATGCTTGACGAAGCCATTCATTATGTCAAGTTCTTAAAAACCCAGATTTGGCTTCATCAAACCATGATTAATTTCGTTGATTCTGATCCTTCTTCCGTCGCCGCCGCTGCCGCCACCGCTGCCAATTCCGGTCTCCCTTTTGACCAAATTGCCGGCGGCGAGTATAACAACAACATGAATTTCCTCTACCCTCAAAACGACGTCGTTAAAATGGAGGAGCCTTTCTTGCCTCAGCTTGATCCCAACAATAATAATAGTAATCTTTATTTCCCTTCTGATCAAGACCAATTCATCTCCTCTTCTTATGATCCTTACATCAACTTCTAGGGCCTTTTTCCTTCTATTTTTT

Coding sequence (CDS)

ATGGATTACAACTTGCCGGCGAGCAACCCCAGCTCGTGTGGTTCATCCTCCGGCGGCGGCAGCGGTGGAAAGGAGAAGATGAAAAAGAACACCAACGGCAGCGGAGGGAAGAGGAGCAAAGGGGTTGTGAAGCTCTCAACAGACCCACAAAGCGTGGCGGCAAGAGAACGGCGGCATAGAATCAGCGACCGGTTCAAGATTTTGCAGAGCTTAGTTCCTGGCGGTACTAAAATGGACACCGTTTCAATGCTTGACGAAGCCATTCATTATGTCAAGTTCTTAAAAACCCAGATTTGGCTTCATCAAACCATGATTAATTTCGTTGATTCTGATCCTTCTTCCGTCGCCGCCGCTGCCGCCACCGCTGCCAATTCCGGTCTCCCTTTTGACCAAATTGCCGGCGGCGAGTATAACAACAACATGAATTTCCTCTACCCTCAAAACGACGTCGTTAAAATGGAGGAGCCTTTCTTGCCTCAGCTTGATCCCAACAATAATAATAGTAATCTTTATTTCCCTTCTGATCAAGACCAATTCATCTCCTCTTCTTATGATCCTTACATCAACTTCTAG

Protein sequence

MDYNLPASNPSSCGSSSGGGSGGKEKMKKNTNGSGGKRSKGVVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDSDPSSVAAAAATAANSGLPFDQIAGGEYNNNMNFLYPQNDVVKMEEPFLPQLDPNNNNSNLYFPSDQDQFISSSYDPYINF

Homology

[Close]

BLAST of Clc04G07210 vs. NCBI nr
Match: XP_038883835.1 (transcription factor LAX PANICLE 1 [Benincasa hispida])

HSP 1 Score: 320.5 bits (820), Expect = 1.0e-83
Identity = 175/194 (90.21%), Postives = 176/194 (90.72%), Query Frame = 0


Query: 1   MDYNLPASNPSSCGSSSGGGSGGKEKMKKNTNGSGGKRSKGVVKLSTDPQSVAARERRHR 60
           MDYN P SNPSSCGSSSGG  GGKEKMKKN N  GGKRSKGVVKLSTDPQSVAARERRHR
Sbjct: 1   MDYNFPTSNPSSCGSSSGG--GGKEKMKKNINNGGGKRSKGVVKLSTDPQSVAARERRHR 60

Query: 61  ISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDSDPSSVAAAAA 120
           ISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVD DPSS  A AA
Sbjct: 61  ISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDPSS--ATAA 120

Query: 121 TAANSGLPFDQIAGGEYNNNMNFLYPQNDVVKMEEP-FLPQLDP--NNNNSNLYFPSD-Q 180
            AANSGLPFDQIAGGEYNNNMNFL  QNDVVKMEEP FLPQLDP  NNNN+NLYFPSD Q
Sbjct: 121 AAANSGLPFDQIAGGEYNNNMNFLCSQNDVVKMEEPNFLPQLDPNYNNNNNNLYFPSDHQ 180

Query: 181 DQFISSSYDPYINF 191
           DQFISSSYDPYINF
Sbjct: 181 DQFISSSYDPYINF 190

[Close]

BLAST of Clc04G07210 vs. NCBI nr
Match: KAA0037736.1 (HLH domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 307.0 bits (785), Expect = 1.1e-79
Identity = 170/196 (86.73%), Postives = 173/196 (88.27%), Query Frame = 0


