Clc04G00540 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc04G00540
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	NADH:ubiquinone oxidoreductase, ESSS subunit
Location	ClcChr04: 1736600 .. 1737491 (-)
RNA-Seq Expression	Clc04G00540
Synteny	Clc04G00540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAATTCCCATACGTAAATCGAGCTTCTGAAAACGACGACGCTTCATGTTGTCCAGAGACCAAAAGGTCTCGTCTAAGTATCACACGCGACTGAGTAATCCCTCTCTTTCTCTCTTCCTTCTTTCGCTCTCGCTGGATCCCTCGCCGAGTCGCTGAAATCGAAAGATCAATTCAAAATGCCCTCGCCGACGCCCTTTACAAACGCCTCGAATATGCTCCGGCACCGCCTTCTCCCTTCTCTCCGCACCCGCGGTGGAGCCGCCGCCGGACAGAGCCGGTGGACCAGTCCCGGTCACGAGGAGCGCCCCAAAGGGTATCTTTTCAATCGGACGCCACCTCCACCAGGTGAGTCCCGTAAATGGGAGGATTGGGAGCTTCCATGTTATGTTACTAGTTTTCTTACTATCGTGATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAGGCCCTCGAGCGCCTTGAGATGGAGAAGCTGGGTATCTCTGGCTCTGGATCATCTGAATCTGATTGAATTTCGTGGTCCTTGTGCACTTTCGGGAACTGGGTTGTCTGATTTTTATTCCTCCCGTTGGAAAGGGGTTTCGGATATATGGTGGGTTTCATGAGATGGTGTCGATATCCTGTAGTTCAATAAGTTTTCCTACATGTTTTTGCTGACTCTTTTGGAGCTTCAATAACTGCTTCATTTTTAACTGTTAGCTTTGGACATCTTTGACGTCGTAAATGTCAAGTATTTGAGAATTTTAACTTTCTGCTGTGTTTCAATTCAGATTCCAATGTGAATTATATATACGGATTCTCTAATAATTTAGGTCCGCTGGATGTCTTATGATATTGATTTTAGTGGCAACTTTTTTTTTT

mRNA sequence

AAAAAAATTCCCATACGTAAATCGAGCTTCTGAAAACGACGACGCTTCATGTTGTCCAGAGACCAAAAGGTCTCGTCTAAGTATCACACGCGACTGAGTAATCCCTCTCTTTCTCTCTTCCTTCTTTCGCTCTCGCTGGATCCCTCGCCGAGTCGCTGAAATCGAAAGATCAATTCAAAATGCCCTCGCCGACGCCCTTTACAAACGCCTCGAATATGCTCCGGCACCGCCTTCTCCCTTCTCTCCGCACCCGCGGTGGAGCCGCCGCCGGACAGAGCCGGTGGACCAGTCCCGGTCACGAGGAGCGCCCCAAAGGGTATCTTTTCAATCGGACGCCACCTCCACCAGGTGAGTCCCGTAAATGGGAGGATTGGGAGCTTCCATGTTATGTTACTAGTTTTCTTACTATCGTGATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAGGCCCTCGAGCGCCTTGAGATGGAGAAGCTGGGTATCTCTGGCTCTGGATCATCTGAATCTGATTGAATTTCGTGGTCCTTGTGCACTTTCGGGAACTGGGTTGTCTGATTTTTATTCCTCCCGTTGGAAAGGGGTTTCGGATATATGGTGGGTTTCATGAGATGGTGTCGATATCCTGTAGTTCAATAAGTTTTCCTACATGTTTTTGCTGACTCTTTTGGAGCTTCAATAACTGCTTCATTTTTAACTGTTAGCTTTGGACATCTTTGACGTCGTAAATGTCAAGTATTTGAGAATTTTAACTTTCTGCTGTGTTTCAATTCAGATTCCAATGTGAATTATATATACGGATTCTCTAATAATTTAGGTCCGCTGGATGTCTTATGATATTGATTTTAGTGGCAACTTTTTTTTTT

