Clc04G04700 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G04700
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Retrotransposon protein
Location	ClcChr04: 16956655 .. 16958984 (-)
RNA-Seq Expression	Clc04G04700
Synteny	Clc04G04700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCGATGGAAGGTGGAAGTGGTTTCAGGTACATAAAAGTACTCAATTTTTTGATATGAATACGTCATACATATGTATGCAACAATAGATTTTTTTAAATTCATTTTGATCACTTGAGAGAAACAGAATTGTCTGGGTGCGTTAGACAGTACATACATTAAAGTGAATGTTAGTGTCGTCGATCGACCTCGATATAGGACAAGAAAGTGAGAAATTGCCACAAACTTTCTTGCGATGTGTGATCAAAATGGGGAGTTCATCTTTGTTTTGCTAGGGTGGGAAGGGTCTGCAGCCGGTTTAAGGGTTCTTAGGGATGCGGTTTCGCGACCATACAGATTGAGAGTTCCAAAGGGTATTATAATAACCGTATACGTTATTTAAACATGCATACATGCCACAACACATGTGCATGACATTTCGAAACTTATACAAGATACTATTACCTATGTGATGCTGGATACCCTAACACTAAAGGATTCTTGGCGCCGTACAGAGGGGAACGATACCATCTCTCCGATTGGCGTGGAGTAGGAAACGCATCGACAACTGTAAGAGAATTTTTCAACATGAAATATTCTTCGACAAGGAATGTGATAACTTGTAGAAATACAAGTTAGTATACTCATTAATTGGAGTAATTAGGACATAATTGATGATAAACGCATGATTTTAGCACTTGAATTGTATTATATGAATAACTCTATGTTTACTACGCTTACAAAAGAATCTATCCTGGAAATTATAAAACTCTACCTTTTTTAACGCAAGATAGAAACAAAAAGGAGCTCAAAATATAAAGGAAGAGGATGCTGCCAGAAAAGACCAATGCGTCGAGAACCATGCATCCAAAAAATAAACAATACAAGTGCTTAACCAGCAACTGTCATGTCAATATGCAAGTGGACAACTGATCTTACCAGATCATGATAAATCTAATGAACTGAAGATGTGAAGAAGTCGGCACAGCAGGGAATGGAATTAAATGCAAAGGTATAAGATCATCATGATATCACCTTTTCGACGCCTATAAATAGCCTATTGCATTTTATCTTCAAGTAGAAAGAAAACACTTAACGAAAGCTCTGCGCAAATTCTCGCTCAACCTCTATAGCCATCCTCCATTGCGAGCTCTTTTGTGAGAAGATTCTGAGAGTGTTCAGAGTCACCTCTTAGAGAGTGAGAATTCACCCTTGTATAAATAATGTATCAGATAGCCACCATCTCAAGCCTCCAAGAAGCAAGACATTGCCATTGACAGACTTCCCTTTTTTTTTTTCCTTCATTATGAACACCTTTCTTATTTATATTTTGTTGATATCTTTCAAGAGATTTGATTATTTACTTAATACAAGTTTGATTGACATTATGCCTCCATTTATTCTCATTTGCAACATCTTACACCATAAATGTTTAATTTTTAATGAGTTAAGCATAAGTTTTAGTATTTCCAAACGTGATTAAGTTGCTTTCATCTTGATTAAATGGGTACTTAAAACTTGCTTGAATCTATCAAAGAAATAGGTCTAAGTGAGTATATTCACCTGCTTGAGAGAGTCAGTGAGTAATTTCAGTATTTAACAAGAAAATAGTAGACTTTAGAGATAAAGTTTTTCTTTTGCTCGAAGAGCTTACCATGCGTCTTAGAAATAAGATTAATGTGGTGTCGAAGCATCGAGAGATACGTTCTTAACTTTGAGTTTGTAAGCATGAAAAATTACTTGTCGCTTAGGAAAATACTATTAATTTAACTTAACTTACCCTTTTTCATGGTTCCATTCATTTTATACCCGCTATCTAATCTTGTTTATACTTGACTAACTTCTTCCAATATTCATTCCGCATCGCCATCCCATATGTTCATCCATTAATTTATTCTTGTATAAAAATAAACACACAATTGTAATTATTATATAGTTCCAAACGCATCAAATCATAGATGAATCTCAATGCATAGTCATTAAAAATTCCTGTATTCGACCCTAGACTCTCCAGGAAAACCTATTTAAACTTATACTTGAGTTTTTATAAGAAAACTTGCATTTAACATATACATCTTTCTTGATTCTTCACGCGACATTAGGCCATTACGATCTTAATGCATCATATGCATATAAATTGCAACAGAACGTTATCGAGCGAGCGTTTGGGTTGCTAAAGGGGCGGTGGGCTTCAGGGGAAAACCATTCTACCCAATACAAGTTCAATGTCGAACAATAACTGCATGTTGCCTTATTCACAACTTGATCATAAGGAAGATGGGAATCGGTGCAATGCTTGACGCGTCCGATGAAGCATTGCACCGATTCAGGGAATTCTGCATCAGTTGA

