Clc04G06470 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G06470
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	RING-type domain-containing protein
Location	ClcChr04: 19772762 .. 19781317 (-)
RNA-Seq Expression	Clc04G06470
Synteny	Clc04G06470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCTGTTTGAAAATTGTGATCGGATATTGATAATGGAGAGCTGACCTTCTTCTTTCTCCCTTCACCCTTTGTTTTTCCCCTTTTTCTCTTGTTCGCCCTCTTTCCCTTCTTCCCTCGAGCTTCATAGGGCTCAAATTTCCGCCATTTTTGTATATCATCATCACCATCGAGACCCCAACAAAGCTTTTTTCCCATATTCTTTCATCTTATTTCGATCACCCTTCTTTTACTTCCACCATTTTCATCCATTCATTCCATCAAACCCTCCCCTTTTCACCCCTTTTCGTGATTCGCCGGTTTCTTTGACATTCTTTAATCCGATGATCGTGCCCCACTTGCTTGATTTCTGATTCACTATTGTTATTGTGTTATTGTCGTTGCTAGAAGTACTGTAGATCGGATTTTCTTATCTGGGTTGTTGCCATGTCGTGATTTTTCTTTATCTGAGGTTCTCCACGGAGTCTCGTTTGCGGAGAAGGTAATTAAGTTCTGTTTCTTTCAGTTGTTCTTGTTCACTTTTCATAGTTTTTATTGCCCATTTCATGTAGATTTCAACTTCATTATCTTTAGATTGCTTCTTTTACAAGGAAATTTGTCTTTCCTCTTTATGTTATGGTTAAATTTTTCGTATGTTGTTGTATTGATTGTCAAGAATATTATGGCGATTAGGGTTAGGCCATTCAGCCGAATGGAAGGGTCTGGTAGCGACCCCGACTCTCATAGAGCTGCTTCCACCAGTAGTAGTTCAAGAAGGTTTGGAATGTTATCTGCCTCGAATATTATTCAGGCTCCGCTTTCTGCGCTGTTAGAGTATTCGGGTCTTCTTCGCGGCCGCCCAAGTCATCAAGAATCTGAGGCATTGATAAGTGCGCGACTGCCTTCGGGGTTTCGAGACCATCTTCGCAGCCAGATTGAAGAATCTTCGGGTGCCACTAATGATGGAGAGGTTTCGATTAGGATAATTGGGGCAGGGGAACCAGAACATGGTAGGGATGGTGCTGGACTAGTAGTTGGGCAAGCAAGGGAAGTTAGTGGTCAGAATGCGGTGTCTTTGCAATCTGTTTCGGGGTTGGCATCTGTGACCTTGGGGTCGGATCTTAGCCAGGGCAATTCTGCTACTGAACGCGGTGCAAGAGAGGGCATTCCTCAATCGATAAATGGAAATGCTGATGGAGATGCCTCGGAGGCGGCTGGGGGAAATAGCAGGGATTCTTCTTATCAGAGGTATGATATTCAACAGGCTGCTCGGGGGATTGAGCAGATTCTCCCATTTAGTTTCCTTCTACTGGTGGTCTTCATTCGACAGCATTTGCAAGGTACCTGCCTTGACTTTAATCATGATTTTAACTTACTATGGGTCACCAAAAATTTATTTACTTCAAATTTTGAATTGTCATTAATGTGGCTGGATTATGGACAGTAGCCAGAAAGATTTGGACAATCATGAACTACTGCATCGTCTTTATGCAGCAAGCATATGTGCTCTTTAGCTTTATTGTCATTGGTCGCTTTCTATAAGAAAAAAAAAAAAATGAATAGAATTGACTGAAAGTCTGAAATATTATGGGGCTTTTGAAAATCAATGGGATTTAACATTTTTGATCACTTGGTGACCTTCCCATTACCAAATATAGGAGTTACAAATTGTCAACTTGGCAAAATAATCTTCCAATATACAATCAATGTTGTATTAATAGCAGCGAAAGTTCAACTTATCAACGTCAATGAACAATTATACTCATTTAAATTGCTGAACACTCTAAAATTTTGAAGTACAGTGCACGATAGGAATAGATGGACAAATCACATAATAAATAAAATCAATTTTTTTATTCATAAAGATAAATGTGAAGCTCATATCATCTATGTTATCATGTTTTCCAAAGGTTAAAATAAAATTAACTGATCAATTTAGATGTAAAGTTCCCCTGCACAAGAATATATGAACAAGGACATTAGTTGTTGGTTTTTTTTTAGATTCACAAATTATGTGGTCATTCTTGTTAGATTCTCGTATTAGTTTATTTATTTATTAATAATTATATTGTGTTTTAACTATTTTTATATTGAATTTTCAAATTATGGCCTTGATGCTAATTATTGGTCATTTTTTTTGGGGGGGGGGGGGGGGGGGGGTTATGGTCTTGATGCTAATTATTAATTTTGAAGCATTTCGTGGTTTTTCTGCAAAGTTTACATGCGTTTCCTTGAGAGATATTTACATGTGTTTATATGTAACTCAGATGAACTTGACATCATCTGTATCAACCTAATCTAATTTAAGTTCACAGAAATCAAAGCATGTCCATATCTTTCCCTTTGATAAGATACCTCAACTTCTAAATTTCTTCTCCAAAGAGTTACTCATGTCAAGGTAATTTAGATGTTGAACAATAAAAATGTGAAAGTCAATAATTTTTTAGTTAAAATTAAAATTCAGAATAAAAGAAAGGAAAAGAAGTAGAAACAAAATTTTATCATCTTGAATCAATATTTGAGATGGAACTAATTAATGAACCTATGAGAGATTTTTTAATGAAATTACAAAAAATCCGTACGTCATCGGTTATAACATATAGATATAGAAATTTTTAAGAATAACAGGATGTTTAGGGGATTAGTGAGAGATTCTTTTAGGTTTTGGTCCCTTGTTAGGTATCATGTTCTTTTTAGGCTTTGGTTTCAAAGACCTTTTGTAACTGTCCTATATGTTTTATTTTGTATAGTTGGAGTCCCTTCTTACAAAGAGATCCCTTTCTCTCTTTTGTGCGCTTGGTTTTTGTTTGCCATTGTATTCTTTCATTTTTATCTAGATGAAAGTCGTTTCTTTCTTAAAAAAAAGTAGAAATATTTGAGAATGCTCTCTTTTTTTTGTTTTGACATTTATAAAAGATTTAATTGCTCTAATATTACATGTCTCCACATATATTTCTCTGCAATTTTTTCTCCTTCTGGTGTTGAAATTTGCGCCCTAAACTTGTAGGTTTCTTTGTGACAATATGGATTGCTGCTTTCATGTACAAGTCAAATGATATTTTGCGAAAACAAACAGCTTTGAAGGTATGTAATGGCATATTTTAATGTTTGGGATTCATACTCTTTGTGTGTATGTGTTAGGTTGGCCTAGTACCAACATGAGCCGTAAATGGCTTAAAGAGAATGAGTTCAAATCATAATGACCATCTACTTAGGATTTAGTATCCTACAAGTTACTTGTCATATATCTTTTTATTTCTTGTTTTAATGAATAACCAAGCTTTCATTGAGGGAAAAAAAGTGAATGTATACAAGACCATACAAAAAAGAGAGCCCAGAAAAGATGGGGGCAACCCAAAAGAAAGGCCTCCAATCAAGCAAGATAAAACTAAACGAATAATTACAAAAAAGCTTCATATTGGAAGCCCACAAGGAAGCATGGAACCTGTCAAAGGACTAAACATTCCAAGGATGGCGCTCCAACCTTCTAATGGTTTTTTCTTTGTTCCATTTTTCTGAACGTGGGCTTTATTGGTTCCTGCAGGGGGAGAGAAAAATCTCTGTTTTGGTTGGCATTTCTCTTGCATTCACTATTCATGTTATTGGTGTGTACTGGTGGTATCAGAATGATGACCTTTTATATCCATTGATCATGCTTCCCCCAAGAGCGATTCCTCCTTTTTGGCATGCTATTTTCATCATCATGGTGAATGGTAACCTTCTGTTAAAGTTTTCACTGATTATTACTGTATGTTTGCTGATCATAATCTATATGCGTTATCGTGACAAAGAAGTGATTTATTATGCTAGGCTGCCTAGTCACATAATTTTCTGCAAATAATTTATTTTCTCATTTTTTCTGAGTGATTATTATTATGATGATGATGATGATGATGATGATGATGATGATGATGATATATTTATTTGTCTATTTTAATAAGAGACTTAAACCTGCATCATTCAATAAACAAAGAACAAAAGAGGACACCCTAACTGGCAATCATATAATTTTACTTTTTTAAAATTTTATTGAAAGCCATTGAAAGCCATAAACTATACGAGATCACAAAACTAATCAAAAGAATTGAACAATGTGTTGGCGACACCCATTGAAAGCCATAAACTATATGAGATCACAAAAGTAATCAAAAGTATTGAATTTATTTTTAAAATTTTATTATTTCTTTCCTTCCAAAACAACCAGATGATAGCCTTTGCCACGCTCTGCCAATCAATTTAGAGATTCCAACAACTGATCTTCAAGAAGCTGAGGCTTGCCACCGCTGATTTCCATATAAATCCCAAACTTTACTGCCAAAACTAGAATGGAGGAGAGAAGATGAGATTGAAGACTCTCACTTCCCTTGCAGAAAATACACCTCTCACTTCTCTGCAGCTTATCAAAAGTATTACTTTGACCCTTTTAGGAACTATCCCTTTACAAAACGCCTTACAAATGCCTTTCCCCTACAGCCTCATGTTCTCCATCAAAGCAAGAGCGAATAGGTGCCATCTGCTTCCAACCTCCAAACCAAAACATCAAGCCCGGGGGATGGTGTACTGCTCTTCAACAAAGAAGAAAGGTTGCGCATTCCTCCATCTCCCTATCAAACCAACTTCTTCTCAAGTTGATGTCCCAATTACAACCTGATGGATTCCACAGATGCTGGACTTTGCTGGTAAAAAACTGCTTGTCAGATCAATGTCCTTCCAAGGACTAAAAGGCCCTTTCCAGTTTTTAAACTCAGTGAAATCTCTAGGGGAATTGACTCCAAATTTTCTTTTCACAACCATCCTCCAAGGCGCATCTTTTTCTTTCTCAAAGCTCCACAGCCACTTTGAATGAATGAAGAATTTCCACGCCCACGCCTCCCAAGAATGAGGAGCCTTAACTTTGCCCCACCTAACTAAATGACAGCCTTCAATTGGATCTGCCCCTTTCCAATGAAAGCTCAGACTGGGTCATTAAATTCGTAACTGACATTAATAAATACATACGATTTGGAGTTAAGGACACCATTACAATCATTTGTTCCTCATGTTCGTGAACTTTGTTACCTGTGCATCATATTCCTCCTTTTAACCTACGGTTTTTCATTAGGGTGGCAAATTTTTCTTCTTTGCTATTTTAGATCTACTTGCTTAAAAATGAATATTGCGTTTATGTCAGTACTTATCAGTGGTTAAATTGTTTTTAATTATATCTTTTCCATGTGCACAGTCACTCTCCCACCTTCCTGTGTACGATAAAAGGGCATTTTTGCAAAAGGATTTTCTAAGACTTTCAGTCATTTATTTATCCACATTCATTGACTTATAAAAACCCATGTATTAAACTAAAAGCTGAAGTGTATGTTCAGCAAGATCTTTTCTGCACTTTTGCCTCCCAATTTACAAAAGTAAATTATAAATGCGGATAACTGGTTTAGTGAATTGTATTCTTTTGTGTTGGTTTCTCAGACACTTTGGTCCGTCAGGCAGTGATGGTGATCAAGTGTGTTCTATTGATGTATTACAAGAACAGCAGAGGCCGCAATTATCGTAAACAGGTGAGGTAATATAGAAGTTGGCTCTTGTTTATTCATTGAACTCCTTTTTGAATCAGTAACAATTATTCATACAAAACGTGGAGTTTTGCTACAATGATGTCCTTTAATTGAGCTCATTGTTGATTTCTTTTTAAAATTCCTTTTTCCTCTAGTGAATAAAGTGGCAACTTTAGAATTTGCAAATGTTTGTCAGTCTGTGAGAACGGACTATTAACATTCACATTATCTCCAGGGTCAAATGTTAACTTTAGTCGAATATTTGCTGCTACTGTACCGTGCCTTATTGCCTACTCCCGTTTGGTATCGTTTCTTTTTGAACAAAGAGTACGGGAGCCTATTTTCGTCACTATTGACAGGACTGTACTTAACTTTCAAACTCACCTCTGTTGTCGAAAAGGTATGTTTTCTATTATTTGTTTATTTTTTTACTCATTTCTACTATTATAGTGAGGTTTTTTTGTCACTAGATGGTCTCTTTTGTCTGTTATCTTCCTTCCCCATCTCATATTTCTTTCAATGCGAATTTCAGGTGCAATCCTTCTTTGCTGCTTTGAAAGCACTGTCACGTAAAGAGGTGCATTATGGGGCATATGCAACGTCAGAGCAGGTAAATTGGATGTCATTTATGCATGCCTTTCTCCATTTAGCAAGCTTTCTTACCGTTGGATGCCGTTTATGTTTTCATCTCAATGCATTTAAATTTAATCCCACAAAAGCTGTTCTGTGGGATATTTGGTAGGAAAGAAAGCAAAGAACCTTTTAGGAAAGTCCTTGGAGTGGAATGAATAGTCTTGCTGAAGGCCATGCAGCTTTGTGGAGTGCAATCCCAAGTTCTTTTTGTATTTATGGCATGATTGGAGTGACTCTAAATTGATTAAATTACTTTTGTCATTTTCAAAAAATACCCAGAAAATGTTTTTAGACATTCAAAATCTATTTTAATAGTATAAAAAATATGTTTAAAAGTGTAAAATTAAACATTGAATTAATTTTGAGTGATTGAGTTTTGAAGTGATTTTAAACATGACATGATGACAAAAGTGTTTTAACCATTTCAAAATCACTCCCAAATATGCACTTAGTCTTATAACGTACTTTTCTAGATTTTGTTTGTTTATTTGTTTTCTTTCTGTTTTAGTGTGTTAACCATGTTTGTGGGATATTTCATGGCTATCTCTCTCATCCATGTTGTTATTATGGAGCTTGGCTTCTTGAATCTTTTGTTTATGGGCCCTCAGCATTGTTATTGTCCATCTTGGTTGTACATTTTCCTTTTTGATTCATTTGTTTTTTTTTGGGCTATTATTGTTCTCTCTTGTACAGGTTTCCTCTATATCTTTTGGGGTTTGGGGTTTTCTCCCATTGTACTCTTTGAATTATTTCATTCATCAATAAAATATTTCTTATAAAAAAAACCATGGTTGTGGATAGAGGATTGAACCATCAACTTTTGGGTAGTAATAAGTTCTTTGAACAATTGAGCTGTGTGCTCATGTTGGTGTCATCTCTTCTAGTTGGGGGCTGGCCTTTTTGTTTCTCTCGGTAGTCTATAGGGATTCCTACAAACTTCTCCTATAGGGGGAGTTATTGGTTGATGGCAATCTATTTGTAACTTATTTTCTAATAAAATAGGAACGGAGATAGAAAATATCCTTGAGATCTAACTTGTTATTTGCCTAATGCAGGTCAGCGCAGCTGGTGATTTGTGTGCTATTTGCCAAGAGAAGATGCATGCTCCTATCCTACTCCGATGTAAACACATATTTTGTGAAGATTGTGTATCAGAGTGGTAAGTTTATTGCATGAAATCCCCTATGCTTGAATACCTATCACAATCTGTATTCGACATAATATTAAACTGATGACTCTTTTCTAAGAGGAGATTGATTTCAATTTTAATATCCCATTATTGGTTTCCTCATTTTATGGCGTGGAGCCTTAAAGTTCAACCACGTTTTGATGTCCAATGATAAAATTACTTCATTCGCCATTTTTTCCATGTGAAAATGAAAGCATGCCTGAGTTTTTGCTCGAATATTTTTAGTAATAGTATTTGAGTGTTTAATAATCGCATGTTATAGCCATAGCTTAGTGGATAAGACATGATCTTGTTAGGACTTGATAACAATGTAAGTAGATGGATAGCCAATATTGCGGTGGTTTAGTCTTGAGTGAACTTGGAGGGTCCGATTACTTCGAATTAGGTGAGAGTTTCTTCTAGTATTTTCTTATGTTTTATCTTGGTTATGAATTTCTCATCTTGTTATCTAGTTCCTAAGGACATCTCAAACAAAACTATCATTTTCTGTCTGACTTTTATTAACCTGGACGTCGGAACAATAAAGGCCGAAGAAAGGAGAAACAATGGGTGGGAATATGTATATGCATGTGTTCTGTAACCTGCCTAATTTTAGTGTTATTATTATATTGTTCAATTTCGGATTGGATGGTGCTATGTGCAGGTTCGAGCGGGAACGAACGTGCCCATTGTGTAGGGCTTTGGTTAAACCCGCGGATCTCAGGTCATTTGGTGATGGATCAACAAGTCTGTTTTTCCAGGTTTTCTAAGCCATTTTCTTCAAGCCCCTCAGAGGCTTTGTGGTTTGAAGAGCGGAAGCCAGCCATTGCATTTTTACCTACACAAAATGTACATCTAACTAATACTGTGTAGCTGCTACTTTGGAGGAAGCAAAGGCTGGCGCTCGTGAACTCGGAAAGGGGAATTCGAAATCGACATGTATACATAAATAGTCCTCTTTGTGCTACAGATGAGGACGGTCGATGCTCGAGAGGAGTTTTTAACCCTTATAATATGCAAATTTGATGAATTTTTAGTCGGGTGTAAATTTAATATACCAAAGCCAGCTGCTGTGTTGATTTTATTTTAGTCCAAATCCATAAAATGAGAATGCTTTGGACTCTTAGAAATTGTTATATACACATACAGAATGTGAAACATGTTTTTGGCTCTACAGTTTGCTTGTGGATTTGAAAATTAAGAAAAGAAGTGAATATGATGAATTTTTAGAGT