Coding sequence (CDS)

ATGCCCTCGCCGACGCCCTTTACAAACGCCTCGAATATGCTCCGGCACCGCCTTCTCCCTTCTCTCCGCACCCGCGGTGGAGCCGCCGCCGGACAGAGCCGGTGGACCAGTCCCGGTCACGAGGAGCGCCCCAAAGGGTATCTTTTCAATCGGACGCCACCTCCACCAGGTGAGTCCCGTAAATGGGAGGATTGGGAGCTTCCATGTTATGTTACTAGTTTTCTTACTATCGTGATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAGGCCCTCGAGCGCCTTGAGATGGAGAAGCTGGGTATCTCTGGCTCTGGATCATCTGAATCTGATTGA

Protein sequence

MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD

Homology

[Close]

BLAST of Clc04G00540 vs. NCBI nr
Match: XP_038881129.1 (uncharacterized protein LOC120072731 [Benincasa hispida])

HSP 1 Score: 249.2 bits (635), Expect = 1.8e-62
Identity = 117/120 (97.50%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESR 60
           MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHE+RPKGYLFNRTPPPPG+SR
Sbjct: 1   MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 120
           KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLG+SGSGSSESD
Sbjct: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGVSGSGSSESD 120

[Close]

BLAST of Clc04G00540 vs. NCBI nr
Match: XP_022151653.1 (uncharacterized protein LOC111019565 [Momordica charantia])

HSP 1 Score: 240.0 bits (611), Expect = 1.1e-59
Identity = 112/120 (93.33%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESR 60
           MPSP PFT ASNMLRHRLLP+LRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPG+SR
Sbjct: 1   MPSPAPFTRASNMLRHRLLPTLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 120
           KWEDWELPCY+TSFLTIVILGVGLNAKPDLTIETWAHQKALERLEME +GIS SGSSESD
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENMGISASGSSESD 120

[Close]

BLAST of Clc04G00540 vs. NCBI nr
Match: XP_022966491.1 (uncharacterized protein LOC111466129 [Cucurbita maxima])

HSP 1 Score: 239.2 bits (609), Expect = 1.8e-59
Identity = 113/120 (94.17%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 1   MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESR 60
           MPSPTPF  ASNMLRHRLLPSLRTRGGAA GQSRWTSPGHEE+PKGYLFNRTPPPPG+SR
Sbjct: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEQPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 120
           KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEME L ISGSGSSESD
Sbjct: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAISGSGSSESD 120

[Close]

BLAST of Clc04G00540 vs. NCBI nr
Match: XP_022925065.1 (uncharacterized protein LOC111432424 [Cucurbita moschata] >KAG6595653.1 hypothetical protein SDJN03_12206, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027613.1 hypothetical protein SDJN02_11627, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 238.4 bits (607), Expect = 3.1e-59
Identity = 112/120 (93.33%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 1   MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESR 60
           MPSPTPF  ASNMLRHRLLPSLRTRGGAA GQSRWTSPGHEE+PKGYLFNRTPPPPG+SR
Sbjct: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 120
           KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEME L +SGSGSSESD
Sbjct: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGSSESD 120

[Close]

BLAST of Clc04G00540 vs. NCBI nr
Match: XP_023517134.1 (uncharacterized protein LOC111780983 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 237.3 bits (604), Expect = 7.0e-59
Identity = 112/120 (93.33%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESR 60
           MPSPTPF  ASNMLRHRLLPSLRTRGGAA GQSRWTSPGHEERPKGYLFNRTPPPPG+SR
Sbjct: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEERPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 120
           KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEME L +S SGSSESD
Sbjct: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSASGSSESD 120

[Close]

