Clc04G04160 (gene) Watermelon (cordophanus) v2

Overview
NameClc04G04160
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionGag/pol protein
LocationClcChr04: 14482051 .. 14486591 (-)
RNA-Seq ExpressionClc04G04160
SyntenyClc04G04160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGATTTGGGTGAGGCACAGTTTGTTCTAGGGATCCAGATCATAAGGAATCGTAAGAACAAAACGTTAGCTTTGTCTCAGACATCTAATATTGACAAGATGCTTGTCAGGTATTTGATGCATAATTTCAAGATAGGCTTATTGCCTTTTCAACATGGAATTATATTGTCTAAGGAACAATGTCCTAAGACTCCTTAAGAGGTTGACGAAATGAGATGGATTCCCTGTGCATTGGTTGTTGGTAGCCTTATGTATGTCATGTTGTGTACAAGGCTTGACATTTGTTATGCAGTTGGGATTGTTAGTAGATATCAATCTGATCCAGGATTTGATCATTGGGCTGGAGTAAAACCATCCTCAAGTATCTTTAGAGAATGAGAAACTACACGCTCGTGTATGGAGCTAAAGATTTGATCCTTACAAAATACAAAGACTCTAATTTTTAGACTGATAAGGATTCTAGGAAATCCATATCGACATCAGTGTTTACTCTTAACGGAGGGGTTGTAGTTTGGCGAAGTACAAAGCAAGTTTGCAGTGCCGACTCTACCATGTAGGCAGAGTATATAGCTGGTTGTGAAGCTACTAAAGAGGATGTCTGACTTAGGAAGTTTTTGACAGACCTAGAAGTAGTTCCAAATATGTCAATGACCATTACATTTTATTGTGATAATAGTGTAGTGGCAAATTCCAAGGAGTCTAGAAGCTACAGATGTGGAGAGTATAGAGAGCGCAAGTATCATTTGATAGAGGAGATTGTGCAACGAGGAAATATGATTGTCATGCAGATTGCTTCAGAGCACAATGTTGTGATCTATTTACAAAGGCTCTCATAGCTAAAGTGTTTGAGGGTCACCTAGAGAGTCTGGGTCTACGAGACATGCAACATCTAGTCTACGGGAAGTGGGAGATGGGTATGGAGTTATGCTCTAGTTTATATGTATTATACACCCACTAGCTTTAGTACAAGTGAGAGATTGTTGGGACTGGTGTGTCCTAAATCTCTCGAGTCTTGTAATTCTGTAAATTGTAAATACATTTTATTTATTGAATAAAATAAGACGTTATTTTATCTATTTTATGCATTAACTCAATCCAATAAACTAAGATTTCATGGTTATTTTATGTAAACTTAAACATGCATGTGGTTGACATACAAGGTTGGATCATGTTTAAGTAATAACCAAAAAGGTTTGTAGTATAGGAATAAGGTTGAGTGTCTTATCTGGTAACACTACGGATACGACCCACTTTGTAATTTCTACAAGGAGTTGTAAAGTGTTACAAATGATTTGATCCTAATTGTTCATGTGGAGACATGTGAGTGTATTCTATGCAAAGAATTTGTATAAGACTAGACCCCGAAATGTTTAATTTTTCTTTGTAACGCTGTTAATTGTAGAAACTAACATTTCATAGGATGACTATAGATAACTCGACCTAAATCCTGAATGAGTTATGAACTCCCGTCTATGAGGGCAATCCTTTAATCTGTATGGGTGAGGGTGGCCAAATCGCCGACTCAATAAGCCTATCATTTTGGGGATTTGTCTAATTAGGGAGCTGGGAACATATCTTCACAAGATAGAATTCACTCCTTCCCATGTTTAGGGTAAGTAGATAAATTACTCCCTTAAGGACAGAGTTCAAGTCTTGAACAATGAGGCCTCACCCTCTCACTGGCCCGAGAAGGGTTCATTTATAGTTGGACTATAAACAACTTGTTCATTAAAGAGATCAATGGTACTTAAGGAGATAGATATAACTATAGGGGTAAAAAGGTAATTTGACCCAACTATAGTTATGAGTAATTTTTGAATGGTCGACGTATTGTTGATTAGTAAATTCCATGGACACAAAAATATATCTATAGTGCGAAGAAGGCAACTGTAAGTACAATGGTACTTAAGGAGATAGATATAACTATAGGGGTAAAACGATAATTTGACCCAACTATAGTTATGAGTAATTTTTGAATGGTCGACGTATTGTTGATTAGTAAATTCCATGGACACAAAAATATATCTATAGTGCGAAGAGGGCAACTGTAAGTCTTTAGTGGAGTGACCTACAGTTAATGATTATTAATTAATCTAATTAAAGAGTTTAATTGATTAATCTCATATCATTGGAGCTTCTAACTATAGGTCCATAAGATCCGCTTACTAGCTCATAAATGATTAGTATTAGAATCAAACATTTTTGTTTAATTTGACATGTTCAAATTAATAAGGGATCTAATTGTATTTGATACAATTAGCCTAATGTATATAGAACATTATAATATAAAATTTACTTTTAATGAGATTAAAAATTTATACTTTATACTATAAGAGAGATAAATATTTAAATGAGATTTAAATATTAATTATATGAATGAGGTTCATATAAAAACTATAGGTTAAAATTAATATGAATGAGATTCATATTAAAACTATAGGTTATGTGAGAGAAGGTTGTTTGAATATTATTCAAATCAAATTAAATATGTGATATTTAATTTATGATTAATTAATTGTTATTAATTAATTTTATTTAATTATATATATTAAATATGATTTAATTATAGTGCAGAGTTATTCTGTTTTCTCTCGAAATTTTATGTAAAAAAGGAGATGGGGAGAGGGAGAAGTTACCTTACAGAATGATTCTGTAAACTCCCAAGAATTCTTTTCCTCTCCAACTCTCTTAATTCTCACAAATCAACTATCTTGCCAAATACATAGAGAACCCACAAATCCTCTTTTTTATTATATTTAGAGAATAGTGAGGTTCTGTTGTGGTGGTGTTCCCAAGAGAAGAAAAGTTTTTCTTGTAAATTCGTTGGAGAATTTTTAGTTCGTGACTTGGAGAAGAAGATTCCCACATTGAAGACGGTCTTCAAAGGGTAGGAAAACTTCTTCCTCTTAATTCTTGTAAAAAGCATGTTAATTTAGTTGTTTATCCTGTATTTTTGTTCTCTATAATTTTTGTTTTCCAAAAGCAAATTTAATAGCAAAAGGCAATCATTCGCTTTCGCTAGGAATTTGATTCATTCACCAACAAACCCTTTTCTGCATGAACTCTTTCTTCTTTTTCCAATTGCTAGCTACAAGTATGGAATCCTCTTGTGTAGTACACCCTTTCACTATTCAATCTTCTTTCCTCAGACAAAAGTTTACTAGAAACCTCAGCAAAATGTAAAGTTTCCTTCCCATACATCAAGATTGAGTTCATGTGTTCATAAGAAGGAGGAAGTGACCAGATGAGTTGGAGTGCCTTATCTTCATCTTCTATCTTCACTCCTATCACCTCCAGCTCAGAAATAATGCCATTGAAAATACCCAGATGCTTTGAGATTTTTGTACCGTCCAACCATTCGTAATGTGTGCAATTGCTCCTTCAGGTACCATCGATTTGAGATGCTCTTTTCCTAATACATTGCTTCAAGCTTCTCCCAAAGCTCTTTGACTGTCCAAATTTCATGCATATTTGCAAGAACATTTTTAGTCAAATTTAGCCTGATTGCATGTGACATCCCAAATTTTCAGGTAATTTAAAAAAAAAAATTTATCTTGAATTATTTGGTTAATTGTTTGAATTTTGATGCTAATTGGATTATGTTGAGAAAATAATTCAATTTAAAGTAATCGTGATAAAAGATTTGGATTTAACTCAATTAGTGGAGAATTGAATTTATTTGTGAGAGATTTAAAAGTTGGATTTAACTTGAAGATTTGGAGTTGGGTGAGATTTTAAATGAGAATACATTGGAATTAAACTCAAGTTGAGGAATTGATTTGTTAGGAGATATTTTGGTTATTAAGTGGTGGTTGGGAAAGATTTGATTTGATGGGTTGAGGAAAATTATATTAAATAAATTGTGTTTTGTTTTGTTTTGGGAAAAGAAAAAGGAAGAGGGAAATTTAAATATATATCTATTTAGAATTTTGAAAAGAGGAAAGGAAAAGAGTGTTGGGTTTTATGTCCTAAAACTCATAGTTTATAAATACCAAATATACTTTTATCATTCAATAAAGTTATTGAAATTTATAATCAATAAGTAGTTATTGATCTATAAAATGTTCTTACTAAATCTAAATTCAATCATCAAAGGATCCTAGACTGTTGCATGAGACTCAAACTTTATGTAGAGACATAAAACTGGAACAAGTTTAAGTTAACAGTCTAAATGGTCTATAGTATATGAATAAGGTTGGGCGCCTTATTCTGAGGACACTATGGATGCAGCCCACTTTGTAACTAGTACAAACGAAGTGATCCTAATTCGTTCATGTGAAGACATGCGAGTGGGGGCGTCCTATGCAAAGAGTTTGAATAAGACAGGACCATGAAATAGTCACTTTTACTTTATAACACCGTTTACTGTCTAAAACTGACTATCTCGACTTTAATGGCCTAGGCAACTTGATCTTAATCTTGAGTTGACTATGAACTTCTGTTTACTCGGGATTATCCTTAGATCTGCATTGGTAAGAGCAGCTCAACAGCTCTGGCTCAATATGCCTTCCATTTCAGGGGTAAAACCAGGTAGATAG

mRNA sequence

ATGAAAGATTTGGGTGAGGCACAGTTTGTTCTAGGGATCCAGATCATAAGGAATCGTAAGAACAAAACGTTAGCTTTGTCTCAGACATCTAATATTGACAAGATGCTTGTCAGCCTTATGTATGTCATGTTGTGTACAAGGCTTGACATTTGTTATGCAGTTGGGATTGTTAGTAGATATCAATCTGATCCAGGATTTGATCATTGGGCTGGAGTAAAACCATCCTCAAATTGCTTCAGAGCACAATGTTGTGATCTATTTACAAAGGCTCTCATAGCTAAAGTGTTTGAGGGTCACCTAGAGAGTCTGGGTCTACGAGACATGCAACATCTAGTCTACGGGAAGTGGGAGATGGATGCTTTGAGATTTTTGTACCGTCCAACCATTCGTAATGTGTGCAATTGCTCCTTCAGGCAACTTGATCTTAATCTTGAGTTGACTATGAACTTCTGTTTACTCGGGATTATCCTTAGATCTGCATTGGTAAGAGCAGCTCAACAGCTCTGGCTCAATATGCCTTCCATTTCAGGGGTAAAACCAGGTAGATAG

Coding sequence (CDS)

ATGAAAGATTTGGGTGAGGCACAGTTTGTTCTAGGGATCCAGATCATAAGGAATCGTAAGAACAAAACGTTAGCTTTGTCTCAGACATCTAATATTGACAAGATGCTTGTCAGCCTTATGTATGTCATGTTGTGTACAAGGCTTGACATTTGTTATGCAGTTGGGATTGTTAGTAGATATCAATCTGATCCAGGATTTGATCATTGGGCTGGAGTAAAACCATCCTCAAATTGCTTCAGAGCACAATGTTGTGATCTATTTACAAAGGCTCTCATAGCTAAAGTGTTTGAGGGTCACCTAGAGAGTCTGGGTCTACGAGACATGCAACATCTAGTCTACGGGAAGTGGGAGATGGATGCTTTGAGATTTTTGTACCGTCCAACCATTCGTAATGTGTGCAATTGCTCCTTCAGGCAACTTGATCTTAATCTTGAGTTGACTATGAACTTCTGTTTACTCGGGATTATCCTTAGATCTGCATTGGTAAGAGCAGCTCAACAGCTCTGGCTCAATATGCCTTCCATTTCAGGGGTAAAACCAGGTAGATAG

Protein sequence

MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLVSLMYVMLCTRLDICYAVGIVSRYQSDPGFDHWAGVKPSSNCFRAQCCDLFTKALIAKVFEGHLESLGLRDMQHLVYGKWEMDALRFLYRPTIRNVCNCSFRQLDLNLELTMNFCLLGIILRSALVRAAQQLWLNMPSISGVKPGR
Homology
[Close]
BLAST of Clc04G04160 vs. NCBI nr
Match: KAA0062410.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK26571.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 1.8e-21
Identity = 60/85 (70.59%), Postives = 64/85 (75.29%), Query Frame = 0 

