Clc04G06730 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G06730
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Non-specific lipid-transfer protein
Location	ClcChr04: 20105858 .. 20106939 (-)
RNA-Seq Expression	Clc04G06730
Synteny	Clc04G06730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAGTAAGTTGAACACAATTGTAAAGTTGGGTTTGGCCATCACATTCTTCTGTGCCGTAATAGGTGGAGGGGTGACGACGGAGGCAGCCGTGACGTGCAACCAAGTGGTCAGCCGTTTGAGTTCCTGTATTCAGTATGTGACCGGTGGAGGAGCCCCGTCGTCGACCTGTTGCTACGGTGTGAAACAGCTAAACATGGTGGCTCAGACGACGCAGGACCGACAAGCGGTATGTCAGTGCTTGAAATCAGTGGTGAAGGGAGTTAAGTATAATGCTCAAAACGTTGCTAATGCTGCTGCTCTTCCGGCCAAGTGCGGCGTCCAGCTTCCCTACCCTATCAACCCCAATGTTGACTGTAACACGTAACAATATATCTCTCAAATTTTACCTTCATATCTTTCAATTTTATTGGAAAAATATACCCTTTTTTATGTCTAAGTTTTGGTTATACTTTTTCATAATTTTACTCATCTTTTTTACTTTCTTACCTCTTGAATTTAGTTTTCATCTAATTTCTAACTCAGTTTTGAGTTCAACTTTTACACTTTTACTCCCTCAATTTTTACTAATATTATGTTAATGCTCACTTTTAGTCTTAGATAATAAAATGATTTAAAATGAAAATTGCATGAAAAATTAGTGAAAACTTACTTAAATTAATATTACTGTAATATCTTTCAATTAAGTAATAAACTATTAACATAAATGACCAAATCAAGCATTAGTGAGAAATTAAAGGGTAAAAAAAACACTATAAATAAGAATTTAACTCTAATATTTTGAAATTTTAGGACTAAAAAAAAAATTAAACTCAAAATTTACAAATAAAAAATGTAACTTAGAGAGTAAGTGAAATTTTACTCAAAACTCAGCCTGTTTTCTATTTATTAACTTTCAGCACATTTAATTTAGTTCTTAAAAAAAGATACAATAACTTTCTTTTCCCTTAAACAAAATTAAAAAAAAAAAAAAAAAAAAAAAAGTACTAATTAATTGACAACTATTATTTTGCAGTATTAAAATGTGAGGAAAGTCAAGCAGCAACTCTAGTAGACGGCGTCGTATCAATGGAAGAATAA

mRNA sequence

ATGATGAGTAAGTTGAACACAATTGTAAAGTTGGGTTTGGCCATCACATTCTTCTGTGCCGTAATAGGTGGAGGGGTGACGACGGAGGCAGCCGTGACGTGCAACCAAGTGGTCAGCCGTTTGAGTTCCTGTATTCAGTATGTGACCGGTGGAGGAGCCCCGTCGTCGACCTGTTGCTACGGTGTGAAACAGCTAAACATGGTGGCTCAGACGACGCAGGACCGACAAGCGGTATGTCAGTGCTTGAAATCAGTGGTGAAGGGAGTTAAGTATAATGCTCAAAACGTTGCTAATGCTGCTGCTCTTCCGGCCAAGTGCGGCGTCCAGCTTCCCTACCCTATCAACCCCAATGTTGACTTATTAAAATGTGAGGAAAGTCAAGCAGCAACTCTAGTAGACGGCGTCGTATCAATGGAAGAATAA

Coding sequence (CDS)

ATGATGAGTAAGTTGAACACAATTGTAAAGTTGGGTTTGGCCATCACATTCTTCTGTGCCGTAATAGGTGGAGGGGTGACGACGGAGGCAGCCGTGACGTGCAACCAAGTGGTCAGCCGTTTGAGTTCCTGTATTCAGTATGTGACCGGTGGAGGAGCCCCGTCGTCGACCTGTTGCTACGGTGTGAAACAGCTAAACATGGTGGCTCAGACGACGCAGGACCGACAAGCGGTATGTCAGTGCTTGAAATCAGTGGTGAAGGGAGTTAAGTATAATGCTCAAAACGTTGCTAATGCTGCTGCTCTTCCGGCCAAGTGCGGCGTCCAGCTTCCCTACCCTATCAACCCCAATGTTGACTTATTAAAATGTGAGGAAAGTCAAGCAGCAACTCTAGTAGACGGCGTCGTATCAATGGAAGAATAA

Protein sequence

MMSKLNTIVKLGLAITFFCAVIGGGVTTEAAVTCNQVVSRLSSCIQYVTGGGAPSSTCCYGVKQLNMVAQTTQDRQAVCQCLKSVVKGVKYNAQNVANAAALPAKCGVQLPYPINPNVDLLKCEESQAATLVDGVVSMEE

Homology

[Close]

BLAST of Clc04G06730 vs. NCBI nr
Match: XP_004151695.1 (non-specific lipid-transfer protein 1 [Cucumis sativus] >KGN54448.1 hypothetical protein Csa_012253 [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 1.0e-40
Identity = 87/119 (73.11%), Postives = 97/119 (81.51%), Query Frame = 0


Query: 1   MMSKLNTIVKLGLAITFFCAVIGGGVTTEAAVTCNQVVSRLSSCIQYVTGGGAPSSTCCY 60
           M S L TI+KLGL +TF  AVIGGGVTTEA V+CNQV++ L  C+ YVTGGG PSS CC 
Sbjct: 1   MASNLITILKLGLTVTFLYAVIGGGVTTEAVVSCNQVITNLRPCVSYVTGGGYPSSNCCS 60

Query: 61  GVKQLNMVAQTTQDRQAVCQCLKSVVKGVKYNAQNVANAAALPAKCGVQLPYPINPNVD 120
           GVKQL+  A+TT DRQAVC+CLKS+V GVKYN QNVANAAALP KCGV LPY INPNVD
Sbjct: 61  GVKQLSTAARTTPDRQAVCRCLKSLVNGVKYNGQNVANAAALPTKCGVTLPYSINPNVD 119

[Close]

BLAST of Clc04G06730 vs. NCBI nr
Match: KAA0025399.1 (non-specific lipid-transfer protein 1-like [Cucumis melo var. makuwa] >TYK09774.1 non-specific lipid-transfer protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 175.3 bits (443), Expect = 3.8e-40
Identity = 87/119 (73.11%), Postives = 94/119 (78.99%), Query Frame = 0


Query: 1   MMSKLNTIVKLGLAITFFCAVIGGGVTTEAAVTCNQVVSRLSSCIQYVTGGGAPSSTCCY 60
           M S L TI+KLGL +T   AVIGGGVTTEA VTCNQVVS LS CI YVTGGG+PS  CC 
Sbjct: 1   MASNLITILKLGLTVTLLYAVIGGGVTTEATVTCNQVVSNLSPCISYVTGGGSPSFNCCS 60

Query: 61  GVKQLNMVAQTTQDRQAVCQCLKSVVKGVKYNAQNVANAAALPAKCGVQLPYPINPNVD 120
           GV+QLN  AQTT DRQ VC+CLKS++ GV YN QNVANAAALP KCGV LPY INPN D
Sbjct: 61  GVRQLNKAAQTTPDRQDVCRCLKSLINGVTYNGQNVANAAALPTKCGVNLPYTINPNAD 119

[Close]

BLAST of Clc04G06730 vs. NCBI nr
Match: XP_008463259.1 (PREDICTED: non-specific lipid-transfer protein 1-like [Cucumis melo])

HSP 1 Score: 175.3 bits (443), Expect = 3.8e-40
Identity = 87/119 (73.11%), Postives = 94/119 (78.99%), Query Frame = 0


Query: 1   MMSKLNTIVKLGLAITFFCAVIGGGVTTEAAVTCNQVVSRLSSCIQYVTGGGAPSSTCCY 60
           M S L TI+KLGL +T   AVIGGGVTTEA VTCNQVVS LS CI YVTGGG+PS  CC 
Sbjct: 1   MASNLITILKLGLTVTLLYAVIGGGVTTEATVTCNQVVSNLSPCISYVTGGGSPSFNCCS 60

Query: 61  GVKQLNMVAQTTQDRQAVCQCLKSVVKGVKYNAQNVANAAALPAKCGVQLPYPINPNVD 120
           GV+QLN  AQTT DRQ VC+CLKS++ GV YN QNVANAAALP KCGV LPY INPN D
Sbjct: 61  GVRQLNKAAQTTPDRQDVCRCLKSLINGVTYNGQNVANAAALPTKCGVNLPYTINPNAD 119

[Close]

BLAST of Clc04G06730 vs. NCBI nr
Match: XP_038883886.1 (non-specific lipid-transfer protein 1-like [Benincasa hispida])

HSP 1 Score: 171.4 bits (433), Expect = 5.5e-39
Identity = 85/119 (71.43%), Postives = 97/119 (81.51%), Query Frame = 0


Query: 1   MMSKLNTIVKLGLAITFFCAVIGGGVTTEAAVTCNQVVSRLSSCIQYVTGGGAPSSTCCY 60
           M S L   VKLGL ITF C VIGG V TEA VTCNQV+S L+ C+Q+VTGGGAPS  CC 
Sbjct: 1   MASNLIGNVKLGLIITFLCTVIGGRVMTEAVVTCNQVISNLNPCVQFVTGGGAPSGNCCS 60

Query: 61  GVKQLNMVAQTTQDRQAVCQCLKSVVKGVKYNAQNVANAAALPAKCGVQLPYPINPNVD 120
           GV+QL  +AQTT DRQAVC+CLKSVV GV+Y+ +NVANAAALP+KCGVQLPY I+PNVD
Sbjct: 61  GVRQLFALAQTTPDRQAVCRCLKSVVNGVRYSGKNVANAAALPSKCGVQLPYAIDPNVD 119

[Close]

BLAST of Clc04G06730 vs. NCBI nr
Match: XP_022966484.1 (non-specific lipid-transfer protein 1-like [Cucurbita maxima])

HSP 1 Score: 155.6 bits (392), Expect = 3.1e-34
Identity = 73/111 (65.77%), Postives = 89/111 (80.18%), Query Frame = 0


Query: 9   VKLGLAITFFCAVIGGGVTTEAAVTCNQVVSRLSSCIQYVTGGGAPSSTCCYGVKQLNMV 68
           VK+GL +   C +I GG  +EAAVTCNQVVS L +C+ YVTGGGAPS+TCC GV+ LN +
Sbjct: 9   VKMGLVVALVCGIIMGGRVSEAAVTCNQVVSDLGACVSYVTGGGAPSATCCSGVQDLNKL 68

Query: 69  AQTTQDRQAVCQCLKSVVKGVKYNAQNVANAAALPAKCGVQLPYPINPNVD 120
           A T  DRQAVC CL+S+VKGV YNAQ +ANAAALPA+CGV+LPY I+P +D
Sbjct: 69  ASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPARCGVKLPYKIDPRID 119

[Close]

BLAST of Clc04G06730 vs. ExPASy Swiss-Prot
Match: Q43019 (Non-specific lipid-transfer protein 3 OS=Prunus dulcis OX=3755 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.3e-24
Identity = 54/118 (45.76%), Postives = 72/118 (61.02%), Query Frame = 0


Query: 2   MSKLNTIVKLGLAITFFCAVIGGGVTTEAAVTCNQVVSRLSSCIQYVTGGGAPSSTCCYG 61
           M+    ++KL   +   C +  GG    AAV+C QVV+ L+ CI YV  GGA + +CC G
Sbjct: 1   MASSGQLLKLVCLVAVMCCMAVGGPKAMAAVSCGQVVNNLTPCINYVANGGALNPSCCTG 60

Query: 62  VKQLNMVAQTTQDRQAVCQCLKSVVKGVKYNAQNVANAAALPAKCGVQLPYPINPNVD 120
           V+ L  +AQTT DRQ++C CLK  V G+ Y   N   AA LP KCGV +PY I+P+ D
Sbjct: 61  VRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTD 118

[Close]

BLAST of Clc04G06730 vs. ExPASy Swiss-Prot
Match: Q7XJ39 (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica OX=39947 GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 101.3 bits (251), Expect = 9.2e-21
Identity = 47/107 (43.93%), Postives = 68/107 (63.55%), Query Frame = 0


Query: 13  LAITFFCAVIGGGVTTEAAVTCNQVVSRLSSCIQYVTGGGAPSSTCCYGVKQLNMVAQTT 72
           +A+     ++ G  TT AA++C QV S +S C+ Y  GG  PS+ CC GV+ LN  A TT
Sbjct: 9   VALVAAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTT 68

Query: 73  QDRQAVCQCLKSVVKGVKYNAQNVANAAALPAKCGVQLPYPINPNVD 120
            DR+  C CLK+V   +  +  N  NAA++P+KCGV +PY I+P++D
Sbjct: 69  ADRRTACNCLKNVAGSI--SGLNAGNAASIPSKCGVSIPYTISPSID 113

[Close]

BLAST of Clc04G06730 vs. ExPASy Swiss-Prot
Match: A2ZAT0 (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica OX=39946 GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 9.2e-21
Identity = 47/107 (43.93%), Postives = 68/107 (63.55%), Query Frame = 0


Query: 13  LAITFFCAVIGGGVTTEAAVTCNQVVSRLSSCIQYVTGGGAPSSTCCYGVKQLNMVAQTT 72
           +A+     ++ G  TT AA++C QV S +S C+ Y  GG  PS+ CC GV+ LN  A TT
Sbjct: 9   VALVAAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTT 68

Query: 73  QDRQAVCQCLKSVVKGVKYNAQNVANAAALPAKCGVQLPYPINPNVD 120
            DR+  C CLK+V   +  +  N  NAA++P+KCGV +PY I+P++D
Sbjct: 69  ADRRTACNCLKNVAGSI--SGLNAGNAASIPSKCGVSIPYTISPSID 113

[Close]

BLAST of Clc04G06730 vs. ExPASy Swiss-Prot
Match: Q2QYL2 (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica OX=39947 GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-20
Identity = 46/99 (46.46%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 21  VIGGGVTTEAAVTCNQVVSRLSSCIQYVTGGGAPSSTCCYGVKQLNMVAQTTQDRQAVCQ 80
           ++ G  TT AA++C QV S +S C+ Y  GG  PS+ CC GV+ LN  A TT DR+  C 
Sbjct: 16  LLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAATTTADRRTACN 75

Query: 81  CLKSVVKGVKYNAQNVANAAALPAKCGVQLPYPINPNVD 120
           CLK+V   +  +  N  NAA++P+KCGV +PY I+P++D
Sbjct: 76  CLKNVAGSI--SGLNAGNAASIPSKCGVSIPYTISPSID 112

[Close]

BLAST of Clc04G06730 vs. ExPASy Swiss-Prot
Match: Q43194 (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor OX=4558 GN=LTP2 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.6e-20
Identity = 52/115 (45.22%), Postives = 72/115 (62.61%), Query Frame = 0


Query: 9   VKLGLAITFF---CAVIGGGVTTEAAVTCNQVVSRLSSCIQYVTG-GGAPSSTCCYGVKQ 68
           +KL +AI       AV+    T+EAAVTC QV S +  C+ Y  G G  PS+ CC GV+ 
Sbjct: 5   MKLAVAIAVVAAAAAVVLAATTSEAAVTCGQVSSAIGPCLSYARGQGSGPSAGCCSGVRS 64

Query: 69  LNMVAQTTQDRQAVCQCLKSVVKGVKYNAQNVANAAALPAKCGVQLPYPINPNVD 120
           LN  A+TT DR+A C CLK+  +G++    NV  AA++P+KCGV +PY I+ + D
Sbjct: 65  LNSAARTTADRRAACNCLKNAARGIR--GLNVGKAASIPSKCGVSIPYTISTSTD 117

[Close]

BLAST of Clc04G06730 vs. ExPASy TrEMBL
Match: A0A0A0KY77 (Non-specific lipid-transfer protein OS=Cucumis sativus OX=3659 GN=Csa_4G333620 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 4.9e-41
Identity = 87/119 (73.11%), Postives = 97/119 (81.51%), Query Frame = 0


Query: 1   MMSKLNTIVKLGLAITFFCAVIGGGVTTEAAVTCNQVVSRLSSCIQYVTGGGAPSSTCCY 60
           M S L TI+KLGL +TF  AVIGGGVTTEA V+CNQV++ L  C+ YVTGGG PSS CC 
Sbjct: 1   MASNLITILKLGLTVTFLYAVIGGGVTTEAVVSCNQVITNLRPCVSYVTGGGYPSSNCCS 60

Query: 61  GVKQLNMVAQTTQDRQAVCQCLKSVVKGVKYNAQNVANAAALPAKCGVQLPYPINPNVD 120
           GVKQL+  A+TT DRQAVC+CLKS+V GVKYN QNVANAAALP KCGV LPY INPNVD
Sbjct: 61  GVKQLSTAARTTPDRQAVCRCLKSLVNGVKYNGQNVANAAALPTKCGVTLPYSINPNVD 119

[Close]

BLAST of Clc04G06730 vs. ExPASy TrEMBL
Match: A0A5D3CEZ6 (Non-specific lipid-transfer protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00580 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.8e-40
Identity = 87/119 (73.11%), Postives = 94/119 (78.99%), Query Frame = 0


Query: 1   MMSKLNTIVKLGLAITFFCAVIGGGVTTEAAVTCNQVVSRLSSCIQYVTGGGAPSSTCCY 60
           M S L TI+KLGL +T   AVIGGGVTTEA VTCNQVVS LS CI YVTGGG+PS  CC 
Sbjct: 1   MASNLITILKLGLTVTLLYAVIGGGVTTEATVTCNQVVSNLSPCISYVTGGGSPSFNCCS 60

Query: 61  GVKQLNMVAQTTQDRQAVCQCLKSVVKGVKYNAQNVANAAALPAKCGVQLPYPINPNVD 120
           GV+QLN  AQTT DRQ VC+CLKS++ GV YN QNVANAAALP KCGV LPY INPN D
Sbjct: 61  GVRQLNKAAQTTPDRQDVCRCLKSLINGVTYNGQNVANAAALPTKCGVNLPYTINPNAD 119

[Close]

BLAST of Clc04G06730 vs. ExPASy TrEMBL
Match: A0A1S3CIS8 (Non-specific lipid-transfer protein OS=Cucumis melo OX=3656 GN=LOC103501462 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.8e-40
Identity = 87/119 (73.11%), Postives = 94/119 (78.99%), Query Frame = 0


Query: 1   MMSKLNTIVKLGLAITFFCAVIGGGVTTEAAVTCNQVVSRLSSCIQYVTGGGAPSSTCCY 60
           M S L TI+KLGL +T   AVIGGGVTTEA VTCNQVVS LS CI YVTGGG+PS  CC 
Sbjct: 1   MASNLITILKLGLTVTLLYAVIGGGVTTEATVTCNQVVSNLSPCISYVTGGGSPSFNCCS 60

Query: 61  GVKQLNMVAQTTQDRQAVCQCLKSVVKGVKYNAQNVANAAALPAKCGVQLPYPINPNVD 120
           GV+QLN  AQTT DRQ VC+CLKS++ GV YN QNVANAAALP KCGV LPY INPN D
Sbjct: 61  GVRQLNKAAQTTPDRQDVCRCLKSLINGVTYNGQNVANAAALPTKCGVNLPYTINPNAD 119

[Close]

BLAST of Clc04G06730 vs. ExPASy TrEMBL
Match: A0A6J1HTX7 (Non-specific lipid-transfer protein OS=Cucurbita maxima OX=3661 GN=LOC111466126 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.5e-34
Identity = 73/111 (65.77%), Postives = 89/111 (80.18%), Query Frame = 0


Query: 9   VKLGLAITFFCAVIGGGVTTEAAVTCNQVVSRLSSCIQYVTGGGAPSSTCCYGVKQLNMV 68
           VK+GL +   C +I GG  +EAAVTCNQVVS L +C+ YVTGGGAPS+TCC GV+ LN +
Sbjct: 9   VKMGLVVALVCGIIMGGRVSEAAVTCNQVVSDLGACVSYVTGGGAPSATCCSGVQDLNKL 68

Query: 69  AQTTQDRQAVCQCLKSVVKGVKYNAQNVANAAALPAKCGVQLPYPINPNVD 120
           A T  DRQAVC CL+S+VKGV YNAQ +ANAAALPA+CGV+LPY I+P +D
Sbjct: 69  ASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPARCGVKLPYKIDPRID 119

[Close]

BLAST of Clc04G06730 vs. ExPASy TrEMBL
Match: A0A6J1EBM4 (Non-specific lipid-transfer protein OS=Cucurbita moschata OX=3662 GN=LOC111432531 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 4.4e-34
Identity = 73/111 (65.77%), Postives = 87/111 (78.38%), Query Frame = 0


Query: 9   VKLGLAITFFCAVIGGGVTTEAAVTCNQVVSRLSSCIQYVTGGGAPSSTCCYGVKQLNMV 68
           VK+GL +   C +I GG  +EAAVTCNQVVS L +C+ YVTGGG PS+TCC GV+ LN +
Sbjct: 9   VKMGLVVALVCGIIMGGRVSEAAVTCNQVVSDLGACVSYVTGGGTPSATCCSGVQDLNKL 68

Query: 69  AQTTQDRQAVCQCLKSVVKGVKYNAQNVANAAALPAKCGVQLPYPINPNVD 120
           A T  DRQAVC CL+S+VKGV YNAQ +ANAAALPAKCGV+LPY I+P  D
Sbjct: 69  ASTAADRQAVCGCLESLVKGVSYNAQTLANAAALPAKCGVKLPYKIDPRTD 119

[Close]

BLAST of Clc04G06730 vs. TAIR 10
Match: AT3G08770.1 (lipid transfer protein 6 )

HSP 1 Score: 95.5 bits (236), Expect = 3.6e-20
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 0


Query: 29  EAAVTCNQVVSRLSSCIQYVTGGGAPSSTCCYGVKQLNMVAQTTQDRQAVCQCLKSVVKG 88
           EAAV+CN V++ L  C+ YVT GG   + CC G+  L   AQT+ DRQ VC+C+KS + G
Sbjct: 18  EAAVSCNTVIADLYPCLSYVTQGGPVPTLCCNGLTTLKSQAQTSVDRQGVCRCIKSAIGG 77

Query: 89  VKYNAQNVANAAALPAKCGVQLPYPINPNVD 120
           +  + + + NA  LP+KCGV LPY  +P+ D
Sbjct: 78  LTLSPRTIQNALELPSKCGVDLPYKFSPSTD 108

[Close]

BLAST of Clc04G06730 vs. TAIR 10
Match: AT3G08770.2 (lipid transfer protein 6 )

HSP 1 Score: 95.5 bits (236), Expect = 3.6e-20
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 0


Query: 29  EAAVTCNQVVSRLSSCIQYVTGGGAPSSTCCYGVKQLNMVAQTTQDRQAVCQCLKSVVKG 88
           EAAV+CN V++ L  C+ YVT GG   + CC G+  L   AQT+ DRQ VC+C+KS + G
Sbjct: 18  EAAVSCNTVIADLYPCLSYVTQGGPVPTLCCNGLTTLKSQAQTSVDRQGVCRCIKSAIGG 77

Query: 89  VKYNAQNVANAAALPAKCGVQLPYPINPNVD 120
           +  + + + NA  LP+KCGV LPY  +P+ D
Sbjct: 78  LTLSPRTIQNALELPSKCGVDLPYKFSPSTD 108

[Close]

BLAST of Clc04G06730 vs. TAIR 10
Match: AT5G01870.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-19
Identity = 43/92 (46.74%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 28  TEAAVTCNQVVSRLSSCIQYVTGGGAPSSTCCYGVKQLNMVAQTTQDRQAVCQCLKSVVK 87
           +EAA++CN V + L  C+ YV  GGA   +CC G++ L+  A +  D+Q VC+C+KSVV 
Sbjct: 20  SEAAISCNAVQANLYPCVVYVVQGGAIPYSCCNGIRMLSKQATSASDKQGVCRCIKSVVG 79

Query: 88  GVKYNAQNVANAAALPAKCGVQLPYPINPNVD 120
            V Y++  +  AAALP KCGV+LPY I+P+ +
Sbjct: 80  RVSYSSIYLKKAAALPGKCGVKLPYKIDPSTN 111

[Close]

BLAST of Clc04G06730 vs. TAIR 10
Match: AT5G59310.1 (lipid transfer protein 4 )

HSP 1 Score: 91.3 bits (225), Expect = 6.8e-19
Identity = 50/112 (44.64%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 11  LGLAITFF-CAVIGGGV--TTEAAVTCNQVVSRLSSCIQYVTGGGAPSSTCCYGVKQLNM 70
           +  A+ FF C V+   +  + +AA+TC  V S LS C+ Y++ GG     CC GVK+LN 
Sbjct: 1   MAFALRFFTCFVLTVFIVASVDAAITCGTVASSLSPCLGYLSKGGVVPPPCCAGVKKLNG 60

Query: 71  VAQTTQDRQAVCQCLKSVVKGVKYNAQNVANAAALPAKCGVQLPYPINPNVD 120
           +AQTT DRQ  C+CL+S  KGV     N + A+ LP KCGV +PYPI+ + +
Sbjct: 61  MAQTTPDRQQACRCLQSAAKGV-----NPSLASGLPGKCGVSIPYPISTSTN 107

[Close]

BLAST of Clc04G06730 vs. TAIR 10
Match: AT2G38540.1 (lipid transfer protein 1 )

HSP 1 Score: 87.4 bits (215), Expect = 9.8e-18
Identity = 40/101 (39.60%), Postives = 60/101 (59.41%), Query Frame = 0


Query: 19  CAVIGGGVTTEAAVTCNQVVSRLSSCIQYVTGGGAPSSTCCYGVKQLNMVAQTTQDRQAV 78
           C ++ G +T+ AA++C  V S L++CI YV  GG     CC GVK LN +A+TT DRQ  
Sbjct: 14  CMIVAGPITSNAALSCGSVNSNLAACIGYVLQGGVIPPACCSGVKNLNSIAKTTPDRQQA 73

Query: 79  CQCLKSVVKGVKYNAQNVANAAALPAKCGVQLPYPINPNVD 120
           C C++   + +  +  N   AA +P  CGV +PY I+ + +
Sbjct: 74  CNCIQGAARALG-SGLNAGRAAGIPKACGVNIPYKISTSTN 113

The following BLAST results are available for this feature:

BLAST of Clc04G06730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151695.1	1.0e-40	73.11	non-specific lipid-transfer protein 1 [Cucumis sativus] >KGN54448.1 hypothetical...	[more]
KAA0025399.1	3.8e-40	73.11	non-specific lipid-transfer protein 1-like [Cucumis melo var. makuwa] >TYK09774....	[more]
XP_008463259.1	3.8e-40	73.11	PREDICTED: non-specific lipid-transfer protein 1-like [Cucumis melo]	[more]
XP_038883886.1	5.5e-39	71.43	non-specific lipid-transfer protein 1-like [Benincasa hispida]	[more]
XP_022966484.1	3.1e-34	65.77	non-specific lipid-transfer protein 1-like [Cucurbita maxima]	[more]

BLAST of Clc04G06730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q43019	2.3e-24	45.76	Non-specific lipid-transfer protein 3 OS=Prunus dulcis OX=3755 PE=2 SV=1	[more]
Q7XJ39	9.2e-21	43.93	Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
A2ZAT0	9.2e-21	43.93	Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica OX=39946 GN=...	[more]
Q2QYL2	1.2e-20	46.46	Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q43194	4.6e-20	45.22	Non-specific lipid-transfer protein 2 OS=Sorghum bicolor OX=4558 GN=LTP2 PE=3 SV...	[more]

BLAST of Clc04G06730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY77	4.9e-41	73.11	Non-specific lipid-transfer protein OS=Cucumis sativus OX=3659 GN=Csa_4G333620 P...	[more]
A0A5D3CEZ6	1.8e-40	73.11	Non-specific lipid-transfer protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3CIS8	1.8e-40	73.11	Non-specific lipid-transfer protein OS=Cucumis melo OX=3656 GN=LOC103501462 PE=3...	[more]
A0A6J1HTX7	1.5e-34	65.77	Non-specific lipid-transfer protein OS=Cucurbita maxima OX=3661 GN=LOC111466126 ...	[more]
A0A6J1EBM4	4.4e-34	65.77	Non-specific lipid-transfer protein OS=Cucurbita moschata OX=3662 GN=LOC11143253...	[more]

BLAST of Clc04G06730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08770.1	3.6e-20	47.25	lipid transfer protein 6	[more]
AT3G08770.2	3.6e-20	47.25	lipid transfer protein 6	[more]
AT5G01870.1	1.4e-19	46.74	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT5G59310.1	6.8e-19	44.64	lipid transfer protein 4	[more]
AT2G38540.1	9.8e-18	39.60	lipid transfer protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PRINTS	PR00382	LIPIDTRNSFER	coord: 33..49 score: 42.9 coord: 93..110 score: 42.05 coord: 53..67 score: 45.44 coord: 74..89 score: 44.9 coord: 111..122 score: 35.9
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PANTHER	PTHR33076	FAMILY NOT NAMED	coord: 8..119
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 34..123 e-value: 1.8E-10 score: 50.8
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF00234	Tryp_alpha_amyl	coord: 34..112 e-value: 6.9E-9 score: 36.0
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	GENE3D	1.10.110.10		coord: 31..125 e-value: 5.4E-27 score: 96.1
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 32..119
None	No IPR available	PANTHER	PTHR33076:SF50	NON-SPECIFIC LIPID-TRANSFER PROTEIN 10-RELATED	coord: 8..119
None	No IPR available	CDD	cd01960	nsLTP1	coord: 32..119 e-value: 8.72517E-30 score: 101.658

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G06730.2	Clc04G06730.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
molecular_function	GO:0008289	lipid binding