Query: 1   MDYNLPASNPSSCGSSSGGGSGGKEKMKKNTN---GSGGKRSKGVVKLSTDPQSVAARER 60
           MDYN PASNPSSCGSSSGGG GGKEKMKKN N   G  GKRSKGVVKLSTDPQSVAARER
Sbjct: 1   MDYNFPASNPSSCGSSSGGG-GGKEKMKKNNNNNHGGAGKRSKGVVKLSTDPQSVAARER 60

Query: 61  RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDSDP-SSVA 120
           RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVD D  SS A
Sbjct: 61  RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNSSAA 120

Query: 121 AAAATAANSGLPFDQIAGGEYNNNMNFLYPQNDVVKMEEP-FLPQLDPNNNNSNLYFPSD 180
            +AA  ANSG PF+QIA GEYNN  N LYPQNDVVKMEEP FLPQLDPNNNN N+YFPSD
Sbjct: 121 VSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNN-NVYFPSD 180

Query: 181 -QDQFISSSYDPYINF 191
            QDQFISSSYDPYINF
Sbjct: 181 HQDQFISSSYDPYINF 194

[Close]

BLAST of Clc04G07210 vs. NCBI nr
Match: XP_031739731.1 (transcription factor bHLH140 [Cucumis sativus] >KGN54395.1 hypothetical protein Csa_018056 [Cucumis sativus])

HSP 1 Score: 307.0 bits (785), Expect = 1.1e-79
Identity = 170/196 (86.73%), Postives = 173/196 (88.27%), Query Frame = 0


Query: 1   MDYNLPASNPSSCGSSS-GGGSGGKEKMKKNTN--GSGGKRSKGVVKLSTDPQSVAARER 60
           MDYN PASNPSSCGSSS GGG GGKEKMKKN N  G  GKRSKGVVKLSTDPQSVAARER
Sbjct: 1   MDYNFPASNPSSCGSSSGGGGGGGKEKMKKNNNNHGGAGKRSKGVVKLSTDPQSVAARER 60

Query: 61  RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDSDP-SSVA 120
           RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVD D  SS A
Sbjct: 61  RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNSSAA 120

Query: 121 AAAATAANSGLPFDQIAGGEYNNNMNFLYPQNDVVKMEEP-FLPQLDPNNNNSNLYFPSD 180
            +AA  ANSG PF+QIA GEYNN  N LYPQNDVVKMEEP FLPQLDPNNNN N+YFPSD
Sbjct: 121 VSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNN-NVYFPSD 180

Query: 181 -QDQFISSSYDPYINF 191
            QDQFISSSYDPYINF
Sbjct: 181 HQDQFISSSYDPYINF 195

[Close]

BLAST of Clc04G07210 vs. NCBI nr
Match: TYK10925.1 (HLH domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 301.6 bits (771), Expect = 4.8e-78
Identity = 168/196 (85.71%), Postives = 171/196 (87.24%), Query Frame = 0


Query: 1   MDYNLPASNPSSCGSSSGGGSGGKEKMKKNTN---GSGGKRSKGVVKLSTDPQSVAARER 60
           MDYN PASNPSSCGSSSGGG GGKEKMKKN N   G  GKRSKGVVKLSTDPQSVAARER
Sbjct: 1   MDYNFPASNPSSCGSSSGGG-GGKEKMKKNNNNNHGGAGKRSKGVVKLSTDPQSVAARER 60

Query: 61  RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDSDP-SSVA 120
           RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVD D  SS A
Sbjct: 61  RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNSSAA 120

Query: 121 AAAATAANSGLPFDQIAGGEYNNNMNFLYPQNDVVKMEEP-FLPQLDPNNNNSNLYFPSD 180
            +AA  ANSG PF+QIA GEYNN  N LYPQNDVVKMEEP FLPQLDPNNNN N+YFPSD
Sbjct: 121 VSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNN-NVYFPSD 180

Query: 181 -QDQFISSSYDPYINF 191
            QDQFISSSYDPY  F
Sbjct: 181 HQDQFISSSYDPYXFF 194

[Close]

BLAST of Clc04G07210 vs. NCBI nr
Match: XP_022931869.1 (transcription factor bHLH140 [Cucurbita moschata])

HSP 1 Score: 280.8 bits (717), Expect = 8.8e-72
Identity = 156/198 (78.79%), Postives = 168/198 (84.85%), Query Frame = 0