mRNA sequence

ATGCATCGATGGAAGGTGGAAGTGGTTTCAGGGTGGGAAGGGTCTGCAGCCGGTTTAAGGGTTCTTAGGGATGCGGTTTCGCGACCATACAGATTGAGAGTTCCAAAGGGATTCTTGGCGCCGTACAGAGGGGAACGATACCATCTCTCCGATTGGCGTGGAGTAGGAAACGCATCGACAACTGTAAGAGAATTTTTCAACATGAAATATTCTTCGACAAGGAATGTGATAACTTGTAGAAATACAAAACGTTATCGAGCGAGCGTTTGGGTTGCTAAAGGGGCGGTGGGCTTCAGGGGAAAACCATTCTACCCAATACAAGTTCAATGTCGAACAATAACTGCATGTTGCCTTATTCACAACTTGATCATAAGGAAGATGGGAATCGGTGCAATGCTTGACGCGTCCGATGAAGCATTGCACCGATTCAGGGAATTCTGCATCAGTTGA

Coding sequence (CDS)

ATGCATCGATGGAAGGTGGAAGTGGTTTCAGGGTGGGAAGGGTCTGCAGCCGGTTTAAGGGTTCTTAGGGATGCGGTTTCGCGACCATACAGATTGAGAGTTCCAAAGGGATTCTTGGCGCCGTACAGAGGGGAACGATACCATCTCTCCGATTGGCGTGGAGTAGGAAACGCATCGACAACTGTAAGAGAATTTTTCAACATGAAATATTCTTCGACAAGGAATGTGATAACTTGTAGAAATACAAAACGTTATCGAGCGAGCGTTTGGGTTGCTAAAGGGGCGGTGGGCTTCAGGGGAAAACCATTCTACCCAATACAAGTTCAATGTCGAACAATAACTGCATGTTGCCTTATTCACAACTTGATCATAAGGAAGATGGGAATCGGTGCAATGCTTGACGCGTCCGATGAAGCATTGCACCGATTCAGGGAATTCTGCATCAGTTGA

Protein sequence

MHRWKVEVVSGWEGSAAGLRVLRDAVSRPYRLRVPKGFLAPYRGERYHLSDWRGVGNASTTVREFFNMKYSSTRNVITCRNTKRYRASVWVAKGAVGFRGKPFYPIQVQCRTITACCLIHNLIIRKMGIGAMLDASDEALHRFREFCIS

Homology

[Close]

BLAST of Clc04G04700 vs. NCBI nr
Match: XP_038886674.1 (putative nuclease HARBI1 [Benincasa hispida])

