Clc04G00720 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G00720
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr04: 2202332 .. 2202798 (-)
RNA-Seq Expression	Clc04G00720
Synteny	Clc04G00720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCCGCCGGAGGCCGGAAACTTGACATCTCATCAACAAATTAGAGGATAAAATCAATGCCTGAGAAGGTGAAGAAGAGAAAGGAGAAGAGAGGAGCCAACGACGGCGCCGGAGATTGGCAGAGAGAAGCCAGATCCGGCCTCACGCCCAGGAGCAGGGGCCGGGGCGAAGTCATCGGCGACTCCAGAAACCAAGCTGCCGGTGGAGCAGACGGCAAGGATGAAGGCGGCAACCAAGAAGGCTTTGGAAGTGAAAAGCTTTGCCATTGGAAGAGAATTGGTTGGAAAGTGAAGAGGAAGAAGGCTGAGAGAGATTGAGAGAGATTGATCGGAGATTTGAGAGTGGCGGAGAGAGAGGCTGAGAGTGGGGATTATATAGGAGAGGGAGCGGCGCGTGGAGCCCACAGAAAAGGGGTGACAGCGAGTCAAAAAGTTGAAACGGCTACGAAACAGCTCAATCTGGTTTTCA

mRNA sequence

GGCCGCCGGAGGCCGGAAACTTGACATCTCATCAACAAATTAGAGGATAAAATCAATGCCTGAGAAGGTGAAGAAGAGAAAGGAGAAGAGAGGAGCCAACGACGGCGCCGGAGATTGGCAGAGAGAAGCCAGATCCGGCCTCACGCCCAGGAGCAGGGGCCGGGGCGAAGTCATCGGCGACTCCAGAAACCAAGCTGCCGGTGGAGCAGACGGCAAGGATGAAGGCGGCAACCAAGAAGGCTTTGGAAGTGAAAAGCTTTGCCATTGGAAGAGAATTGGTTGGAAAGTGAAGAGGAAGAAGGCTGAGAGAGATTGAGAGAGATTGATCGGAGATTTGAGAGTGGCGGAGAGAGAGGCTGAGAGTGGGGATTATATAGGAGAGGGAGCGGCGCGTGGAGCCCACAGAAAAGGGGTGACAGCGAGTCAAAAAGTTGAAACGGCTACGAAACAGCTCAATCTGGTTTTCA

Coding sequence (CDS)

ATGCCTGAGAAGGTGAAGAAGAGAAAGGAGAAGAGAGGAGCCAACGACGGCGCCGGAGATTGGCAGAGAGAAGCCAGATCCGGCCTCACGCCCAGGAGCAGGGGCCGGGGCGAAGTCATCGGCGACTCCAGAAACCAAGCTGCCGGTGGAGCAGACGGCAAGGATGAAGGCGGCAACCAAGAAGGCTTTGGAAGTGAAAAGCTTTGCCATTGGAAGAGAATTGGTTGGAAAGTGAAGAGGAAGAAGGCTGAGAGAGATTGA

Protein sequence

MPEKVKKRKEKRGANDGAGDWQREARSGLTPRSRGRGEVIGDSRNQAAGGADGKDEGGNQEGFGSEKLCHWKRIGWKVKRKKAERD

Homology

[Close]

BLAST of Clc04G00720 vs. NCBI nr
Match: KGN54879.1 (hypothetical protein Csa_012934 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 2.1e-12
Identity = 53/88 (60.23%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 1  MPEKVKKRKEKRGANDGAGDWQREARSGLTPRSRGRGEVIGDSRNQAAGGADGKDEGGNQ 60
          M EKV KR+EKR  NDG  DWQR ARS +  RSR R    G   +Q  G A+GKD+GGNQ
Sbjct: 1  MCEKVNKREEKRRGNDGGWDWQRTARSSVRRRSRSRSRSRG---SQGGGEAEGKDKGGNQ 60

Query: 61 EGFGSEKLCHWKRIG--WKVKRKKAERD 87
          EG G EKL H KRIG  WK KR K ERD
Sbjct: 61 EGIGDEKLGHLKRIGLIWKEKR-KVERD 84

[Close]

BLAST of Clc04G00720 vs. NCBI nr
Match: KAG6595644.1 (hypothetical protein SDJN03_12197, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.0 bits (193), Expect = 2.3e-11
Identity = 44/70 (62.86%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 1  MPEKVKKRKEKRGANDGAGDWQREARSGLTPRSRGRGEVIGDSRNQAAGGADGKDEGGNQ 60
          MPEKVKKR+EKR  NDGA D +RE RSGLT RSR R EV  + RNQAAGG D +D+ G++
Sbjct: 7  MPEKVKKREEKRETNDGARDGKREPRSGLTRRSRRRSEVFSEPRNQAAGGEDREDQNGDE 66

Query: 61 EGFGSEKLCH 71
          EG G E   H
Sbjct: 67 EGVGDENSGH 76

[Close]

BLAST of Clc04G00720 vs. ExPASy TrEMBL
Match: A0A0A0L1E6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G571750 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.0e-12
Identity = 53/88 (60.23%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 1  MPEKVKKRKEKRGANDGAGDWQREARSGLTPRSRGRGEVIGDSRNQAAGGADGKDEGGNQ 60
          M EKV KR+EKR  NDG  DWQR ARS +  RSR R    G   +Q  G A+GKD+GGNQ
Sbjct: 1  MCEKVNKREEKRRGNDGGWDWQRTARSSVRRRSRSRSRSRG---SQGGGEAEGKDKGGNQ 60

Query: 61 EGFGSEKLCHWKRIG--WKVKRKKAERD 87
          EG G EKL H KRIG  WK KR K ERD
Sbjct: 61 EGIGDEKLGHLKRIGLIWKEKR-KVERD 84

The following BLAST results are available for this feature:

BLAST of Clc04G00720 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54879.1	2.1e-12	60.23	hypothetical protein Csa_012934 [Cucumis sativus]	[more]
KAG6595644.1	2.3e-11	62.86	hypothetical protein SDJN03_12197, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Clc04G00720 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc04G00720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1E6	1.0e-12	60.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G571750 PE=4 SV=1	[more]

BLAST of Clc04G00720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G00720.1	Clc04G00720.1	mRNA