Query: 1   MDYNLPASNPSSCGSSSGGGSGG---KEKMKKNTNGS-GGKRSKGVVKLSTDPQSVAARE 60
           MDY  PASNPSSCGSSSGG + G   KEK+KKN++GS GGKRSKGVVKLSTDPQSVAARE
Sbjct: 1   MDYTFPASNPSSCGSSSGGATTGATRKEKLKKNSSGSCGGKRSKGVVKLSTDPQSVAARE 60

Query: 61  RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDSDPSSVA 120
           RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVD D SS +
Sbjct: 61  RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDSSNS 120

Query: 121 AAAATAANSGLPFDQIAGGEYNNN--MNFLYPQNDVVKMEEP--FLPQLDPNNNNSNLYF 180
            AAA A N G  FDQIAGGE++NN   +F+Y QNDVVKMEEP   LPQLDPN    NLYF
Sbjct: 121 TAAAAAVNCGFHFDQIAGGEFHNNDTNSFVYSQNDVVKMEEPPNLLPQLDPN----NLYF 180

Query: 181 PSDQDQFISSSYDPYINF 191
           PS QDQ++ SSYDPY+NF
Sbjct: 181 PSGQDQYMCSSYDPYMNF 194

[Close]

BLAST of Clc04G07210 vs. ExPASy Swiss-Prot
Match: Q9M041 (Transcription factor bHLH140 OS=Arabidopsis thaliana OX=3702 GN=BHLH140 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.4e-26
Identity = 68/122 (55.74%), Postives = 85/122 (69.67%), Query Frame = 0


Query: 2   DYNLPASNPSSCGSSSGGGSGGKEKMKKNTNGSGGKRSKGVVKLSTDPQSVAARERRHRI 61
           D+NL + NP+S  S++   S    + K  T  +  KRS+    LSTDPQSVAAR+RRHRI
Sbjct: 3   DFNLRSENPNS-SSTTSSSSSSFHRHKSETGNT--KRSRSTSTLSTDPQSVAARDRRHRI 62

Query: 62  SDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDSDPSSVAAAAAT 121
           SDRFKILQS+VPGG KMDTVSMLDEAI YVKFLK QIW HQ M+ F++   ++ +   + 
Sbjct: 63  SDRFKILQSMVPGGAKMDTVSMLDEAISYVKFLKAQIWYHQNMLLFINDHETTSSCTYSP 121

Query: 122 AA 124
            A
Sbjct: 123 GA 121

[Close]

BLAST of Clc04G07210 vs. ExPASy Swiss-Prot
Match: Q7XAQ6 (Transcription factor LAX PANICLE 1 OS=Oryza sativa subsp. japonica OX=39947 GN=LAX1 PE=1 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.2e-23
Identity = 59/97 (60.82%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 35  GGKRSKGVVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFL 94
           GG R +   KLSTDPQSVAARERRHRISDRF++L+SLVPGG+KMDTVSML++AIHYVKFL
Sbjct: 30  GGGRRRPGAKLSTDPQSVAARERRHRISDRFRVLRSLVPGGSKMDTVSMLEQAIHYVKFL 89

Query: 95  KTQIWLHQ-TMINFVDSDPSSVAAAAATAANSGLPFD 131
           K Q+ LHQ  ++   +    +  AAA +AA++ L  +
Sbjct: 90  KAQVTLHQAALVQHEEGCQHADVAAAFSAADADLALE 126

[Close]

BLAST of Clc04G07210 vs. ExPASy Swiss-Prot
Match: Q9LXD8 (Transcription factor HEC3 OS=Arabidopsis thaliana OX=3702 GN=HEC3 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.6e-18
Identity = 49/81 (60.49%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 43  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQ 102
           V++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAI YVKFLK QI L  
Sbjct: 123 VRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLN 182

Query: 103 TMINFVDSDPSSVAAAAATAA 124
               +    P   A+ A T +
Sbjct: 183 NNTGYTPPPPQDQASQAVTTS 203

[Close]

BLAST of Clc04G07210 vs. ExPASy Swiss-Prot
Match: Q9FHA7 (Transcription factor HEC1 OS=Arabidopsis thaliana OX=3702 GN=HEC1 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-17
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 43  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI 99
           V++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAIHYVKFLK Q+
Sbjct: 126 VRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQV 181

[Close]

BLAST of Clc04G07210 vs. ExPASy Swiss-Prot
Match: Q9SND4 (Transcription factor HEC2 OS=Arabidopsis thaliana OX=3702 GN=HEC2 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-17
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 43  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI 99
           V++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAIHYVKFLK Q+
Sbjct: 123 VRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQV 178