mRNA sequence

GCCTGTTTGAAAATTGTGATCGGATATTGATAATGGAGAGCTGACCTTCTTCTTTCTCCCTTCACCCTTTGTTTTTCCCCTTTTTCTCTTGTTCGCCCTCTTTCCCTTCTTCCCTCGAGCTTCATAGGGCTCAAATTTCCGCCATTTTTGTATATCATCATCACCATCGAGACCCCAACAAAGCTTTTTTCCCATATTCTTTCATCTTATTTCGATCACCCTTCTTTTACTTCCACCATTTTCATCCATTCATTCCATCAAACCCTCCCCTTTTCACCCCTTTTCGTGATTCGCCGGTTTCTTTGACATTCTTTAATCCGATGATCGTGCCCCACTTGCTTGATTTCTGATTCACTATTGTTATTGTGTTATTGTCGTTGCTAGAAGTACTGTAGATCGGATTTTCTTATCTGGGTTGTTGCCATGTCGTGATTTTTCTTTATCTGAGGTTCTCCACGGAGTCTCGTTTGCGGAGAAGGGTTAGGCCATTCAGCCGAATGGAAGGGTCTGGTAGCGACCCCGACTCTCATAGAGCTGCTTCCACCAGTAGTAGTTCAAGAAGGTTTGGAATGTTATCTGCCTCGAATATTATTCAGGCTCCGCTTTCTGCGCTGTTAGAGTATTCGGGTCTTCTTCGCGGCCGCCCAAGTCATCAAGAATCTGAGGCATTGATAAGTGCGCGACTGCCTTCGGGGTTTCGAGACCATCTTCGCAGCCAGATTGAAGAATCTTCGGGTGCCACTAATGATGGAGAGGTTTCGATTAGGATAATTGGGGCAGGGGAACCAGAACATGGTAGGGATGGTGCTGGACTAGTAGTTGGGCAAGCAAGGGAAGTTAGTGGTCAGAATGCGGTGTCTTTGCAATCTGTTTCGGGGTTGGCATCTGTGACCTTGGGGTCGGATCTTAGCCAGGGCAATTCTGCTACTGAACGCGGTGCAAGAGAGGGCATTCCTCAATCGATAAATGGAAATGCTGATGGAGATGCCTCGGAGGCGGCTGGGGGAAATAGCAGGGATTCTTCTTATCAGAGGTATGATATTCAACAGGCTGCTCGGGGGATTGAGCAGATTCTCCCATTTAGTTTCCTTCTACTGGTGGTCTTCATTCGACAGCATTTGCAAGTAGCCAGAAAGATTTGGACAATCATGAACTACTGCATCGTCTTTATGCAGCAAGCATATGTGCTCTTTAGCTTTATTAATGATGACCTTTTATATCCATTGATCATGCTTCCCCCAAGAGCGATTCCTCCTTTTTGGCATGCTATTTTCATCATCATGGTGAATGGTAACCTTCTGTTAAAGTTTTCACTGATTATTACTGAACTATCCCTTTACAAAACGCCTTACAAATGCCTTTCCCCTACAGCCTCATGTTCTCCATCAAAGCAAGAGCGAATAGGTGCCATCTGCTTCCAACCTCCAAACCAAAACATCAAGCCCGGGGGATGGTGTACTGCTCTTCAACAAAGAAGAAAGGTTGCGCATTCCTCCATCTCCCTATCAAACCAACTTCTTCTCAAGTTGATGTCCCAATTACAACCTGATGGATTCCACAGATGCTGGACTTTGCTGGCAGTGATGGTGATCAAGTGTGTTCTATTGATGTATTACAAGAACAGCAGAGGCCGCAATTATCGTAAACAGGGTCAAATGTTAACTTTAGTCGAATATTTGCTGCTACTGTACCGTGCCTTATTGCCTACTCCCGTTTGGTATCGTTTCTTTTTGAACAAAGAGTACGGGAGCCTATTTTCGTCACTATTGACAGGACTGTACTTAACTTTCAAACTCACCTCTGTTGTCGAAAAGGTGCAATCCTTCTTTGCTGCTTTGAAAGCACTGTCACGTAAAGAGGTGCATTATGGGGCATATGCAACGTCAGAGCAGGTCAGCGCAGCTGGTGATTTGTGTGCTATTTGCCAAGAGAAGATGCATGCTCCTATCCTACTCCGATGTTCGAGCGGGAACGAACGTGCCCATTGTGTAGGGCTTTGGTTAAACCCGCGGATCTCAGGTCATTTGGTGATGGATCAACAAGTCTGTTTTTCCAGGTTTTCTAAGCCATTTTCTTCAAGCCCCTCAGAGGCTTTGTGGTTTGAAGAGCGGAAGCCAGCCATTGCATTTTTACCTACACAAAATGTACATCTAACTAATACTGTGTAGCTGCTACTTTGGAGGAAGCAAAGGCTGGCGCTCGTGAACTCGGAAAGGGGAATTCGAAATCGACATGTATACATAAATAGTCCTCTTTGTGCTACAGATGAGGACGGTCGATGCTCGAGAGGAGTTTTTAACCCTTATAATATGCAAATTTGATGAATTTTTAGTCGGGTGTAAATTTAATATACCAAAGCCAGCTGCTGTGTTGATTTTATTTTAGTCCAAATCCATAAAATGAGAATGCTTTGGACTCTTAGAAATTGTTATATACACATACAGAATGTGAAACATGTTTTTGGCTCTACAGTTTGCTTGTGGATTTGAAAATTAAGAAAAGAAGTGAATATGATGAATTTTTAGAGT

Coding sequence (CDS)

ATGGAAGGGTCTGGTAGCGACCCCGACTCTCATAGAGCTGCTTCCACCAGTAGTAGTTCAAGAAGGTTTGGAATGTTATCTGCCTCGAATATTATTCAGGCTCCGCTTTCTGCGCTGTTAGAGTATTCGGGTCTTCTTCGCGGCCGCCCAAGTCATCAAGAATCTGAGGCATTGATAAGTGCGCGACTGCCTTCGGGGTTTCGAGACCATCTTCGCAGCCAGATTGAAGAATCTTCGGGTGCCACTAATGATGGAGAGGTTTCGATTAGGATAATTGGGGCAGGGGAACCAGAACATGGTAGGGATGGTGCTGGACTAGTAGTTGGGCAAGCAAGGGAAGTTAGTGGTCAGAATGCGGTGTCTTTGCAATCTGTTTCGGGGTTGGCATCTGTGACCTTGGGGTCGGATCTTAGCCAGGGCAATTCTGCTACTGAACGCGGTGCAAGAGAGGGCATTCCTCAATCGATAAATGGAAATGCTGATGGAGATGCCTCGGAGGCGGCTGGGGGAAATAGCAGGGATTCTTCTTATCAGAGGTATGATATTCAACAGGCTGCTCGGGGGATTGAGCAGATTCTCCCATTTAGTTTCCTTCTACTGGTGGTCTTCATTCGACAGCATTTGCAAGTAGCCAGAAAGATTTGGACAATCATGAACTACTGCATCGTCTTTATGCAGCAAGCATATGTGCTCTTTAGCTTTATTAATGATGACCTTTTATATCCATTGATCATGCTTCCCCCAAGAGCGATTCCTCCTTTTTGGCATGCTATTTTCATCATCATGGTGAATGGTAACCTTCTGTTAAAGTTTTCACTGATTATTACTGAACTATCCCTTTACAAAACGCCTTACAAATGCCTTTCCCCTACAGCCTCATGTTCTCCATCAAAGCAAGAGCGAATAGGTGCCATCTGCTTCCAACCTCCAAACCAAAACATCAAGCCCGGGGGATGGTGTACTGCTCTTCAACAAAGAAGAAAGGTTGCGCATTCCTCCATCTCCCTATCAAACCAACTTCTTCTCAAGTTGATGTCCCAATTACAACCTGATGGATTCCACAGATGCTGGACTTTGCTGGCAGTGATGGTGATCAAGTGTGTTCTATTGATGTATTACAAGAACAGCAGAGGCCGCAATTATCGTAAACAGGGTCAAATGTTAACTTTAGTCGAATATTTGCTGCTACTGTACCGTGCCTTATTGCCTACTCCCGTTTGGTATCGTTTCTTTTTGAACAAAGAGTACGGGAGCCTATTTTCGTCACTATTGACAGGACTGTACTTAACTTTCAAACTCACCTCTGTTGTCGAAAAGGTGCAATCCTTCTTTGCTGCTTTGAAAGCACTGTCACGTAAAGAGGTGCATTATGGGGCATATGCAACGTCAGAGCAGGTCAGCGCAGCTGGTGATTTGTGTGCTATTTGCCAAGAGAAGATGCATGCTCCTATCCTACTCCGATGTTCGAGCGGGAACGAACGTGCCCATTGTGTAGGGCTTTGGTTAAACCCGCGGATCTCAGGTCATTTGGTGATGGATCAACAAGTCTGTTTTTCCAGGTTTTCTAAGCCATTTTCTTCAAGCCCCTCAGAGGCTTTGTGGTTTGAAGAGCGGAAGCCAGCCATTGCATTTTTACCTACACAAAATGTACATCTAACTAATACTGTGTAG

Protein sequence

MEGSGSDPDSHRAASTSSSSRRFGMLSASNIIQAPLSALLEYSGLLRGRPSHQESEALISARLPSGFRDHLRSQIEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQAREVSGQNAVSLQSVSGLASVTLGSDLSQGNSATERGAREGIPQSINGNADGDASEAAGGNSRDSSYQRYDIQQAARGIEQILPFSFLLLVVFIRQHLQVARKIWTIMNYCIVFMQQAYVLFSFINDDLLYPLIMLPPRAIPPFWHAIFIIMVNGNLLLKFSLIITELSLYKTPYKCLSPTASCSPSKQERIGAICFQPPNQNIKPGGWCTALQQRRKVAHSSISLSNQLLLKLMSQLQPDGFHRCWTLLAVMVIKCVLLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRKEVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRCSSGNERAHCVGLWLNPRISGHLVMDQQVCFSRFSKPFSSSPSEALWFEERKPAIAFLPTQNVHLTNTV

Homology

[Close]

BLAST of Clc04G06470 vs. NCBI nr
Match: XP_038881776.1 (RING finger and transmembrane domain-containing protein 2 [Benincasa hispida])

HSP 1 Score: 614.4 bits (1583), Expect = 9.8e-172
Identity = 362/515 (70.29%), Postives = 374/515 (72.62%), Query Frame = 0


Query: 1   MEGSGSDPDSHRAASTSSSSRRFGMLSASNIIQAPLSALLEYSGLLRGRPSHQESEALIS 60
           MEGSGSDPDSHRAAST SSSRRFGML+ASNIIQAPLSALLEYSGLLRGRPSHQESEALIS
Sbjct: 1   MEGSGSDPDSHRAAST-SSSRRFGMLAASNIIQAPLSALLEYSGLLRGRPSHQESEALIS 60

Query: 61  ARLPSGFRDHLRSQIEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQAREVSGQNAV 120
           ARLPSGFRDHLRSQIEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQARE SGQN V
Sbjct: 61  ARLPSGFRDHLRSQIEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQAREGSGQNTV 120

Query: 121 SLQSVSGLASVTLGSDLSQGNSATERGAREGIPQSINGNADGDASEAAGGNSRDSSYQRY 180
           SLQSVSGLASVTL S+LSQG SATERGAREGIPQSIN +ADGDASEAAGGNSRDSSYQRY
Sbjct: 121 SLQSVSGLASVTLASELSQGESATERGAREGIPQSINASADGDASEAAGGNSRDSSYQRY 180

Query: 181 DIQQAARGIEQILPFSFLLLVVFIRQHLQ--------------------------VARKI 240
           DIQQAARGIEQILPFSFLLLVVFIRQHLQ                            RKI
Sbjct: 181 DIQQAARGIEQILPFSFLLLVVFIRQHLQGFFVTIWIAAFMYKSNDILRKQTALKGERKI 240

Query: 241 WTIMNYCIVF-MQQAYVLFSFINDDLLYPLIMLPPRAIPPFWHAIFIIMVNGNLLLKFSL 300
             ++   + F +    V + + NDDLLYPLIMLPPRAIPPFWHAIFIIMVN  L+ +   
Sbjct: 241 SVLVGISLAFTIHVIGVYWWYQNDDLLYPLIMLPPRAIPPFWHAIFIIMVNDTLVRQ--- 300

Query: 301 IITELSLYKTPYKCLSPTASCSPSKQERIGAICFQPPNQNIKPGGWCTALQQRRKVAHSS 360
                                                                       
Sbjct: 301 ------------------------------------------------------------ 360

Query: 361 ISLSNQLLLKLMSQLQPDGFHRCWTLLAVMVIKCVLLMYYKNSRGRNYRKQGQMLTLVEY 420
                                      AVMV+KCVLLMYYKNSRGRNYRKQGQMLTLVEY
Sbjct: 361 ---------------------------AVMVVKCVLLMYYKNSRGRNYRKQGQMLTLVEY 420

Query: 421 LLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRK 480
           LLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRK
Sbjct: 421 LLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRK 424

Query: 481 EVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRC 489
           EVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRC
Sbjct: 481 EVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRC 424

[Close]

BLAST of Clc04G06470 vs. NCBI nr
Match: XP_004142726.1 (RING finger and transmembrane domain-containing protein 2 isoform X2 [Cucumis sativus] >KGN54474.1 hypothetical protein Csa_012295 [Cucumis sativus])

HSP 1 Score: 612.5 bits (1578), Expect = 3.7e-171
Identity = 359/515 (69.71%), Postives = 372/515 (72.23%), Query Frame = 0


Query: 1   MEGSGSDPDSHRAASTSSSSRRFGMLSASNIIQAPLSALLEYSGLLRGRPSHQESEALIS 60
           MEGSGSDPDSHRAASTS SSRRFGML+ASNIIQAPLSALLEYSGLLRGR SHQESEALIS
Sbjct: 1   MEGSGSDPDSHRAASTSGSSRRFGMLAASNIIQAPLSALLEYSGLLRGRQSHQESEALIS 60

Query: 61  ARLPSGFRDHLRSQIEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQAREVSGQNAV 120
           ARLPSGFRDHLRS IEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQAR+VSGQNAV
Sbjct: 61  ARLPSGFRDHLRSHIEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQARDVSGQNAV 120

Query: 121 SLQSVSGLASVTLGSDLSQGNSATERGAREGIPQSINGNADGDASEAAGGNSRDSSYQRY 180
           SLQSVSGLASVTLGS+LSQG SA ERGAREGIP+SIN  ADGDASEAAGGNSRDSSYQRY
Sbjct: 121 SLQSVSGLASVTLGSELSQGESANERGAREGIPESINAGADGDASEAAGGNSRDSSYQRY 180

Query: 181 DIQQAARGIEQILPFSFLLLVVFIRQHLQ--------------------------VARKI 240
           DIQQAARGIEQILPFSFLLLVVFIRQHLQ                            RKI
Sbjct: 181 DIQQAARGIEQILPFSFLLLVVFIRQHLQGFFVTIWIAAFMYKSNDILRKQTALKGERKI 240

Query: 241 WTIMNYCIVF-MQQAYVLFSFINDDLLYPLIMLPPRAIPPFWHAIFIIMVNGNLLLKFSL 300
             ++   + F +    V + + NDDLLYPLIM PPRAIPPFWHAIFIIMVN  L+ +   
Sbjct: 241 SVLVCISLAFTIHVIGVYWWYQNDDLLYPLIMCPPRAIPPFWHAIFIIMVNDTLVRQ--- 300

Query: 301 IITELSLYKTPYKCLSPTASCSPSKQERIGAICFQPPNQNIKPGGWCTALQQRRKVAHSS 360
                                                                       
Sbjct: 301 ------------------------------------------------------------ 360

Query: 361 ISLSNQLLLKLMSQLQPDGFHRCWTLLAVMVIKCVLLMYYKNSRGRNYRKQGQMLTLVEY 420
                                      AVMV+KCVLLMYYKNSRGRNYRKQGQMLTLVEY
Sbjct: 361 ---------------------------AVMVVKCVLLMYYKNSRGRNYRKQGQMLTLVEY 420

Query: 421 LLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRK 480
           LLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRK
Sbjct: 421 LLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRK 425

Query: 481 EVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRC 489
           EVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRC
Sbjct: 481 EVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRC 425

[Close]

BLAST of Clc04G06470 vs. NCBI nr
Match: XP_031740196.1 (RING finger and transmembrane domain-containing protein 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 612.5 bits (1578), Expect = 3.7e-171
Identity = 359/515 (69.71%), Postives = 372/515 (72.23%), Query Frame = 0


Query: 1   MEGSGSDPDSHRAASTSSSSRRFGMLSASNIIQAPLSALLEYSGLLRGRPSHQESEALIS 60
           MEGSGSDPDSHRAASTS SSRRFGML+ASNIIQAPLSALLEYSGLLRGR SHQESEALIS
Sbjct: 11  MEGSGSDPDSHRAASTSGSSRRFGMLAASNIIQAPLSALLEYSGLLRGRQSHQESEALIS 70

Query: 61  ARLPSGFRDHLRSQIEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQAREVSGQNAV 120
           ARLPSGFRDHLRS IEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQAR+VSGQNAV
Sbjct: 71  ARLPSGFRDHLRSHIEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQARDVSGQNAV 130

Query: 121 SLQSVSGLASVTLGSDLSQGNSATERGAREGIPQSINGNADGDASEAAGGNSRDSSYQRY 180
           SLQSVSGLASVTLGS+LSQG SA ERGAREGIP+SIN  ADGDASEAAGGNSRDSSYQRY
Sbjct: 131 SLQSVSGLASVTLGSELSQGESANERGAREGIPESINAGADGDASEAAGGNSRDSSYQRY 190

Query: 181 DIQQAARGIEQILPFSFLLLVVFIRQHLQ--------------------------VARKI 240
           DIQQAARGIEQILPFSFLLLVVFIRQHLQ                            RKI
Sbjct: 191 DIQQAARGIEQILPFSFLLLVVFIRQHLQGFFVTIWIAAFMYKSNDILRKQTALKGERKI 250

Query: 241 WTIMNYCIVF-MQQAYVLFSFINDDLLYPLIMLPPRAIPPFWHAIFIIMVNGNLLLKFSL 300
             ++   + F +    V + + NDDLLYPLIM PPRAIPPFWHAIFIIMVN  L+ +   
Sbjct: 251 SVLVCISLAFTIHVIGVYWWYQNDDLLYPLIMCPPRAIPPFWHAIFIIMVNDTLVRQ--- 310

Query: 301 IITELSLYKTPYKCLSPTASCSPSKQERIGAICFQPPNQNIKPGGWCTALQQRRKVAHSS 360
                                                                       
Sbjct: 311 ------------------------------------------------------------ 370

Query: 361 ISLSNQLLLKLMSQLQPDGFHRCWTLLAVMVIKCVLLMYYKNSRGRNYRKQGQMLTLVEY 420
                                      AVMV+KCVLLMYYKNSRGRNYRKQGQMLTLVEY
Sbjct: 371 ---------------------------AVMVVKCVLLMYYKNSRGRNYRKQGQMLTLVEY 430

Query: 421 LLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRK 480
           LLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRK
Sbjct: 431 LLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRK 435

Query: 481 EVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRC 489
           EVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRC
Sbjct: 491 EVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRC 435

[Close]

BLAST of Clc04G06470 vs. NCBI nr
Match: XP_008463298.1 (PREDICTED: RING finger and transmembrane domain-containing protein 2 [Cucumis melo])

HSP 1 Score: 607.4 bits (1565), Expect = 1.2e-169
Identity = 356/515 (69.13%), Postives = 369/515 (71.65%), Query Frame = 0


Query: 1   MEGSGSDPDSHRAASTSSSSRRFGMLSASNIIQAPLSALLEYSGLLRGRPSHQESEALIS 60
           MEGSGSDPDSHR ASTS SSRRFGML+ASNIIQAPLSALLEYSGLLRGR SHQESEALIS
Sbjct: 1   MEGSGSDPDSHRPASTSGSSRRFGMLAASNIIQAPLSALLEYSGLLRGRQSHQESEALIS 60

Query: 61  ARLPSGFRDHLRSQIEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQAREVSGQNAV 120
           ARLPSGFRDHLRS IEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQAR+VSGQNAV
Sbjct: 61  ARLPSGFRDHLRSHIEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQARDVSGQNAV 120

Query: 121 SLQSVSGLASVTLGSDLSQGNSATERGAREGIPQSINGNADGDASEAAGGNSRDSSYQRY 180
           SLQSVSGLASVTLGS+LSQG SA ERGAREGIP+SIN  ADGD SE AGGNSRDSSYQRY
Sbjct: 121 SLQSVSGLASVTLGSELSQGESANERGAREGIPESINAGADGDTSEVAGGNSRDSSYQRY 180

Query: 181 DIQQAARGIEQILPFSFLLLVVFIRQHLQ--------------------------VARKI 240
           DIQQAARGIEQILPFSFLLLVVFIRQHLQ                            RKI
Sbjct: 181 DIQQAARGIEQILPFSFLLLVVFIRQHLQGFFVTIWIAAFMYKSNDILRKQTALKGERKI 240

Query: 241 WTIMNYCIVF-MQQAYVLFSFINDDLLYPLIMLPPRAIPPFWHAIFIIMVNGNLLLKFSL 300
             ++   + F +    V + + NDDLLYPLIM PPRAIPPFWHAIFIIMVN  L+ +   
Sbjct: 241 SVLVCISLAFTIHVIGVYWWYQNDDLLYPLIMCPPRAIPPFWHAIFIIMVNDTLVRQ--- 300

Query: 301 IITELSLYKTPYKCLSPTASCSPSKQERIGAICFQPPNQNIKPGGWCTALQQRRKVAHSS 360
                                                                       
Sbjct: 301 ------------------------------------------------------------ 360

Query: 361 ISLSNQLLLKLMSQLQPDGFHRCWTLLAVMVIKCVLLMYYKNSRGRNYRKQGQMLTLVEY 420
                                      AVMV+KCVLLMYYKNSRGRNYRKQGQMLTLVEY
Sbjct: 361 ---------------------------AVMVVKCVLLMYYKNSRGRNYRKQGQMLTLVEY 420

Query: 421 LLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRK 480
           LLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRK
Sbjct: 421 LLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRK 425

Query: 481 EVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRC 489
           EVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRC
Sbjct: 481 EVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRC 425

[Close]

BLAST of Clc04G06470 vs. NCBI nr
Match: TYK06212.1 (RING finger and transmembrane domain-containing protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 607.4 bits (1565), Expect = 1.2e-169
Identity = 356/515 (69.13%), Postives = 369/515 (71.65%), Query Frame = 0


Query: 1   MEGSGSDPDSHRAASTSSSSRRFGMLSASNIIQAPLSALLEYSGLLRGRPSHQESEALIS 60
           MEGSGSDPDSHR ASTS SSRRFGML+ASNIIQAPLSALLEYSGLLRGR SHQESEALIS
Sbjct: 45  MEGSGSDPDSHRPASTSGSSRRFGMLAASNIIQAPLSALLEYSGLLRGRQSHQESEALIS 104

Query: 61  ARLPSGFRDHLRSQIEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQAREVSGQNAV 120
           ARLPSGFRDHLRS IEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQAR+VSGQNAV
Sbjct: 105 ARLPSGFRDHLRSHIEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQARDVSGQNAV 164

Query: 121 SLQSVSGLASVTLGSDLSQGNSATERGAREGIPQSINGNADGDASEAAGGNSRDSSYQRY 180
           SLQSVSGLASVTLGS+LSQG SA ERGAREGIP+SIN  ADGD SE AGGNSRDSSYQRY
Sbjct: 165 SLQSVSGLASVTLGSELSQGESANERGAREGIPESINAGADGDTSEVAGGNSRDSSYQRY 224

Query: 181 DIQQAARGIEQILPFSFLLLVVFIRQHLQ--------------------------VARKI 240
           DIQQAARGIEQILPFSFLLLVVFIRQHLQ                            RKI
Sbjct: 225 DIQQAARGIEQILPFSFLLLVVFIRQHLQGFFVTIWIAAFMYKSNDILRKQTALKGERKI 284

Query: 241 WTIMNYCIVF-MQQAYVLFSFINDDLLYPLIMLPPRAIPPFWHAIFIIMVNGNLLLKFSL 300
             ++   + F +    V + + NDDLLYPLIM PPRAIPPFWHAIFIIMVN  L+ +   
Sbjct: 285 SVLVCISLAFTIHVIGVYWWYQNDDLLYPLIMCPPRAIPPFWHAIFIIMVNDTLVRQ--- 344

Query: 301 IITELSLYKTPYKCLSPTASCSPSKQERIGAICFQPPNQNIKPGGWCTALQQRRKVAHSS 360
                                                                       
Sbjct: 345 ------------------------------------------------------------ 404

Query: 361 ISLSNQLLLKLMSQLQPDGFHRCWTLLAVMVIKCVLLMYYKNSRGRNYRKQGQMLTLVEY 420
                                      AVMV+KCVLLMYYKNSRGRNYRKQGQMLTLVEY
Sbjct: 405 ---------------------------AVMVVKCVLLMYYKNSRGRNYRKQGQMLTLVEY 464

Query: 421 LLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRK 480
           LLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRK
Sbjct: 465 LLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRK 469

Query: 481 EVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRC 489
           EVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRC
Sbjct: 525 EVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRC 469

[Close]

BLAST of Clc04G06470 vs. ExPASy Swiss-Prot
Match: Q5RAG4 (RING finger and transmembrane domain-containing protein 2 OS=Pongo abelii OX=9601 GN=RNFT2 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.8e-09
Identity = 38/124 (30.65%), Postives = 66/124 (53.23%), Query Frame = 0


Query: 382 RKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLF--SSLLTGLYLTFKLTSVVEK 441
           + +G+   ++E L  L+R+L+P  +WY++ +  +  + +    +L  LY   K   +  +
Sbjct: 292 KSKGKFYLVIEELSQLFRSLVPIQLWYKYIMGDDSSNSYFLGGVLIVLYSLCKSFDICGR 351

Query: 442 VQSFFAALKALSRKEVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRCSSGNERAHCVG 501
           V     ALK L   + +YG  AT +Q + AGD+CAICQ +   P++L C        C+ 
Sbjct: 352 VGGVRKALKLLCTSQ-NYGVRATGQQCTEAGDICAICQAEFREPLILLCQH-VFCEECLC 411

Query: 502 LWLN 504
           LWL+
Sbjct: 412 LWLD 413

[Close]

BLAST of Clc04G06470 vs. ExPASy Swiss-Prot
Match: Q96EX2 (RING finger and transmembrane domain-containing protein 2 OS=Homo sapiens OX=9606 GN=RNFT2 PE=2 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 4.9e-09
Identity = 49/182 (26.92%), Postives = 85/182 (46.70%), Query Frame = 0


Query: 332 SSISLSNQLLLKLMSQLQPDGFHRCWTL--------LAVMVIKCVLLMYYKNSRGRNYRK 391
           SS  L N L+    +    D F   W +           + +KC+++   K       + 
Sbjct: 236 SSQQLYNSLIFLKPNLEMLDFFDLLWIVGIADFVLKYITIALKCLIVALPKIILA--VKS 295