HSP 1 Score: 178.3 bits (451), Expect = 4.8e-41
Identity = 93/133 (69.92%), Postives = 97/133 (72.93%), Query Frame = 0


Query: 6   VEVVSGWEGSAAGLRVLRDAVSRPYRLRVPKGFLAPYRGERYHLSDWRGVGNASTTVREF 65
           V V+ GWEGSA   RVLR+ VSRPY LRVPKGFLA YR ERYHLSDWRGVGNASTT REF
Sbjct: 9   VFVLPGWEGSATDSRVLRNVVSRPYGLRVPKGFLASYREERYHLSDWRGVGNASTTAREF 68

Query: 66  FNMKYSSTRNVITCRNTKRYRASVWVAKGAVGFRGKPFYPIQVQCRTITACCLIHNLIIR 125
           FNMK+SS RNVI      R     W        RGK FYPIQVQCRTIT C LIHNLI R
Sbjct: 69  FNMKHSSARNVI--ERAFRLLNGRWAI-----LRGKSFYPIQVQCRTITECFLIHNLITR 128

Query: 126 KMGIGAMLDASDE 139
           +MGIGAMLD  DE
Sbjct: 129 EMGIGAMLDVPDE 134

[Close]

BLAST of Clc04G04700 vs. NCBI nr
Match: KAA0033290.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 152.1 bits (383), Expect = 3.7e-33
Identity = 80/148 (54.05%), Postives = 95/148 (64.19%), Query Frame = 0


Query: 6   VEVVSGWEGSAAGLRVLRDAVSRPYRLRVPK--------------GFLAPYRGERYHLSD 65
           V V+SGWEGSAA  R+LRDA+SR   L+VPK              GFLAPYRGERYHLS+
Sbjct: 141 VFVLSGWEGSAADSRILRDAISRHNGLKVPKGYYYLCDAGYSNVEGFLAPYRGERYHLSE 200

Query: 66  WRGVGNASTTVREFFNMKYSSTRNVITCRNTKRYRASVWVAKGAVG-FRGKPFYPIQVQC 125
           W G  NA TT REFFNMK+SS RNVI        + + W+ KG     RGK +YP+ VQC
Sbjct: 201 WHGGSNAPTTAREFFNMKHSSARNVI--------KRAFWLLKGCWAILRGKSYYPVDVQC 260

Query: 126 RTITACCLIHNLIIRKMGIGAMLDASDE 139
           RTI  CCL+HNLI R+M    ++D  DE
Sbjct: 261 RTIMVCCLLHNLINREMTNSEIIDDLDE 280

[Close]

BLAST of Clc04G04700 vs. NCBI nr
Match: KAA0062747.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 148.3 bits (373), Expect = 5.3e-32
Identity = 80/148 (54.05%), Postives = 95/148 (64.19%), Query Frame = 0


Query: 6   VEVVSGWEGSAAGLRVLRDAVSRPYRLRVPK--------------GFLAPYRGERYHLSD 65
           V V+ GWEGSAA  R+LRDA+SR   L+VPK              GFLAPYRGERYHLS+
Sbjct: 143 VFVLFGWEGSAADSRILRDAISRHNGLKVPKGYYYLCDAGYPNAEGFLAPYRGERYHLSE 202

Query: 66  WRGVGNASTTVREFFNMKYSSTRNVITCRNTKRYRASVWVAKGAVG-FRGKPFYPIQVQC 125
           WRG  NA TT REFFNMK+SS+RNVI          +  + KG     RGK +YP+ VQC
Sbjct: 203 WRGESNAPTTTREFFNMKHSSSRNVI--------ERAFGLLKGCWAILRGKSYYPVDVQC 262

Query: 126 RTITACCLIHNLIIRKMGIGAMLDASDE 139
           RTI ACCL+HNLI R+M    ++D  DE
Sbjct: 263 RTIMACCLLHNLINREMTNSEIIDDLDE 282

[Close]