[Close]

BLAST of Clc04G07210 vs. ExPASy TrEMBL
Match: A0A5A7T6E1 (HLH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold141G00320 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 5.5e-80
Identity = 170/196 (86.73%), Postives = 173/196 (88.27%), Query Frame = 0


Query: 1   MDYNLPASNPSSCGSSSGGGSGGKEKMKKNTN---GSGGKRSKGVVKLSTDPQSVAARER 60
           MDYN PASNPSSCGSSSGGG GGKEKMKKN N   G  GKRSKGVVKLSTDPQSVAARER
Sbjct: 1   MDYNFPASNPSSCGSSSGGG-GGKEKMKKNNNNNHGGAGKRSKGVVKLSTDPQSVAARER 60

Query: 61  RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDSDP-SSVA 120
           RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVD D  SS A
Sbjct: 61  RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNSSAA 120

Query: 121 AAAATAANSGLPFDQIAGGEYNNNMNFLYPQNDVVKMEEP-FLPQLDPNNNNSNLYFPSD 180
            +AA  ANSG PF+QIA GEYNN  N LYPQNDVVKMEEP FLPQLDPNNNN N+YFPSD
Sbjct: 121 VSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNN-NVYFPSD 180

Query: 181 -QDQFISSSYDPYINF 191
            QDQFISSSYDPYINF
Sbjct: 181 HQDQFISSSYDPYINF 194

[Close]

BLAST of Clc04G07210 vs. ExPASy TrEMBL
Match: A0A0A0KXM0 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G312280 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 5.5e-80
Identity = 170/196 (86.73%), Postives = 173/196 (88.27%), Query Frame = 0


Query: 1   MDYNLPASNPSSCGSSS-GGGSGGKEKMKKNTN--GSGGKRSKGVVKLSTDPQSVAARER 60
           MDYN PASNPSSCGSSS GGG GGKEKMKKN N  G  GKRSKGVVKLSTDPQSVAARER
Sbjct: 1   MDYNFPASNPSSCGSSSGGGGGGGKEKMKKNNNNHGGAGKRSKGVVKLSTDPQSVAARER 60

Query: 61  RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDSDP-SSVA 120
           RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVD D  SS A
Sbjct: 61  RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNSSAA 120

Query: 121 AAAATAANSGLPFDQIAGGEYNNNMNFLYPQNDVVKMEEP-FLPQLDPNNNNSNLYFPSD 180
            +AA  ANSG PF+QIA GEYNN  N LYPQNDVVKMEEP FLPQLDPNNNN N+YFPSD
Sbjct: 121 VSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNN-NVYFPSD 180

Query: 181 -QDQFISSSYDPYINF 191
            QDQFISSSYDPYINF
Sbjct: 181 HQDQFISSSYDPYINF 195

[Close]

BLAST of Clc04G07210 vs. ExPASy TrEMBL
Match: A0A5D3CHB0 (HLH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold107G00040 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 2.3e-78
Identity = 168/196 (85.71%), Postives = 171/196 (87.24%), Query Frame = 0


Query: 1   MDYNLPASNPSSCGSSSGGGSGGKEKMKKNTN---GSGGKRSKGVVKLSTDPQSVAARER 60
           MDYN PASNPSSCGSSSGGG GGKEKMKKN N   G  GKRSKGVVKLSTDPQSVAARER
Sbjct: 1   MDYNFPASNPSSCGSSSGGG-GGKEKMKKNNNNNHGGAGKRSKGVVKLSTDPQSVAARER 60

Query: 61  RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDSDP-SSVA 120
           RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVD D  SS A
Sbjct: 61  RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNSSAA 120

Query: 121 AAAATAANSGLPFDQIAGGEYNNNMNFLYPQNDVVKMEEP-FLPQLDPNNNNSNLYFPSD 180
            +AA  ANSG PF+QIA GEYNN  N LYPQNDVVKMEEP FLPQLDPNNNN N+YFPSD
Sbjct: 121 VSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEEPNFLPQLDPNNNN-NVYFPSD 180

Query: 181 -QDQFISSSYDPYINF 191
            QDQFISSSYDPY  F
Sbjct: 181 HQDQFISSSYDPYXFF 194

[Close]