Query: 392 QGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLF--SSLLTGLYLTFKLTSVVEKVQ 451
           +G+   ++E L  L+R+L+P  +WY++ +  +  + +    +L  LY   K   +  +V 
Sbjct: 296 KGKFYLVIEELSQLFRSLVPIQLWYKYIMGDDSSNSYFLGGVLIVLYSLCKSFDICGRVG 355

Query: 452 SFFAALKALSRKEVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRCSSGNERAHCVGLW 504
               ALK L   + +YG  AT +Q + AGD+CAICQ +   P++L C        C+ LW
Sbjct: 356 GVRKALKLLCTSQ-NYGVRATGQQCTEAGDICAICQAEFREPLILLCQH-VFCEECLCLW 413

[Close]

BLAST of Clc04G06470 vs. ExPASy Swiss-Prot
Match: Q6NTV1 (E3 ubiquitin-protein ligase RNFT1 OS=Xenopus laevis OX=8355 GN=rnft1 PE=2 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 4.2e-08
Identity = 46/148 (31.08%), Postives = 72/148 (48.65%), Query Frame = 0


Query: 363 MVIKCVLLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSL--- 422
           M +KC++L+    S   +++ +G     +E L   Y  L+ TPVW+R+ +  +YG+L   
Sbjct: 244 MGLKCIILLV--PSFVMSHKSKGYWYMALEELAQCYCTLVSTPVWFRYLI--DYGNLDSG 303

Query: 423 ----FSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRKEVHYGAYATSEQVSAAGDLCAI 482
               F  LL  LYL  K+  +  + ++    L+ L   + +YG  AT  Q S A  +CAI
Sbjct: 304 AEWHFGILLALLYLILKILIIFGQRKTSSDCLR-LFLSQPNYGTTATKRQCSEADGMCAI 363

Query: 483 CQEKMHAPILLRCSSGNERAHCVGLWLN 504
           CQ +   PI L C        C+  W N
Sbjct: 364 CQAEFTKPIALICQH-VFCEECISSWFN 385

[Close]

BLAST of Clc04G06470 vs. ExPASy Swiss-Prot
Match: Q28GL3 (E3 ubiquitin-protein ligase RNFT1 OS=Xenopus tropicalis OX=8364 GN=rnft1 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.5e-08
Identity = 46/148 (31.08%), Postives = 74/148 (50.00%), Query Frame = 0


Query: 363 MVIKCVLLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSL--- 422
           M +KC++L+    S   +++ +G     +E +   Y  L+ TPVW+R+ +  +YG+    
Sbjct: 244 MGLKCIILLV--PSFVMSHKSKGYWYMALEEVAQCYCMLVSTPVWFRYLI--DYGNQNSG 303

Query: 423 ----FSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRKEVHYGAYATSEQVSAAGDLCAI 482
               F  LL  LYL  KL  +  + ++   +L+ L   + +YGA AT  Q S    +CAI
Sbjct: 304 AEWHFGILLALLYLILKLLIIFGQRKTSSNSLR-LFLTQPNYGAAATKSQCSEVDGMCAI 363

Query: 483 CQEKMHAPILLRCSSGNERAHCVGLWLN 504
           CQ +   PI+L C        C+ LW N
Sbjct: 364 CQAEFIKPIVLVCQH-VFCEECISLWFN 385

[Close]

BLAST of Clc04G06470 vs. ExPASy Swiss-Prot
Match: Q3UF64 (RING finger and transmembrane domain-containing protein 2 OS=Mus musculus OX=10090 GN=Rnft2 PE=2 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 5.5e-08
Identity = 37/124 (29.84%), Postives = 65/124 (52.42%), Query Frame = 0


Query: 382 RKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLF--SSLLTGLYLTFKLTSVVEK 441
           + +G+   ++E L  L+R+L+P  +WY++ +  +  + +    +L  LY   K   +  +
Sbjct: 293 KSKGKFYLVIEELSQLFRSLVPIQLWYKYIMGDDSSNSYFLGGVLIVLYSLCKSFDICGR 352

Query: 442 VQSFFAALKALSRKEVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRCSSGNERAHCVG 501
           V     ALK L   + +YG  AT +Q + AG +CAICQ +   P++L C        C+ 
Sbjct: 353 VGGLRKALKLLCTSQ-NYGVRATGQQCTEAGAVCAICQAEFRDPMILLCQH-VFCEECLC 412

Query: 502 LWLN 504
           LWL+
Sbjct: 413 LWLD 414

[Close]

BLAST of Clc04G06470 vs. ExPASy TrEMBL
Match: A0A0A0L088 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G337310 PE=4 SV=1)

HSP 1 Score: 612.5 bits (1578), Expect = 1.8e-171
Identity = 359/515 (69.71%), Postives = 372/515 (72.23%), Query Frame = 0


Query: 1   MEGSGSDPDSHRAASTSSSSRRFGMLSASNIIQAPLSALLEYSGLLRGRPSHQESEALIS 60
           MEGSGSDPDSHRAASTS SSRRFGML+ASNIIQAPLSALLEYSGLLRGR SHQESEALIS
Sbjct: 1   MEGSGSDPDSHRAASTSGSSRRFGMLAASNIIQAPLSALLEYSGLLRGRQSHQESEALIS 60

Query: 61  ARLPSGFRDHLRSQIEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQAREVSGQNAV 120
           ARLPSGFRDHLRS IEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQAR+VSGQNAV
Sbjct: 61  ARLPSGFRDHLRSHIEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQARDVSGQNAV 120

Query: 121 SLQSVSGLASVTLGSDLSQGNSATERGAREGIPQSINGNADGDASEAAGGNSRDSSYQRY 180
           SLQSVSGLASVTLGS+LSQG SA ERGAREGIP+SIN  ADGDASEAAGGNSRDSSYQRY
Sbjct: 121 SLQSVSGLASVTLGSELSQGESANERGAREGIPESINAGADGDASEAAGGNSRDSSYQRY 180

Query: 181 DIQQAARGIEQILPFSFLLLVVFIRQHLQ--------------------------VARKI 240
           DIQQAARGIEQILPFSFLLLVVFIRQHLQ                            RKI
Sbjct: 181 DIQQAARGIEQILPFSFLLLVVFIRQHLQGFFVTIWIAAFMYKSNDILRKQTALKGERKI 240

Query: 241 WTIMNYCIVF-MQQAYVLFSFINDDLLYPLIMLPPRAIPPFWHAIFIIMVNGNLLLKFSL 300
             ++   + F +    V + + NDDLLYPLIM PPRAIPPFWHAIFIIMVN  L+ +   
Sbjct: 241 SVLVCISLAFTIHVIGVYWWYQNDDLLYPLIMCPPRAIPPFWHAIFIIMVNDTLVRQ--- 300

Query: 301 IITELSLYKTPYKCLSPTASCSPSKQERIGAICFQPPNQNIKPGGWCTALQQRRKVAHSS 360
                                                                       
Sbjct: 301 ------------------------------------------------------------ 360

Query: 361 ISLSNQLLLKLMSQLQPDGFHRCWTLLAVMVIKCVLLMYYKNSRGRNYRKQGQMLTLVEY 420
                                      AVMV+KCVLLMYYKNSRGRNYRKQGQMLTLVEY
Sbjct: 361 ---------------------------AVMVVKCVLLMYYKNSRGRNYRKQGQMLTLVEY 420

Query: 421 LLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRK 480
           LLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRK
Sbjct: 421 LLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRK 425

Query: 481 EVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRC 489
           EVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRC
Sbjct: 481 EVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRC 425

[Close]

BLAST of Clc04G06470 vs. ExPASy TrEMBL
Match: A0A5D3C4Q1 (RING finger and transmembrane domain-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00740 PE=4 SV=1)

HSP 1 Score: 607.4 bits (1565), Expect = 5.8e-170
Identity = 356/515 (69.13%), Postives = 369/515 (71.65%), Query Frame = 0


Query: 1   MEGSGSDPDSHRAASTSSSSRRFGMLSASNIIQAPLSALLEYSGLLRGRPSHQESEALIS 60
           MEGSGSDPDSHR ASTS SSRRFGML+ASNIIQAPLSALLEYSGLLRGR SHQESEALIS
Sbjct: 45  MEGSGSDPDSHRPASTSGSSRRFGMLAASNIIQAPLSALLEYSGLLRGRQSHQESEALIS 104

Query: 61  ARLPSGFRDHLRSQIEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQAREVSGQNAV 120
           ARLPSGFRDHLRS IEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQAR+VSGQNAV
Sbjct: 105 ARLPSGFRDHLRSHIEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQARDVSGQNAV 164

Query: 121 SLQSVSGLASVTLGSDLSQGNSATERGAREGIPQSINGNADGDASEAAGGNSRDSSYQRY 180
           SLQSVSGLASVTLGS+LSQG SA ERGAREGIP+SIN  ADGD SE AGGNSRDSSYQRY
Sbjct: 165 SLQSVSGLASVTLGSELSQGESANERGAREGIPESINAGADGDTSEVAGGNSRDSSYQRY 224