BLAST of Clc04G04700 vs. NCBI nr
Match: KAA0035620.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0041646.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047363.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0048378.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 2.6e-31
Identity = 79/148 (53.38%), Postives = 96/148 (64.86%), Query Frame = 0


Query: 6   VEVVSGWEGSAAGLRVLRDAVSRPYRLRVPK--------------GFLAPYRGERYHLSD 65
           V V++GWEGSAA  R+LRDA+SRP RL+VPK              GFLAPYRG+RYHL +
Sbjct: 207 VYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQE 266

Query: 66  WRGVGNASTTVREFFNMKYSSTRNVITCRNTKRYRASVWVAKGAVG-FRGKPFYPIQVQC 125
           WRG  NA +T +EFFNMK+SS RNVI          +  V KG     RGK +YP++VQC
Sbjct: 267 WRGPENAPSTSKEFFNMKHSSARNVI--------ERAFGVLKGRWAILRGKSYYPVEVQC 326

Query: 126 RTITACCLIHNLIIRKMGIGAMLDASDE 139
           RTI ACCL+HNLI R+M    + D  DE
Sbjct: 327 RTILACCLLHNLINREMTNFDIEDNIDE 346

[Close]

BLAST of Clc04G04700 vs. NCBI nr
Match: KAA0046727.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0056032.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0059561.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0065497.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 2.6e-31
Identity = 79/148 (53.38%), Postives = 96/148 (64.86%), Query Frame = 0


Query: 6   VEVVSGWEGSAAGLRVLRDAVSRPYRLRVPK--------------GFLAPYRGERYHLSD 65
           V V++GWEGSAA  R+LRDA+SRP RL+VPK              GFLAPYRG+RYHL +
Sbjct: 207 VYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQE 266

Query: 66  WRGVGNASTTVREFFNMKYSSTRNVITCRNTKRYRASVWVAKGAVG-FRGKPFYPIQVQC 125
           WRG  NA +T +EFFNMK+SS RNVI          +  V KG     RGK +YP++VQC
Sbjct: 267 WRGPENAPSTSKEFFNMKHSSARNVI--------ERAFGVLKGRWAILRGKSYYPVEVQC 326

Query: 126 RTITACCLIHNLIIRKMGIGAMLDASDE 139
           RTI ACCL+HNLI R+M    + D  DE
Sbjct: 327 RTILACCLLHNLINREMTNFDIEDNIDE 346

[Close]

BLAST of Clc04G04700 vs. ExPASy TrEMBL
Match: A0A5A7SQU2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold472G00070 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.8e-33
Identity = 80/148 (54.05%), Postives = 95/148 (64.19%), Query Frame = 0


Query: 6   VEVVSGWEGSAAGLRVLRDAVSRPYRLRVPK--------------GFLAPYRGERYHLSD 65
           V V+SGWEGSAA  R+LRDA+SR   L+VPK              GFLAPYRGERYHLS+
Sbjct: 141 VFVLSGWEGSAADSRILRDAISRHNGLKVPKGYYYLCDAGYSNVEGFLAPYRGERYHLSE 200

Query: 66  WRGVGNASTTVREFFNMKYSSTRNVITCRNTKRYRASVWVAKGAVG-FRGKPFYPIQVQC 125
           W G  NA TT REFFNMK+SS RNVI        + + W+ KG     RGK +YP+ VQC
Sbjct: 201 WHGGSNAPTTAREFFNMKHSSARNVI--------KRAFWLLKGCWAILRGKSYYPVDVQC 260

Query: 126 RTITACCLIHNLIIRKMGIGAMLDASDE 139
           RTI  CCL+HNLI R+M    ++D  DE
Sbjct: 261 RTIMVCCLLHNLINREMTNSEIIDDLDE 280

[Close]

BLAST of Clc04G04700 vs. ExPASy TrEMBL
Match: A0A5D3DG22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00290 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.6e-32
Identity = 80/148 (54.05%), Postives = 95/148 (64.19%), Query Frame = 0