BLAST of Clc04G07210 vs. ExPASy TrEMBL
Match: A0A6J1EVF6 (transcription factor bHLH140 OS=Cucurbita moschata OX=3662 GN=LOC111438152 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 4.2e-72
Identity = 156/198 (78.79%), Postives = 168/198 (84.85%), Query Frame = 0


Query: 1   MDYNLPASNPSSCGSSSGGGSGG---KEKMKKNTNGS-GGKRSKGVVKLSTDPQSVAARE 60
           MDY  PASNPSSCGSSSGG + G   KEK+KKN++GS GGKRSKGVVKLSTDPQSVAARE
Sbjct: 1   MDYTFPASNPSSCGSSSGGATTGATRKEKLKKNSSGSCGGKRSKGVVKLSTDPQSVAARE 60

Query: 61  RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDSDPSSVA 120
           RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVD D SS +
Sbjct: 61  RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDSSNS 120

Query: 121 AAAATAANSGLPFDQIAGGEYNNN--MNFLYPQNDVVKMEEP--FLPQLDPNNNNSNLYF 180
            AAA A N G  FDQIAGGE++NN   +F+Y QNDVVKMEEP   LPQLDPN    NLYF
Sbjct: 121 TAAAAAVNCGFHFDQIAGGEFHNNDTNSFVYSQNDVVKMEEPPNLLPQLDPN----NLYF 180

Query: 181 PSDQDQFISSSYDPYINF 191
           PS QDQ++ SSYDPY+NF
Sbjct: 181 PSGQDQYMCSSYDPYMNF 194

[Close]

BLAST of Clc04G07210 vs. ExPASy TrEMBL
Match: A0A6J1HPK4 (transcription factor LAX PANICLE 1-like OS=Cucurbita maxima OX=3661 GN=LOC111466180 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 2.0e-69
Identity = 155/200 (77.50%), Postives = 168/200 (84.00%), Query Frame = 0


Query: 1   MDYNLPASNPSSCGSSSGGG---SGGKEKMKKNTNGS-GGKRSKGVVKLSTDPQSVAARE 60
           MDYN PASNPSSCGSSSGG    +  KEK+KKN++GS GGKRSKGVVKLSTDPQSVAARE
Sbjct: 1   MDYNFPASNPSSCGSSSGGATTEATRKEKLKKNSSGSCGGKRSKGVVKLSTDPQSVAARE 60

Query: 61  RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDSDPSSVA 120
           RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVD D SS +
Sbjct: 61  RRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDSSNS 120

Query: 121 AAAATAA--NSGLPFDQIAGGEYNNN--MNFLYPQNDVVKMEEP--FLPQLDPNNNNSNL 180
            AA TAA  N G  F+QIAGGE++NN   +F+Y QNDVVKMEEP   LPQLDPN    NL
Sbjct: 121 TAAVTAAAVNCGFHFNQIAGGEFHNNDTNSFVYSQNDVVKMEEPPNLLPQLDPN----NL 180

Query: 181 YFPSDQDQFISSSYDPYINF 191
           YFPS QDQ++ SSYD Y+NF
Sbjct: 181 YFPSGQDQYMCSSYDAYMNF 196

[Close]

BLAST of Clc04G07210 vs. TAIR 10
Match: AT5G01310.1 (APRATAXIN-like )

HSP 1 Score: 119.4 bits (298), Expect = 3.1e-27
Identity = 68/122 (55.74%), Postives = 85/122 (69.67%), Query Frame = 0


Query: 2   DYNLPASNPSSCGSSSGGGSGGKEKMKKNTNGSGGKRSKGVVKLSTDPQSVAARERRHRI 61
           D+NL + NP+S  S++   S    + K  T  +  KRS+    LSTDPQSVAAR+RRHRI
Sbjct: 3   DFNLRSENPNS-SSTTSSSSSSFHRHKSETGNT--KRSRSTSTLSTDPQSVAARDRRHRI 62

Query: 62  SDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDSDPSSVAAAAAT 121
           SDRFKILQS+VPGG KMDTVSMLDEAI YVKFLK QIW HQ M+ F++   ++ +   + 
Sbjct: 63  SDRFKILQSMVPGGAKMDTVSMLDEAISYVKFLKAQIWYHQNMLLFINDHETTSSCTYSP 121

Query: 122 AA 124
            A
Sbjct: 123 GA 121

[Close]

BLAST of Clc04G07210 vs. TAIR 10
Match: AT5G09750.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.8e-19
Identity = 49/81 (60.49%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 43  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQ 102
           V++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAI YVKFLK QI L  
Sbjct: 123 VRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLN 182