Query: 1   MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV------------SLMYVMLCTRL 60
           MKDLGE Q+VLGIQIIR+RKNK LALSQ + IDKMLV            SLMY MLCTR 
Sbjct: 563 MKDLGETQYVLGIQIIRDRKNKMLALSQATYIDKMLVRYSMQNSKKAVGSLMYAMLCTRP 622

Query: 61  DICYAVGIVSRYQSDPGFDHWAGVK 74
           DICYAVGIVSRYQS+PG DHW  VK
Sbjct: 623 DICYAVGIVSRYQSNPGLDHWTTVK 647

[Close]
BLAST of Clc04G04160 vs. NCBI nr
Match: KAA0042496.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 3.7e-19
Identity = 62/118 (52.54%), Postives = 67/118 (56.78%), Query Frame = 0 

Query: 1   MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV----------------------- 60
           MKDLGEAQ+VLGIQIIR+RKNKTLALSQ + IDK+LV                       
Sbjct: 1   MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 60

Query: 61  ----------------------SLMYVMLCTRLDICYAVGIVSRYQSDPGFDHWAGVK 74
                                 SLMYVMLCTR DICYAVGIVSRYQS+PG DHW  VK
Sbjct: 61  QSPKTPQEVEDMRRIPYASAVGSLMYVMLCTRPDICYAVGIVSRYQSNPGLDHWTAVK 118

[Close]
BLAST of Clc04G04160 vs. NCBI nr
Match: KAA0042898.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK05300.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 6.3e-19
Identity = 55/84 (65.48%), Postives = 63/84 (75.00%), Query Frame = 0 

Query: 1   MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV-----------SLMYVMLCTRLD 60
           MKDL  AQ+VLG+QI++NR+NKTLA+SQTS IDKML            SLMY MLCTR  
Sbjct: 196 MKDLENAQYVLGVQIVQNRENKTLAMSQTSYIDKMLSRYKMQNSKKVGSLMYAMLCTRPY 255

Query: 61  ICYAVGIVSRYQSDPGFDHWAGVK 74
           ICY+VGIVSRYQS+PG DHW  VK
Sbjct: 256 ICYSVGIVSRYQSNPGRDHWTTVK 279

[Close]
BLAST of Clc04G04160 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-18
Identity = 61/118 (51.69%), Postives = 66/118 (55.93%), Query Frame = 0 

Query: 1    MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV----------------------- 60
            MKDLGEAQ+VLGIQIIR+RKNKTLALSQ + IDK+LV                       
Sbjct: 936  MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 995

Query: 61   ----------------------SLMYVMLCTRLDICYAVGIVSRYQSDPGFDHWAGVK 74
                                  SLMY MLCTR DICYAVGIVSRYQS+PG DHW  VK
Sbjct: 996  QSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVK 1053

[Close]
BLAST of Clc04G04160 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-18
Identity = 61/118 (51.69%), Postives = 66/118 (55.93%), Query Frame = 0 

Query: 1   MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV----------------------- 60
           MKDLGEAQ+VLGIQIIR+RKNKTLALSQ + IDK+LV                       
Sbjct: 810 MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 869

Query: 61  ----------------------SLMYVMLCTRLDICYAVGIVSRYQSDPGFDHWAGVK 74
                                 SLMY MLCTR DICYAVGIVSRYQS+PG DHW  VK
Sbjct: 870 QSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVK 927

[Close]
BLAST of Clc04G04160 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.8e-09
Identity = 40/118 (33.90%), Postives = 55/118 (46.61%), Query Frame = 0 

Query: 1    MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV----------------------- 60
            MKDLG AQ +LG++I+R R ++ L LSQ   I+++L                        
Sbjct: 1035 MKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKK 1094

Query: 61   ----------------------SLMYVMLCTRLDICYAVGIVSRYQSDPGFDHWAGVK 74
                                  SLMY M+CTR DI +AVG+VSR+  +PG +HW  VK
Sbjct: 1095 MCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVK 1152

[Close]
BLAST of Clc04G04160 vs. ExPASy TrEMBL
Match: A0A5D3DS50 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001740 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 8.6e-22
Identity = 60/85 (70.59%), Postives = 64/85 (75.29%), Query Frame = 0 

Query: 1   MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV------------SLMYVMLCTRL 60
           MKDLGE Q+VLGIQIIR+RKNK LALSQ + IDKMLV            SLMY MLCTR 
Sbjct: 563 MKDLGETQYVLGIQIIRDRKNKMLALSQATYIDKMLVRYSMQNSKKAVGSLMYAMLCTRP 622

Query: 61  DICYAVGIVSRYQSDPGFDHWAGVK 74
           DICYAVGIVSRYQS+PG DHW  VK
Sbjct: 623 DICYAVGIVSRYQSNPGLDHWTTVK 647

[Close]
BLAST of Clc04G04160 vs. ExPASy TrEMBL
Match: A0A5A7TKM4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00470 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.8e-19
Identity = 62/118 (52.54%), Postives = 67/118 (56.78%), Query Frame = 0 

Query: 1   MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV----------------------- 60
           MKDLGEAQ+VLGIQIIR+RKNKTLALSQ + IDK+LV                       
Sbjct: 1   MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 60

Query: 61  ----------------------SLMYVMLCTRLDICYAVGIVSRYQSDPGFDHWAGVK 74
                                 SLMYVMLCTR DICYAVGIVSRYQS+PG DHW  VK
Sbjct: 61  QSPKTPQEVEDMRRIPYASAVGSLMYVMLCTRPDICYAVGIVSRYQSNPGLDHWTAVK 118

[Close]
BLAST of Clc04G04160 vs. ExPASy TrEMBL
Match: A0A5D3C1R6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001200 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 3.1e-19
Identity = 55/84 (65.48%), Postives = 63/84 (75.00%), Query Frame = 0 

Query: 1   MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV-----------SLMYVMLCTRLD 60
           MKDL  AQ+VLG+QI++NR+NKTLA+SQTS IDKML            SLMY MLCTR  
Sbjct: 196 MKDLENAQYVLGVQIVQNRENKTLAMSQTSYIDKMLSRYKMQNSKKVGSLMYAMLCTRPY 255

Query: 61  ICYAVGIVSRYQSDPGFDHWAGVK 74
           ICY+VGIVSRYQS+PG DHW  VK
Sbjct: 256 ICYSVGIVSRYQSNPGRDHWTTVK 279

[Close]
BLAST of Clc04G04160 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 5.2e-19
Identity = 61/118 (51.69%), Postives = 66/118 (55.93%), Query Frame = 0 

Query: 1    MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV----------------------- 60
            MKDLGEAQ+VLGIQIIR+RKNKTLALSQ + IDK+LV                       
Sbjct: 936  MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 995

Query: 61   ----------------------SLMYVMLCTRLDICYAVGIVSRYQSDPGFDHWAGVK 74
                                  SLMY MLCTR DICYAVGIVSRYQS+PG DHW  VK
Sbjct: 996  QSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVK 1053

[Close]
BLAST of Clc04G04160 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 5.2e-19
Identity = 61/118 (51.69%), Postives = 66/118 (55.93%), Query Frame = 0 

Query: 1   MKDLGEAQFVLGIQIIRNRKNKTLALSQTSNIDKMLV----------------------- 60
           MKDLGEAQ+VLGIQIIR+RKNKTLALSQ + IDK+LV                       
Sbjct: 810 MKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKE 869

Query: 61  ----------------------SLMYVMLCTRLDICYAVGIVSRYQSDPGFDHWAGVK 74
                                 SLMY MLCTR DICYAVGIVSRYQS+PG DHW  VK
Sbjct: 870 QSPKTPQEVEDMRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVK 927

The following BLAST results are available for this feature:
BLAST of Clc04G04160 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062410.11.8e-2170.59gag/pol protein [Cucumis melo var. makuwa] >TYK26571.1 gag/pol protein [Cucumis ... [more]
KAA0042496.13.7e-1952.54gag/pol protein [Cucumis melo var. makuwa][more]
KAA0042898.16.3e-1965.48gag/pol protein [Cucumis melo var. makuwa] >TYK05300.1 gag/pol protein [Cucumis ... [more]
KAA0025945.11.1e-1851.69gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi... [more]
KAA0059226.11.1e-1851.69gag/pol protein [Cucumis melo var. makuwa][more]
BLAST of Clc04G04160 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P109782.8e-0933.90Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
BLAST of Clc04G04160 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DS508.6e-2270.59Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G0017... [more]
A0A5A7TKM41.8e-1952.54Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G0047... [more]
A0A5D3C1R63.1e-1965.48Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G0012... [more]
A0A5A7TZD05.2e-1951.69Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000... [more]
A0A5A7UYE85.2e-1951.69Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015... [more]
BLAST of Clc04G04160 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc04G04160.1Clc04G04160.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
molecular_function GO:0005488 binding