Query: 6   VEVVSGWEGSAAGLRVLRDAVSRPYRLRVPK--------------GFLAPYRGERYHLSD 65
           V V+ GWEGSAA  R+LRDA+SR   L+VPK              GFLAPYRGERYHLS+
Sbjct: 143 VFVLFGWEGSAADSRILRDAISRHNGLKVPKGYYYLCDAGYPNAEGFLAPYRGERYHLSE 202

Query: 66  WRGVGNASTTVREFFNMKYSSTRNVITCRNTKRYRASVWVAKGAVG-FRGKPFYPIQVQC 125
           WRG  NA TT REFFNMK+SS+RNVI          +  + KG     RGK +YP+ VQC
Sbjct: 203 WRGESNAPTTTREFFNMKHSSSRNVI--------ERAFGLLKGCWAILRGKSYYPVDVQC 262

Query: 126 RTITACCLIHNLIIRKMGIGAMLDASDE 139
           RTI ACCL+HNLI R+M    ++D  DE
Sbjct: 263 RTIMACCLLHNLINREMTNSEIIDDLDE 282

[Close]

BLAST of Clc04G04700 vs. ExPASy TrEMBL
Match: A0A5A7TXW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00370 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.3e-31
Identity = 79/148 (53.38%), Postives = 96/148 (64.86%), Query Frame = 0


Query: 6   VEVVSGWEGSAAGLRVLRDAVSRPYRLRVPK--------------GFLAPYRGERYHLSD 65
           V V++GWEGSAA  R+LRDA+SRP RL+VPK              GFLAPYRG+RYHL +
Sbjct: 207 VYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQE 266

Query: 66  WRGVGNASTTVREFFNMKYSSTRNVITCRNTKRYRASVWVAKGAVG-FRGKPFYPIQVQC 125
           WRG  NA +T +EFFNMK+SS RNVI          +  V KG     RGK +YP++VQC
Sbjct: 267 WRGPENAPSTSKEFFNMKHSSARNVI--------ERAFGVLKGRWAILRGKSYYPVEVQC 326

Query: 126 RTITACCLIHNLIIRKMGIGAMLDASDE 139
           RTI ACCL+HNLI R+M    + D  DE
Sbjct: 327 RTILACCLLHNLINREMTNFDIEDNIDE 346

[Close]

BLAST of Clc04G04700 vs. ExPASy TrEMBL
Match: A0A5D3BDX0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00360 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.3e-31
Identity = 79/148 (53.38%), Postives = 96/148 (64.86%), Query Frame = 0


Query: 6   VEVVSGWEGSAAGLRVLRDAVSRPYRLRVPK--------------GFLAPYRGERYHLSD 65
           V V++GWEGSAA  R+LRDA+SRP RL+VPK              GFLAPYRG+RYHL +
Sbjct: 207 VYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQE 266

Query: 66  WRGVGNASTTVREFFNMKYSSTRNVITCRNTKRYRASVWVAKGAVG-FRGKPFYPIQVQC 125
           WRG  NA +T +EFFNMK+SS RNVI          +  V KG     RGK +YP++VQC
Sbjct: 267 WRGPENAPSTSKEFFNMKHSSARNVI--------ERAFGVLKGRWAILRGKSYYPVEVQC 326

Query: 126 RTITACCLIHNLIIRKMGIGAMLDASDE 139
           RTI ACCL+HNLI R+M    + D  DE
Sbjct: 327 RTILACCLLHNLINREMTNFDIEDNIDE 346

[Close]

BLAST of Clc04G04700 vs. ExPASy TrEMBL
Match: A0A5A7SNV3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00570 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 2.2e-31
Identity = 79/148 (53.38%), Postives = 95/148 (64.19%), Query Frame = 0


Query: 6   VEVVSGWEGSAAGLRVLRDAVSRPYRLRVPK--------------GFLAPYRGERYHLSD 65
           V V++GWEGSAA  R+LRDA+SRP RL+VPK              GFLAPYRG+RYHL  
Sbjct: 207 VYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQK 266

Query: 66  WRGVGNASTTVREFFNMKYSSTRNVITCRNTKRYRASVWVAKGAVG-FRGKPFYPIQVQC 125
           WRG  NA +T +EFFNMK+SS RNVI          +  V KG     RGK +YP++VQC
Sbjct: 267 WRGPENAPSTSKEFFNMKHSSARNVI--------ETAFGVLKGRWAILRGKSYYPVEVQC 326

Query: 126 RTITACCLIHNLIIRKMGIGAMLDASDE 139
           RTI ACCL+HNLI R+M    + D  DE
Sbjct: 327 RTILACCLLHNLINREMTNFDIEDNIDE 346

[Close]

BLAST of Clc04G04700 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 68.2 bits (165), Expect = 6.5e-12
Identity = 41/122 (33.61%), Postives = 63/122 (51.64%), Query Frame = 0


Query: 6   VEVVSGWEGSAAGLRVLRDAVSRPYRLRV----PKGFLAPYRGERYHLSDWRGVGNASTT 65
           + V+SGWEGSA   RVL DA+ + Y +         FLAP+RG RYHL ++ G      T
Sbjct: 26  IYVLSGWEGSAHDSRVLSDALRKFYLVDCGFANRLNFLAPFRGVRYHLQEFAGQRRDPET 85

Query: 66  VREFFNMKYSSTRNVITCRNTKRYRASVWVAKGAVGFRGKPFYPIQVQCRTITACCLIHN 124
             E FN+++ S RNVI           ++ ++ A+ F+  P +  + Q   +  C  +HN
Sbjct: 86  PHELFNLRHVSLRNVI------ERIFGIFKSRFAI-FKSAPPFSYKKQAGLVLTCAALHN 140

[Close]

BLAST of Clc04G04700 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 50.8 bits (120), Expect = 1.1e-06
Identity = 35/130 (26.92%), Postives = 57/130 (43.85%), Query Frame = 0


Query: 8   VVSGWEGSAAGLRVLRDAVSRPYRLRVPK--------------GFLAPYRGERYHLSDWR 67
           V++GWEGSA+  +VL  A++R  +L+VP+              GF+APY G         
Sbjct: 188 VLAGWEGSASDQQVLNAALTRRNKLQVPQGKYYIVDNKYPNLPGFIAPYHGVS------- 247

Query: 68  GVGNASTTVREFFNMKYSSTRNVITCRNTKRYRASVWVAKGAVGFRGKPFYPIQVQCRTI 124
              N+    +E FN ++      I       +R    + +        P YP+Q Q + +
Sbjct: 248 --TNSREEAKEMFNERHKLLHRAI-------HRTFGALKERFPILLSAPPYPLQTQVKLV 301

The following BLAST results are available for this feature:

BLAST of Clc04G04700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886674.1	4.8e-41	69.92	putative nuclease HARBI1 [Benincasa hispida]	[more]
KAA0033290.1	3.7e-33	54.05	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nucleas...	[more]
KAA0062747.1	5.3e-32	54.05	retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon p...	[more]
KAA0035620.1	2.6e-31	53.38	retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon...	[more]
KAA0046727.1	2.6e-31	53.38	retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon...	[more]

BLAST of Clc04G04700 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc04G04700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SQU2	1.8e-33	54.05	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5D3DG22	2.6e-32	54.05	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TXW1	1.3e-31	53.38	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BDX0	1.3e-31	53.38	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SNV3	2.2e-31	53.38	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Clc04G04700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35695.1	6.5e-12	33.61	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G41980.1	1.1e-06	26.92	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G04700.1	Clc04G04700.1	mRNA