Query: 103 TMINFVDSDPSSVAAAAATAA 124
               +    P   A+ A T +
Sbjct: 183 NNTGYTPPPPQDQASQAVTTS 203

[Close]

BLAST of Clc04G07210 vs. TAIR 10
Match: AT3G50330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 91.3 bits (225), Expect = 9.2e-19
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 43  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI 99
           V++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAIHYVKFLK Q+
Sbjct: 123 VRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQV 178

[Close]

BLAST of Clc04G07210 vs. TAIR 10
Match: AT5G67060.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 91.3 bits (225), Expect = 9.2e-19
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 43  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI 99
           V++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAIHYVKFLK Q+
Sbjct: 126 VRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQV 181

[Close]

BLAST of Clc04G07210 vs. TAIR 10
Match: AT3G21330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-17
Identity = 39/56 (69.64%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 43  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI 99
           VK+STDPQ+VAAR+RR RIS++ ++LQ+LVPGGTKMDT SMLDEA +Y+KFL+ Q+
Sbjct: 273 VKISTDPQTVAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQV 328

The following BLAST results are available for this feature:

BLAST of Clc04G07210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883835.1	1.0e-83	90.21	transcription factor LAX PANICLE 1 [Benincasa hispida]	[more]
KAA0037736.1	1.1e-79	86.73	HLH domain-containing protein [Cucumis melo var. makuwa]	[more]
XP_031739731.1	1.1e-79	86.73	transcription factor bHLH140 [Cucumis sativus] >KGN54395.1 hypothetical protein ...	[more]
TYK10925.1	4.8e-78	85.71	HLH domain-containing protein [Cucumis melo var. makuwa]	[more]
XP_022931869.1	8.8e-72	78.79	transcription factor bHLH140 [Cucurbita moschata]	[more]

BLAST of Clc04G07210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M041	4.4e-26	55.74	Transcription factor bHLH140 OS=Arabidopsis thaliana OX=3702 GN=BHLH140 PE=3 SV=...	[more]
Q7XAQ6	1.2e-23	60.82	Transcription factor LAX PANICLE 1 OS=Oryza sativa subsp. japonica OX=39947 GN=L...	[more]
Q9LXD8	2.6e-18	60.49	Transcription factor HEC3 OS=Arabidopsis thaliana OX=3702 GN=HEC3 PE=1 SV=1	[more]
Q9FHA7	1.3e-17	78.57	Transcription factor HEC1 OS=Arabidopsis thaliana OX=3702 GN=HEC1 PE=1 SV=1	[more]
Q9SND4	1.3e-17	78.57	Transcription factor HEC2 OS=Arabidopsis thaliana OX=3702 GN=HEC2 PE=1 SV=1	[more]

BLAST of Clc04G07210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T6E1	5.5e-80	86.73	HLH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A0A0KXM0	5.5e-80	86.73	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G312280 PE=4 S...	[more]
A0A5D3CHB0	2.3e-78	85.71	HLH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A6J1EVF6	4.2e-72	78.79	transcription factor bHLH140 OS=Cucurbita moschata OX=3662 GN=LOC111438152 PE=4 ...	[more]
A0A6J1HPK4	2.0e-69	77.50	transcription factor LAX PANICLE 1-like OS=Cucurbita maxima OX=3661 GN=LOC111466...	[more]

BLAST of Clc04G07210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01310.1	3.1e-27	55.74	APRATAXIN-like	[more]
AT5G09750.1	1.8e-19	60.49	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G50330.1	9.2e-19	78.57	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G67060.1	9.2e-19	78.57	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G21330.1	1.7e-17	69.64	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 51..100 e-value: 1.6E-12 score: 57.6
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 55..94 e-value: 1.4E-7 score: 31.4
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 45..94 score: 15.357671
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 48..107 e-value: 3.0E-10 score: 42.1
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 50..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	PANTHER	PTHR45914:SF2	TRANSCRIPTION FACTOR LAX PANICLE 1	coord: 28..128
None	No IPR available	PANTHER	PTHR45914	TRANSCRIPTION FACTOR HEC3-RELATED	coord: 28..128
None	No IPR available	CDD	cd11454	bHLH_AtIND_like	coord: 46..105 e-value: 5.14201E-41 score: 131.36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G07210.1	Clc04G07210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity