Clc04G07160 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G07160
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	kinetochore protein SPC24 homolog
Location	ClcChr04: 20797995 .. 20800237 (-)
RNA-Seq Expression	Clc04G07160
Synteny	Clc04G07160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAGATCCCCTCCGAAGCAAACGCTCCCCACTGACTATTGAATTCAAATTTCCCTTACTTCTTCACAGCAAGCTCCTTGTTGATTTCTTCTTCAATTCAGAGAAATGGGAGATTTCTCCTCAAACTCCGACATCGAGGAGTTCATATCTTTTGCCGACGATTTGGTAGAACTCTTAAAGGACCCAATTGACGTTCAAAACTTGAATCAATGTCTCGAACATTTCAAGGCCCTTCAATCTTCTTGTGACGATGATTTCAGTAGTGTTCAAAGTTTAATTCAAGGTATATTGTCTTTGTTTCTCTAAAATGGGTTGTATTTATTATCATTTTGAGGTTAGAAATTTTGGGTCTTTTGGGGTTGCGCGCACTATGGGAGTTGATTTCATTTAATTTGTTTAACAAGTTATTAAATGAAGCAGATTATGAGAAGAAAATTCAGGCATGCCGGCAGAAAACAGAAGAGGCGAAAGCGAACACTGTTGCGGATGATGAAATGGAGATTCTCGAAAAGGAACTCGAAGAGGAGGTTGGGAAAGGGCATTTGCTCATGGAGGAGATTAGATAAGTGTAAAATTAAGTTTAATTGTGAAATTCTTCATATGATTGTTTTTCCTAATGTATTTATGTATGATTTTTCGTCAACACACTGGTCACCAATGAGATTAATGAACTAGAACGCCAAAGGATTTCTGTTCAAGAAAGGAAGCAGGCGATGAAGAAACTTGAGCAGCAAGGAATTTGGGCTCAGTGAGTATATTTTCTGTTTTGAAGTTGCTTTGTCATCTGTAATTATGAACTGTTAATTTCGTAGCAATTTTCTAATTCCAGTGACTTTTGAATCTATTTAAGAATTCTGCAGTATCAAGTATTGTCTGGCAAGCATGATTTTTATGTATTTTTAGTTGGAACTTGGAAGTACAGAAGTTTTACCTTTTATGTATAAAAATTTTAGGTTATTGGCCCCTTTCTTTCTCCTATCGGTTGCTTATGGTTAGAAAGGTTAACAAAGTAGACACTCCTATGAAGATGGCTGCTTAATATTTAAACTACTGAACGTTTTGTAGGCTCATATTTTATCCATGACATAGATAAATGCCAACCTCTTCATATCTTAAAGCCATGGAATCTGTCCTACGTTGAAAATGGGAAATTTTTCTACAAGGTATTTGAAGTTTGCTAAAAGAAGAGAGTGAGAACAAACAAGGGTAACAATGATTAGTAAACAAAACTACCAAGTACAAAAAGTTGTCGAAGTCATTGTTTATAAACGAGGTGGATTAGACTTATATCAAGGGTTAAGAATGCAAACAAAGTCCCACATTGATTAGAAAAGGAGGTCTATGGAATATAAGTGAGGACAACTATTTCCATTGATACGAGACTTTTTGGGTGAAACCAAAAGTGAAGTCACAAGGACTTATGCCAAAAGTAGACTATATTGTACAATTGTTGAAAGACGTGATGGATCCACTGCCCTTCACATATGGAACTGTAGTTCATTCCAAAACGGAATTTATGGTAGTTGCAATTATTGTATTCTTTTTAACTATGAACTTATAAACTGGGTGGCTGTCAAAGATCCCTGACAACTCAAGTCTCAGTAATCTTTTGTTGACATTAACTTGATAATTGCCATTCTTCTAAATAGATGCATATTTTCTTATCCCTTTTTTTCTTGCAGAAGGAAGCTTTCAATGTATGCTTCGGTCACTGATATAATACCAAACATGGACGATCAGTCTAAAATTTCTGGCCGTATCCTTCGTCTGAATTTATACTCTTTTCTGTTATATTTTCTTTTTCCCTATTGCAATTATTTTACCTTGACGTGAATCAACTACAGATATTGTGGACAGAAATAAACGGGTTGTGCAAGAGTTTGAATTCGACCCCACTAAGATGTCTTCTTTTGATATATGCAATGGCATTTGGAATATGATTAATTCCCCATAGTACTAGACATCAATTACATTGTGACTTAGAAGCTTACTATTGCTTGATCCTTCTTTCTTCACTTCATGGTATTAAAATAGAACGTTTATTTTGTTGTATATGTATGTTTAAAGGACTACTCTCTAAAGTCCTGTCATTTATGATAACTTATTGTAAATCACAGCTCCTTAGTCCTTGATGATTATTGAAGAAAAGAATGTCCTATGTTAGGCACCAAGCCATGAAAATGGTAAATGATGTTGCTCATTTTCATGGATATTTGATTTTCAAGGAAGCAACTAACTCTGTA

mRNA sequence

CAAAGATCCCCTCCGAAGCAAACGCTCCCCACTGACTATTGAATTCAAATTTCCCTTACTTCTTCACAGCAAGCTCCTTGTTGATTTCTTCTTCAATTCAGAGAAATGGGAGATTTCTCCTCAAACTCCGACATCGAGGAGTTCATATCTTTTGCCGACGATTTGGTAGAACTCTTAAAGGACCCAATTGACGTTCAAAACTTGAATCAATGTCTCGAACATTTCAAGGCCCTTCAATCTTCTTGTGACGATGATTTCAGTAGTGTTCAAAGTTTAATTCAAGATTATGAGAAGAAAATTCAGGCATGCCGGCAGAAAACAGAAGAGGCGAAAGCGAACACTGTTGCGGATGATGAAATGGAGATTCTCGAAAAGGAACTCGAAGAGGAGGTTGGGAAAGGGCATTTGCTCATGGAGGAGATTAGACTGGTCACCAATGAGATTAATGAACTAGAACGCCAAAGGATTTCTGTTCAAGAAAGGAAGCAGGCGATGAAGAAACTTGAGCAGCAAGGAATTTGGGCTCAAAGGAAGCTTTCAATGTATGCTTCGGTCACTGATATAATACCAAACATGGACGATCAGTCTAAAATTTCTGGCCATATTGTGGACAGAAATAAACGGGTTGTGCAAGAGTTTGAATTCGACCCCACTAAGATGTCTTCTTTTGATATATGCAATGGCATTTGGAATATGATTAATTCCCCATAGTACTAGACATCAATTACATTGTGACTTAGAAGCTTACTATTGCTTGATCCTTCTTTCTTCACTTCATGGTATTAAAATAGAACGTTTATTTTGTTGTATATGTATGTTTAAAGGACTACTCTCTAAAGTCCTGTCATTTATGATAACTTATTGTAAATCACAGCTCCTTAGTCCTTGATGATTATTGAAGAAAAGAATGTCCTATGTTAGGCACCAAGCCATGAAAATGGTAAATGATGTTGCTCATTTTCATGGATATTTGATTTTCAAGGAAGCAACTAACTCTGTA

Coding sequence (CDS)

ATGGGAGATTTCTCCTCAAACTCCGACATCGAGGAGTTCATATCTTTTGCCGACGATTTGGTAGAACTCTTAAAGGACCCAATTGACGTTCAAAACTTGAATCAATGTCTCGAACATTTCAAGGCCCTTCAATCTTCTTGTGACGATGATTTCAGTAGTGTTCAAAGTTTAATTCAAGATTATGAGAAGAAAATTCAGGCATGCCGGCAGAAAACAGAAGAGGCGAAAGCGAACACTGTTGCGGATGATGAAATGGAGATTCTCGAAAAGGAACTCGAAGAGGAGGTTGGGAAAGGGCATTTGCTCATGGAGGAGATTAGACTGGTCACCAATGAGATTAATGAACTAGAACGCCAAAGGATTTCTGTTCAAGAAAGGAAGCAGGCGATGAAGAAACTTGAGCAGCAAGGAATTTGGGCTCAAAGGAAGCTTTCAATGTATGCTTCGGTCACTGATATAATACCAAACATGGACGATCAGTCTAAAATTTCTGGCCATATTGTGGACAGAAATAAACGGGTTGTGCAAGAGTTTGAATTCGACCCCACTAAGATGTCTTCTTTTGATATATGCAATGGCATTTGGAATATGATTAATTCCCCATAG

Protein sequence

MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQDYEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIRLVTNEINELERQRISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTKMSSFDICNGIWNMINSP

Homology

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BLAST of Clc04G07160 vs. NCBI nr
Match: XP_038883770.1 (kinetochore protein SPC24 homolog [Benincasa hispida])

HSP 1 Score: 355.5 bits (911), Expect = 3.0e-94
Identity = 181/201 (90.05%), Postives = 192/201 (95.52%), Query Frame = 0


Query: 1   MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQD 60
           MGDF S S+IE FISFADDLV LLKDP DVQ+LNQCLEHFKALQSSCDDDFSSVQSL+QD
Sbjct: 1   MGDFVSESNIEAFISFADDLVALLKDPFDVQDLNQCLEHFKALQSSCDDDFSSVQSLVQD 60

Query: 61  YEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIRLVTNEINELERQR 120
           YEKKI+AC+QKTEEAKANTV DDEM ILEKEL+EEVGKGHLLMEEIRLVTNEINELERQR
Sbjct: 61  YEKKIKACQQKTEEAKANTVTDDEMVILEKELDEEVGKGHLLMEEIRLVTNEINELERQR 120

Query: 121 ISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 180
           IS+QERKQAMKKLEQQ +WAQRKLSMYASVTDIIPNMDDQSKISGHIVDR+KR+VQEFEF
Sbjct: 121 ISIQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRDKRIVQEFEF 180

Query: 181 DPTKMSSFDICNGIWNMINSP 202
           D TK+SSFDICNGIWNMINSP
Sbjct: 181 DSTKISSFDICNGIWNMINSP 201

[Close]

BLAST of Clc04G07160 vs. NCBI nr
Match: XP_008464222.1 (PREDICTED: uncharacterized protein LOC103502153 [Cucumis melo])

HSP 1 Score: 355.5 bits (911), Expect = 3.0e-94
Identity = 178/201 (88.56%), Postives = 192/201 (95.52%), Query Frame = 0


Query: 1   MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQD 60
           MGDF++NS+IEE  SFADDLV +LKDP DV NLNQCLEHFK LQSSCDDDF+SVQS ++D
Sbjct: 1   MGDFATNSNIEELASFADDLVAILKDPTDVHNLNQCLEHFKTLQSSCDDDFNSVQSSVED 60

Query: 61  YEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIRLVTNEINELERQR 120
           YEKKI+ACR+KTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIRLVTNEINELERQR
Sbjct: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIRLVTNEINELERQR 120

Query: 121 ISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 180
           +SVQERKQAMKKLEQQ +WAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQ+FEF
Sbjct: 121 VSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQKFEF 180

Query: 181 DPTKMSSFDICNGIWNMINSP 202
           DPTK+SSFD CNG+WNMINSP
Sbjct: 181 DPTKISSFDTCNGLWNMINSP 201

[Close]

BLAST of Clc04G07160 vs. NCBI nr
Match: XP_004148609.1 (kinetochore protein SPC24 homolog [Cucumis sativus] >KAE8649568.1 hypothetical protein Csa_017916 [Cucumis sativus])

HSP 1 Score: 347.1 bits (889), Expect = 1.1e-91
Identity = 173/201 (86.07%), Postives = 191/201 (95.02%), Query Frame = 0


Query: 1   MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQD 60
           MGDF++NS+IEE  SFADDLV +LKDP DV+NLNQCLEHFK LQSSCDDDF+SVQS ++D
Sbjct: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60

Query: 61  YEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIRLVTNEINELERQR 120
           YEKKI+ACR+KTEEAKANTVADDEMEILEKELEEE+GKGHLLMEEIRLVTNEINELE +R
Sbjct: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIRLVTNEINELECRR 120

Query: 121 ISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 180
           +SVQERKQAMKKLEQQ +WAQRKLSMYASVTDIIPNM+DQSKISGHIVDRNKRVVQ+FEF
Sbjct: 121 VSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEF 180

Query: 181 DPTKMSSFDICNGIWNMINSP 202
           DP K+SSFD CNG+WNMINSP
Sbjct: 181 DPAKISSFDTCNGLWNMINSP 201

[Close]

BLAST of Clc04G07160 vs. NCBI nr
Match: XP_022978290.1 (uncharacterized protein LOC111478320 [Cucurbita maxima])

HSP 1 Score: 319.7 bits (818), Expect = 1.8e-83
Identity = 163/201 (81.09%), Postives = 182/201 (90.55%), Query Frame = 0


Query: 1   MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQD 60
           M DF+   +IEE +S+ DDLV LL D  DVQ LNQCLEHFK LQSSC DDFS+VQS +QD
Sbjct: 1   MADFAGKFNIEEILSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD 60

Query: 61  YEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIRLVTNEINELERQR 120
           YEKKI+ACRQKTEEAKA+TVADDE++ILEKEL EE+GKG+LLMEEIR++T+EIN+L+RQR
Sbjct: 61  YEKKIEACRQKTEEAKASTVADDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR 120

Query: 121 ISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 180
           ISVQERKQAMKKLEQQ +  QRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF
Sbjct: 121 ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 180

Query: 181 DPTKMSSFDICNGIWNMINSP 202
           DPT +SSFDICNGIWNMINSP
Sbjct: 181 DPTNISSFDICNGIWNMINSP 201

[Close]

BLAST of Clc04G07160 vs. NCBI nr
Match: XP_022950424.1 (uncharacterized protein LOC111453528 [Cucurbita moschata])

HSP 1 Score: 315.8 bits (808), Expect = 2.6e-82
Identity = 160/201 (79.60%), Postives = 181/201 (90.05%), Query Frame = 0


Query: 1   MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQD 60
           M DF+   +IEE +S+ DDLV LL D  DVQ LNQCLEHFK LQSSC DDFS+VQS +QD
Sbjct: 1   MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD 60

Query: 61  YEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIRLVTNEINELERQR 120
           YEKKI+ACRQKTEEA+ +TV+DDE++ILEKEL EE+GKG+LLMEEIR++T+EIN+L+RQR
Sbjct: 61  YEKKIEACRQKTEEARTSTVSDDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR 120

Query: 121 ISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 180
           ISVQERKQAMKKLEQQ +  QRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF
Sbjct: 121 ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 180

Query: 181 DPTKMSSFDICNGIWNMINSP 202
           DPT +SSFDICNGIWNMINSP
Sbjct: 181 DPTNISSFDICNGIWNMINSP 201

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BLAST of Clc04G07160 vs. ExPASy Swiss-Prot
Match: Q67XT3 (Kinetochore protein SPC24 homolog OS=Arabidopsis thaliana OX=3702 GN=SPC24 PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.4e-45
Identity = 90/199 (45.23%), Postives = 144/199 (72.36%), Query Frame = 0


Query: 1   MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQD 60
           MG+ S N DIE+ +S+ DDL+ LL        ++Q  E FKAL  +C +DF+ +Q  I+D
Sbjct: 1   MGNASENFDIEDLMSYGDDLINLLNVKNGFDIISQSSEQFKALNFACHEDFNQIQGSIED 60

Query: 61  YEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIRLVTNEINELERQR 120
            + K+ AC++KTEEA ++  A+DE+E L+KEL+EE+ +   L +E+RLV +E+ +L  Q 
Sbjct: 61  CKTKLYACKKKTEEAYSDIAAEDEIERLQKELDEEMEREFKLKDELRLVADELKDLNAQL 120

Query: 121 ISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 180
            S+ E KQ+ K+  +  + A++KLSMYASVT++IP++DD SKISG++VDR KR++++F+F
Sbjct: 121 SSIDEHKQSTKRKVRDDLRAEKKLSMYASVTNVIPDIDDPSKISGYMVDREKRLIEKFQF 180

Query: 181 DPTKMSSFDICNGIWNMIN 200
           +  KM++++ CN IW++IN
Sbjct: 181 ETNKMTAYETCNSIWSIIN 199

[Close]

BLAST of Clc04G07160 vs. ExPASy TrEMBL
Match: A0A1S3CKZ4 (uncharacterized protein LOC103502153 OS=Cucumis melo OX=3656 GN=LOC103502153 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.4e-94
Identity = 178/201 (88.56%), Postives = 192/201 (95.52%), Query Frame = 0


Query: 1   MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQD 60
           MGDF++NS+IEE  SFADDLV +LKDP DV NLNQCLEHFK LQSSCDDDF+SVQS ++D
Sbjct: 1   MGDFATNSNIEELASFADDLVAILKDPTDVHNLNQCLEHFKTLQSSCDDDFNSVQSSVED 60

Query: 61  YEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIRLVTNEINELERQR 120
           YEKKI+ACR+KTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIRLVTNEINELERQR
Sbjct: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIRLVTNEINELERQR 120

Query: 121 ISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 180
           +SVQERKQAMKKLEQQ +WAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQ+FEF
Sbjct: 121 VSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQKFEF 180

Query: 181 DPTKMSSFDICNGIWNMINSP 202
           DPTK+SSFD CNG+WNMINSP
Sbjct: 181 DPTKISSFDTCNGLWNMINSP 201

[Close]

BLAST of Clc04G07160 vs. ExPASy TrEMBL
Match: A0A6J1IPN8 (uncharacterized protein LOC111478320 OS=Cucurbita maxima OX=3661 GN=LOC111478320 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 8.7e-84
Identity = 163/201 (81.09%), Postives = 182/201 (90.55%), Query Frame = 0


Query: 1   MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQD 60
           M DF+   +IEE +S+ DDLV LL D  DVQ LNQCLEHFK LQSSC DDFS+VQS +QD
Sbjct: 1   MADFAGKFNIEEILSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD 60

Query: 61  YEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIRLVTNEINELERQR 120
           YEKKI+ACRQKTEEAKA+TVADDE++ILEKEL EE+GKG+LLMEEIR++T+EIN+L+RQR
Sbjct: 61  YEKKIEACRQKTEEAKASTVADDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR 120

Query: 121 ISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 180
           ISVQERKQAMKKLEQQ +  QRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF
Sbjct: 121 ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 180

Query: 181 DPTKMSSFDICNGIWNMINSP 202
           DPT +SSFDICNGIWNMINSP
Sbjct: 181 DPTNISSFDICNGIWNMINSP 201

[Close]

BLAST of Clc04G07160 vs. ExPASy TrEMBL
Match: A0A6J1GFS1 (uncharacterized protein LOC111453528 OS=Cucurbita moschata OX=3662 GN=LOC111453528 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.3e-82
Identity = 160/201 (79.60%), Postives = 181/201 (90.05%), Query Frame = 0


Query: 1   MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQD 60
           M DF+   +IEE +S+ DDLV LL D  DVQ LNQCLEHFK LQSSC DDFS+VQS +QD
Sbjct: 1   MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD 60

Query: 61  YEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIRLVTNEINELERQR 120
           YEKKI+ACRQKTEEA+ +TV+DDE++ILEKEL EE+GKG+LLMEEIR++T+EIN+L+RQR
Sbjct: 61  YEKKIEACRQKTEEARTSTVSDDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR 120

Query: 121 ISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 180
           ISVQERKQAMKKLEQQ +  QRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF
Sbjct: 121 ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 180

Query: 181 DPTKMSSFDICNGIWNMINSP 202
           DPT +SSFDICNGIWNMINSP
Sbjct: 181 DPTNISSFDICNGIWNMINSP 201

[Close]

BLAST of Clc04G07160 vs. ExPASy TrEMBL
Match: A0A6J1CR83 (uncharacterized protein LOC111013852 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013852 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 1.2e-80
Identity = 161/201 (80.10%), Postives = 178/201 (88.56%), Query Frame = 0


Query: 1   MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQD 60
           MGDFS   +IEE +S+ +DLV LLKD  DVQ LNQCLEH KALQS CDDDFS+V S +QD
Sbjct: 1   MGDFSGKINIEELLSYGNDLVALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQD 60

Query: 61  YEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIRLVTNEINELERQR 120
           YEKKI+ACRQKTEEAKA TVAD EM++LE+ELEEE+ K HLLMEEIRLVT+EINEL+ QR
Sbjct: 61  YEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIRLVTSEINELDCQR 120

Query: 121 ISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 180
           ISVQERKQAMKKLEQQ + AQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQ+FE 
Sbjct: 121 ISVQERKQAMKKLEQQELRAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQKFEL 180

Query: 181 DPTKMSSFDICNGIWNMINSP 202
           DPTK S+FDICN IW+MINSP
Sbjct: 181 DPTKTSAFDICNSIWDMINSP 201

[Close]

BLAST of Clc04G07160 vs. ExPASy TrEMBL
Match: A0A6J1HU69 (uncharacterized protein LOC111466216 OS=Cucurbita maxima OX=3661 GN=LOC111466216 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.9e-79
Identity = 160/201 (79.60%), Postives = 176/201 (87.56%), Query Frame = 0


Query: 1   MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQD 60
           MGDFS   +IEE +S+ +DLV LLKD  DVQ LNQCL+HF ALQSSC DDFS+V  L+QD
Sbjct: 1   MGDFSGKMNIEELLSYGNDLVVLLKDQNDVQTLNQCLQHFNALQSSCHDDFSNVH-LVQD 60

Query: 61  YEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIRLVTNEINELERQR 120
           YEKKI+ CR KTEEAKA TVADDEM+ILEKE+EEE+ + HLLMEEIRLVTN+INEL+RQR
Sbjct: 61  YEKKIEECRVKTEEAKARTVADDEMDILEKEVEEELREEHLLMEEIRLVTNQINELDRQR 120

Query: 121 ISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 180
           ISVQERKQA KKLEQQ + AQRKLSMYASVTDIIPNMDD SKISGHIVDRNKRVVQ+FE 
Sbjct: 121 ISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFEL 180

Query: 181 DPTKMSSFDICNGIWNMINSP 202
           DPTK SSFDICN IWNMINSP
Sbjct: 181 DPTKTSSFDICNDIWNMINSP 200

[Close]

BLAST of Clc04G07160 vs. TAIR 10
Match: AT3G08880.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01570.1); Has 177 Blast hits to 175 proteins in 60 species: Archae - 4; Bacteria - 33; Metazoa - 18; Fungi - 11; Plants - 59; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). )

HSP 1 Score: 183.0 bits (463), Expect = 2.4e-46
Identity = 90/199 (45.23%), Postives = 144/199 (72.36%), Query Frame = 0


Query: 1   MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQD 60
           MG+ S N DIE+ +S+ DDL+ LL        ++Q  E FKAL  +C +DF+ +Q  I+D
Sbjct: 1   MGNASENFDIEDLMSYGDDLINLLNVKNGFDIISQSSEQFKALNFACHEDFNQIQGSIED 60

Query: 61  YEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIRLVTNEINELERQR 120
            + K+ AC++KTEEA ++  A+DE+E L+KEL+EE+ +   L +E+RLV +E+ +L  Q 
Sbjct: 61  CKTKLYACKKKTEEAYSDIAAEDEIERLQKELDEEMEREFKLKDELRLVADELKDLNAQL 120

Query: 121 ISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 180
            S+ E KQ+ K+  +  + A++KLSMYASVT++IP++DD SKISG++VDR KR++++F+F
Sbjct: 121 SSIDEHKQSTKRKVRDDLRAEKKLSMYASVTNVIPDIDDPSKISGYMVDREKRLIEKFQF 180

Query: 181 DPTKMSSFDICNGIWNMIN 200
           +  KM++++ CN IW++IN
Sbjct: 181 ETNKMTAYETCNSIWSIIN 199

[Close]

BLAST of Clc04G07160 vs. TAIR 10
Match: AT5G01570.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G08880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 120.2 bits (300), Expect = 1.9e-27
Identity = 73/193 (37.82%), Postives = 114/193 (59.07%), Query Frame = 0


Query: 1   MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQD 60
           M D S N   E  IS+ D+L+ +L D      L Q LE  +A+  SCD+DF  +   +QD
Sbjct: 1   MRDQSRN--FEMVISWGDELIHVLDDRKGFDVLVQTLEQLRAIPFSCDEDFKEIHESLQD 60

Query: 61  YEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIRLVTNEINELERQR 120
            +KK+  C++KT+EA +    ++E+E L+KEL+EE+     L EE+           R  
Sbjct: 61  LQKKLDVCKEKTDEANSEIADEEEIERLQKELDEELELECKLKEEL-----------RYE 120

Query: 121 ISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 180
              +E + A+K+ ++  +  + KL MYASVT +IPN+DD  K SG++V R+KR++ +FEF
Sbjct: 121 ALFEEHRLAIKRNKRDQLRTETKLPMYASVTRVIPNIDDSLKTSGYMVGRDKRLMDKFEF 180

Query: 181 DPTKMSS-FDICN 193
           D  K +S ++ CN
Sbjct: 181 DSNKSTSVYETCN 180

The following BLAST results are available for this feature:

BLAST of Clc04G07160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883770.1	3.0e-94	90.05	kinetochore protein SPC24 homolog [Benincasa hispida]	[more]
XP_008464222.1	3.0e-94	88.56	PREDICTED: uncharacterized protein LOC103502153 [Cucumis melo]	[more]
XP_004148609.1	1.1e-91	86.07	kinetochore protein SPC24 homolog [Cucumis sativus] >KAE8649568.1 hypothetical p...	[more]
XP_022978290.1	1.8e-83	81.09	uncharacterized protein LOC111478320 [Cucurbita maxima]	[more]
XP_022950424.1	2.6e-82	79.60	uncharacterized protein LOC111453528 [Cucurbita moschata]	[more]

BLAST of Clc04G07160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q67XT3	3.4e-45	45.23	Kinetochore protein SPC24 homolog OS=Arabidopsis thaliana OX=3702 GN=SPC24 PE=1 ...	[more]

BLAST of Clc04G07160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CKZ4	1.4e-94	88.56	uncharacterized protein LOC103502153 OS=Cucumis melo OX=3656 GN=LOC103502153 PE=...	[more]
A0A6J1IPN8	8.7e-84	81.09	uncharacterized protein LOC111478320 OS=Cucurbita maxima OX=3661 GN=LOC111478320...	[more]
A0A6J1GFS1	1.3e-82	79.60	uncharacterized protein LOC111453528 OS=Cucurbita moschata OX=3662 GN=LOC1114535...	[more]
A0A6J1CR83	1.2e-80	80.10	uncharacterized protein LOC111013852 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1HU69	2.9e-79	79.60	uncharacterized protein LOC111466216 OS=Cucurbita maxima OX=3661 GN=LOC111466216...	[more]

BLAST of Clc04G07160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08880.1	2.4e-46	45.23	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G01570.1	1.9e-27	37.82	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 58..136
None	No IPR available	GENE3D	3.30.160.570	Ncd80 complex, Spc24 subunit	coord: 139..200 e-value: 1.7E-10 score: 42.5
IPR044951	Kinetochore protein SPC24-like	PANTHER	PTHR35730	KINETOCHORE PROTEIN SPC24 HOMOLOG-RELATED	coord: 1..197

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G07160.2	Clc04G07160.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051983	regulation of chromosome segregation