Query: 181 DIQQAARGIEQILPFSFLLLVVFIRQHLQ--------------------------VARKI 240
           DIQQAARGIEQILPFSFLLLVVFIRQHLQ                            RKI
Sbjct: 225 DIQQAARGIEQILPFSFLLLVVFIRQHLQGFFVTIWIAAFMYKSNDILRKQTALKGERKI 284

Query: 241 WTIMNYCIVF-MQQAYVLFSFINDDLLYPLIMLPPRAIPPFWHAIFIIMVNGNLLLKFSL 300
             ++   + F +    V + + NDDLLYPLIM PPRAIPPFWHAIFIIMVN  L+ +   
Sbjct: 285 SVLVCISLAFTIHVIGVYWWYQNDDLLYPLIMCPPRAIPPFWHAIFIIMVNDTLVRQ--- 344

Query: 301 IITELSLYKTPYKCLSPTASCSPSKQERIGAICFQPPNQNIKPGGWCTALQQRRKVAHSS 360
                                                                       
Sbjct: 345 ------------------------------------------------------------ 404

Query: 361 ISLSNQLLLKLMSQLQPDGFHRCWTLLAVMVIKCVLLMYYKNSRGRNYRKQGQMLTLVEY 420
                                      AVMV+KCVLLMYYKNSRGRNYRKQGQMLTLVEY
Sbjct: 405 ---------------------------AVMVVKCVLLMYYKNSRGRNYRKQGQMLTLVEY 464

Query: 421 LLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRK 480
           LLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRK
Sbjct: 465 LLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRK 469

Query: 481 EVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRC 489
           EVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRC
Sbjct: 525 EVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRC 469

[Close]

BLAST of Clc04G06470 vs. ExPASy TrEMBL
Match: A0A1S3CIV8 (RING finger and transmembrane domain-containing protein 2 OS=Cucumis melo OX=3656 GN=LOC103501489 PE=4 SV=1)

HSP 1 Score: 607.4 bits (1565), Expect = 5.8e-170
Identity = 356/515 (69.13%), Postives = 369/515 (71.65%), Query Frame = 0


Query: 1   MEGSGSDPDSHRAASTSSSSRRFGMLSASNIIQAPLSALLEYSGLLRGRPSHQESEALIS 60
           MEGSGSDPDSHR ASTS SSRRFGML+ASNIIQAPLSALLEYSGLLRGR SHQESEALIS
Sbjct: 1   MEGSGSDPDSHRPASTSGSSRRFGMLAASNIIQAPLSALLEYSGLLRGRQSHQESEALIS 60

Query: 61  ARLPSGFRDHLRSQIEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQAREVSGQNAV 120
           ARLPSGFRDHLRS IEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQAR+VSGQNAV
Sbjct: 61  ARLPSGFRDHLRSHIEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQARDVSGQNAV 120

Query: 121 SLQSVSGLASVTLGSDLSQGNSATERGAREGIPQSINGNADGDASEAAGGNSRDSSYQRY 180
           SLQSVSGLASVTLGS+LSQG SA ERGAREGIP+SIN  ADGD SE AGGNSRDSSYQRY
Sbjct: 121 SLQSVSGLASVTLGSELSQGESANERGAREGIPESINAGADGDTSEVAGGNSRDSSYQRY 180

Query: 181 DIQQAARGIEQILPFSFLLLVVFIRQHLQ--------------------------VARKI 240
           DIQQAARGIEQILPFSFLLLVVFIRQHLQ                            RKI
Sbjct: 181 DIQQAARGIEQILPFSFLLLVVFIRQHLQGFFVTIWIAAFMYKSNDILRKQTALKGERKI 240

Query: 241 WTIMNYCIVF-MQQAYVLFSFINDDLLYPLIMLPPRAIPPFWHAIFIIMVNGNLLLKFSL 300
             ++   + F +    V + + NDDLLYPLIM PPRAIPPFWHAIFIIMVN  L+ +   
Sbjct: 241 SVLVCISLAFTIHVIGVYWWYQNDDLLYPLIMCPPRAIPPFWHAIFIIMVNDTLVRQ--- 300

Query: 301 IITELSLYKTPYKCLSPTASCSPSKQERIGAICFQPPNQNIKPGGWCTALQQRRKVAHSS 360
                                                                       
Sbjct: 301 ------------------------------------------------------------ 360

Query: 361 ISLSNQLLLKLMSQLQPDGFHRCWTLLAVMVIKCVLLMYYKNSRGRNYRKQGQMLTLVEY 420
                                      AVMV+KCVLLMYYKNSRGRNYRKQGQMLTLVEY
Sbjct: 361 ---------------------------AVMVVKCVLLMYYKNSRGRNYRKQGQMLTLVEY 420

Query: 421 LLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRK 480
           LLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRK
Sbjct: 421 LLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRK 425

Query: 481 EVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRC 489
           EVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRC
Sbjct: 481 EVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRC 425

[Close]

BLAST of Clc04G06470 vs. ExPASy TrEMBL
Match: A0A6J1DPQ0 (RING finger and transmembrane domain-containing protein 2 OS=Momordica charantia OX=3673 GN=LOC111023167 PE=4 SV=1)

HSP 1 Score: 589.3 bits (1518), Expect = 1.6e-164
Identity = 348/515 (67.57%), Postives = 364/515 (70.68%), Query Frame = 0


Query: 1   MEGSGSDPDSHRAASTSSSSRRFGMLSASNIIQAPLSALLEYSGLLRGRPSHQESEALIS 60
           ME SGSDPD+HRAASTS SSRRFGML+ASNIIQAPLSALLEYSGLLRGRPSHQESEALIS
Sbjct: 1   MEASGSDPDAHRAASTSGSSRRFGMLAASNIIQAPLSALLEYSGLLRGRPSHQESEALIS 60

Query: 61  ARLPSGFRDHLRSQIEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQAREVSGQNAV 120
           ARLPSGFRDH+RSQIEESSG+TNDGEVSIRIIGAGE EHGRDGAGLVVGQAREV GQNAV
Sbjct: 61  ARLPSGFRDHIRSQIEESSGSTNDGEVSIRIIGAGEQEHGRDGAGLVVGQAREVGGQNAV 120

Query: 121 SLQSVSGLASVTLGSDLSQGNSATERGAREGIPQSINGNADGDASEAAGGNSRDSSYQRY 180
           S QSVSGLA     S+LSQG+ A ERGAREGIPQ ING ADGDA EAAGGN RDSSYQRY
Sbjct: 121 SSQSVSGLA-----SELSQGDPAPERGAREGIPQPINGGADGDALEAAGGNGRDSSYQRY 180

Query: 181 DIQQAARGIEQILPFSFLLLVVFIRQHLQ--------------------------VARKI 240
           DIQQAARGIEQILPFSFLLLVVFIRQHLQ                            RKI
Sbjct: 181 DIQQAARGIEQILPFSFLLLVVFIRQHLQGFFVTIWIAAFMYKSNDILRKQTALKGERKI 240

Query: 241 WTIMNYCIVF-MQQAYVLFSFINDDLLYPLIMLPPRAIPPFWHAIFIIMVNGNLLLKFSL 300
             ++   + F +    V + + NDDLLYPLIMLPPRAIPPFWHAIFIIMVN  L+ +   
Sbjct: 241 SVLVGISLAFTIHVIGVYWWYQNDDLLYPLIMLPPRAIPPFWHAIFIIMVNDTLVRQ--- 300

Query: 301 IITELSLYKTPYKCLSPTASCSPSKQERIGAICFQPPNQNIKPGGWCTALQQRRKVAHSS 360
                                                                       
Sbjct: 301 ------------------------------------------------------------ 360

Query: 361 ISLSNQLLLKLMSQLQPDGFHRCWTLLAVMVIKCVLLMYYKNSRGRNYRKQGQMLTLVEY 420
                                      AVMV+KCVLLMYYKNSRGRNYRKQGQMLTLVEY
Sbjct: 361 ---------------------------AVMVVKCVLLMYYKNSRGRNYRKQGQMLTLVEY 420

Query: 421 LLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRK 480
           LLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAAL+ALSRK
Sbjct: 421 LLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALRALSRK 420

Query: 481 EVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRC 489
           EVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRC
Sbjct: 481 EVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRC 420

[Close]

BLAST of Clc04G06470 vs. ExPASy TrEMBL
Match: A0A6J1GEZ3 (RING finger and transmembrane domain-containing protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111453584 PE=4 SV=1)

HSP 1 Score: 578.6 bits (1490), Expect = 2.9e-161
Identity = 343/515 (66.60%), Postives = 361/515 (70.10%), Query Frame = 0


Query: 1   MEGSGSDPDSHRAASTSSSSRRFGMLSASNIIQAPLSALLEYSGLLRGRPSHQESEALIS 60
           MEGSG DPDSHRAASTS SSRRFG+LSASNIIQAPLSALLEYSGLLRGRPSHQE EALIS
Sbjct: 1   MEGSGIDPDSHRAASTSGSSRRFGLLSASNIIQAPLSALLEYSGLLRGRPSHQEPEALIS 60

Query: 61  ARLPSGFRDHLRSQIEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQAREVSGQNAV 120
           ARLPS FR HLRSQI+ESSGA+NDGEV IRIIG GEPEHGRDGAGLVVGQAREV+G+NAV
Sbjct: 61  ARLPSAFRGHLRSQIDESSGASNDGEVLIRIIGDGEPEHGRDGAGLVVGQAREVNGRNAV 120

Query: 121 SLQSVSGLASVTLGSDLSQGNSATERGAREGIPQSINGNADGDASEAAGGNSRDSSYQRY 180
           S Q      SVTL S+LSQG+SATERGAREGIPQS N  ADGDASEAAGGNSRDSSYQRY
Sbjct: 121 SSQ------SVTLASELSQGDSATERGAREGIPQSRNAGADGDASEAAGGNSRDSSYQRY 180

Query: 181 DIQQAARGIEQILPFSFLLLVVFIRQHLQ--------------------------VARKI 240
           DIQQAARGIEQILPFSFLLLVVFIRQHLQ                            RKI
Sbjct: 181 DIQQAARGIEQILPFSFLLLVVFIRQHLQGFFVTIWIAAFMYKSNDILRKQTALKGERKI 240

Query: 241 WTIMNYCIVF-MQQAYVLFSFINDDLLYPLIMLPPRAIPPFWHAIFIIMVNGNLLLKFSL 300
             ++   +VF +    V + + ND LLYPLIMLPPRAIPPFWHAIFIIMVN  L+ +   
Sbjct: 241 SVLVGISLVFTIHVIGVYWWYQNDGLLYPLIMLPPRAIPPFWHAIFIIMVNDTLVRQ--- 300

Query: 301 IITELSLYKTPYKCLSPTASCSPSKQERIGAICFQPPNQNIKPGGWCTALQQRRKVAHSS 360
                                                                       
Sbjct: 301 ------------------------------------------------------------ 360

Query: 361 ISLSNQLLLKLMSQLQPDGFHRCWTLLAVMVIKCVLLMYYKNSRGRNYRKQGQMLTLVEY 420
                                      AVMV+KC+LLMYYKNSRGRNYRKQGQMLTLVEY
Sbjct: 361 ---------------------------AVMVVKCILLMYYKNSRGRNYRKQGQMLTLVEY 419

Query: 421 LLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRK 480
           LLLLYRALLP PVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRK
Sbjct: 421 LLLLYRALLPAPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRK 419

Query: 481 EVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRC 489
           EVHYGAYATSEQV+AAGDLCAICQEKMHAPILLRC
Sbjct: 481 EVHYGAYATSEQVNAAGDLCAICQEKMHAPILLRC 419

[Close]

BLAST of Clc04G06470 vs. TAIR 10
Match: AT5G01960.1 (RING/U-box superfamily protein )

HSP 1 Score: 344.4 bits (882), Expect = 1.8e-94
Identity = 244/517 (47.20%), Postives = 279/517 (53.97%), Query Frame = 0


Query: 1   MEGSGSDPDSHRAASTSSSSRRFGMLSASNIIQAPLSALLEYSGLLRGRPS-HQESEALI 60
           ME  G+  DS R      S RR  +LSASNIIQAP+S LLEYSGL R RPS   E+E L+
Sbjct: 1   METPGASHDSFR-----GSPRRNSILSASNIIQAPISTLLEYSGLFRARPSPSHEAETLV 60

Query: 61  SARLPSGFRDHLRSQIEESSGATNDGEVSIRIIGAGEPEHGRDGAGLVVGQAREVSGQNA 120
           S               ++SSG +N GEV+IRIIG  E +   D   L      E+ G +A
Sbjct: 61  S---------------DDSSGLSN-GEVAIRIIGNTEQDAETDTNALREPGHSELLGSSA 120

Query: 121 VSLQSVSGLASVTLGSDLSQGNSATERGAREGIPQSINGN-ADGDASEAAGGNSRDSSYQ 180
             +  +                     GA EG  Q+  G+ A GDA+      SRDS YQ
Sbjct: 121 TQVDPMG--------------------GASEGASQAAPGDPAAGDAA------SRDSPYQ 180

Query: 181 RYDIQQAARGIEQILPFSFLLLVVFIRQHLQ---VA-----------------------R 240
           RYDIQQAAR IEQILPFS LLLVVFIRQHLQ   VA                       R
Sbjct: 181 RYDIQQAARWIEQILPFSLLLLVVFIRQHLQGFFVAIWIAAVMFKSNDILKKQTALKGER 240

Query: 241 KIWTIMNYCIVFMQQAY-VLFSFINDDLLYPLIMLPPRAIPPFWHAIFIIMVNGNLLLKF 300
            I  ++   + F      V + F  DDLLYPLIMLPP++IPPFWHAIFII+VN  L+ + 
Sbjct: 241 HISALIGISVAFTAHVVGVYWWFRKDDLLYPLIMLPPKSIPPFWHAIFIIVVNDTLVRQ- 300

Query: 301 SLIITELSLYKTPYKCLSPTASCSPSKQERIGAICFQPPNQNIKPGGWCTALQQRRKVAH 360
                                                                       
Sbjct: 301 ------------------------------------------------------------ 360

Query: 361 SSISLSNQLLLKLMSQLQPDGFHRCWTLLAVMVIKCVLLMYYKNSRGRNYRKQGQMLTLV 420
                                        A M+ KC LLMYYKNSRGRNYRKQGQ+LTLV
Sbjct: 361 -----------------------------ASMIFKCFLLMYYKNSRGRNYRKQGQLLTLV 380

Query: 421 EYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALS 480
           EY +LLYR+LLPTPVWYRFFLNK+YGSLFSSL+TGLYLTFKLTSVVEKVQSFF ALKALS
Sbjct: 421 EYFMLLYRSLLPTPVWYRFFLNKDYGSLFSSLMTGLYLTFKLTSVVEKVQSFFTALKALS 380

Query: 481 RKEVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRC 489
           RKEVHYG+YAT+EQV+AAGDLCAICQEKMH PILLRC
Sbjct: 481 RKEVHYGSYATTEQVNAAGDLCAICQEKMHTPILLRC 380

The following BLAST results are available for this feature:

BLAST of Clc04G06470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881776.1	9.8e-172	70.29	RING finger and transmembrane domain-containing protein 2 [Benincasa hispida]	[more]
XP_004142726.1	3.7e-171	69.71	RING finger and transmembrane domain-containing protein 2 isoform X2 [Cucumis sa...	[more]
XP_031740196.1	3.7e-171	69.71	RING finger and transmembrane domain-containing protein 2 isoform X1 [Cucumis sa...	[more]
XP_008463298.1	1.2e-169	69.13	PREDICTED: RING finger and transmembrane domain-containing protein 2 [Cucumis me...	[more]
TYK06212.1	1.2e-169	69.13	RING finger and transmembrane domain-containing protein 2 [Cucumis melo var. mak...	[more]

BLAST of Clc04G06470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5RAG4	3.8e-09	30.65	RING finger and transmembrane domain-containing protein 2 OS=Pongo abelii OX=960...	[more]
Q96EX2	4.9e-09	26.92	RING finger and transmembrane domain-containing protein 2 OS=Homo sapiens OX=960...	[more]
Q6NTV1	4.2e-08	31.08	E3 ubiquitin-protein ligase RNFT1 OS=Xenopus laevis OX=8355 GN=rnft1 PE=2 SV=2	[more]
Q28GL3	5.5e-08	31.08	E3 ubiquitin-protein ligase RNFT1 OS=Xenopus tropicalis OX=8364 GN=rnft1 PE=2 SV...	[more]
Q3UF64	5.5e-08	29.84	RING finger and transmembrane domain-containing protein 2 OS=Mus musculus OX=100...	[more]

BLAST of Clc04G06470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L088	1.8e-171	69.71	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G337310 P...	[more]
A0A5D3C4Q1	5.8e-170	69.13	RING finger and transmembrane domain-containing protein 2 OS=Cucumis melo var. m...	[more]
A0A1S3CIV8	5.8e-170	69.13	RING finger and transmembrane domain-containing protein 2 OS=Cucumis melo OX=365...	[more]
A0A6J1DPQ0	1.6e-164	67.57	RING finger and transmembrane domain-containing protein 2 OS=Momordica charantia...	[more]
A0A6J1GEZ3	2.9e-161	66.60	RING finger and transmembrane domain-containing protein 2-like OS=Cucurbita mosc...	[more]

BLAST of Clc04G06470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01960.1	1.8e-94	47.20	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..175
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR15860:SF19	RING/U-BOX SUPERFAMILY PROTEIN	coord: 212..276 coord: 361..502
None	No IPR available	PANTHER	PTHR15860:SF19	RING/U-BOX SUPERFAMILY PROTEIN	coord: 1..209
IPR044235	RING finger and transmembrane domain-containing protein 1/2	PANTHER	PTHR15860	UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN	coord: 212..276
IPR044235	RING finger and transmembrane domain-containing protein 1/2	PANTHER	PTHR15860	UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN	coord: 1..209
IPR044235	RING finger and transmembrane domain-containing protein 1/2	PANTHER	PTHR15860	UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN	coord: 361..502

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G06470.2	Clc04G06470.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1904294	positive regulation of ERAD pathway
cellular_component	GO:0016020	membrane
molecular_function	GO:0061630	ubiquitin protein ligase activity