BLAST of Clc04G00540 vs. ExPASy TrEMBL
Match: A0A6J1DCT8 (uncharacterized protein LOC111019565 OS=Momordica charantia OX=3673 GN=LOC111019565 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 5.2e-60
Identity = 112/120 (93.33%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESR 60
           MPSP PFT ASNMLRHRLLP+LRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPG+SR
Sbjct: 1   MPSPAPFTRASNMLRHRLLPTLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 120
           KWEDWELPCY+TSFLTIVILGVGLNAKPDLTIETWAHQKALERLEME +GIS SGSSESD
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENMGISASGSSESD 120

[Close]

BLAST of Clc04G00540 vs. ExPASy TrEMBL
Match: A0A6J1HPH2 (uncharacterized protein LOC111466129 OS=Cucurbita maxima OX=3661 GN=LOC111466129 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 8.9e-60
Identity = 113/120 (94.17%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 1   MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESR 60
           MPSPTPF  ASNMLRHRLLPSLRTRGGAA GQSRWTSPGHEE+PKGYLFNRTPPPPG+SR
Sbjct: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEQPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 120
           KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEME L ISGSGSSESD
Sbjct: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAISGSGSSESD 120

[Close]

BLAST of Clc04G00540 vs. ExPASy TrEMBL
Match: A0A6J1EGU8 (uncharacterized protein LOC111432424 OS=Cucurbita moschata OX=3662 GN=LOC111432424 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.5e-59
Identity = 112/120 (93.33%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 1   MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESR 60
           MPSPTPF  ASNMLRHRLLPSLRTRGGAA GQSRWTSPGHEE+PKGYLFNRTPPPPG+SR
Sbjct: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 120
           KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEME L +SGSGSSESD
Sbjct: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGSSESD 120

[Close]

BLAST of Clc04G00540 vs. ExPASy TrEMBL
Match: A0A067KZT1 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_06813 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 8.7e-55
Identity = 105/118 (88.98%), Postives = 108/118 (91.53%), Query Frame = 0


Query: 1   MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESR 60
           MPSP PFT AS MLR RL  SLRTRGG AAG SRWTSPGHEERPKGYLFNRTPPP G+SR
Sbjct: 1   MPSPQPFTTASTMLRQRLASSLRTRGGGAAGTSRWTSPGHEERPKGYLFNRTPPPAGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSE 119
           KWEDWELPCY+TSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLG+SGSG SE
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGLSGSGESE 118

[Close]

BLAST of Clc04G00540 vs. ExPASy TrEMBL
Match: I3NMS3 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 PE=2 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.5e-54
Identity = 105/118 (88.98%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 1   MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESR 60
           MPS  PFT AS+MLR RL  SLRTRGGAAAG SRWTSPGHEERPKGYLFNRTPPPPG+SR
Sbjct: 1   MPSQQPFTTASSMLRQRLASSLRTRGGAAAGPSRWTSPGHEERPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSE 119
           KWEDWELPCY+TSFLTIVILGVGLNAKPDL+IETWAHQKALERLEMEKLG SGSG SE
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLSIETWAHQKALERLEMEKLGTSGSGESE 118

[Close]

BLAST of Clc04G00540 vs. TAIR 10
Match: AT2G42310.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57785.1); Has 115 Blast hits to 115 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 44; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 172.9 bits (437), Expect = 1.5e-43
Identity = 82/116 (70.69%), Postives = 91/116 (78.45%), Query Frame = 0


Query: 1   MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESR 60
           MPS    T A+  LR+R+       G  +AG SRW +PGHEERPKGY  NRTPP PG+SR
Sbjct: 1   MPSTQSLTVAAKTLRNRI---FSRSGSTSAGPSRWATPGHEERPKGYFMNRTPPAPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGS 117
           KWEDWELPCY+TSFLTIVILGVGLNAKPDL+IETWAHQKALERLEMEKL  +G  S
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLSIETWAHQKALERLEMEKLATAGDSS 113

[Close]

BLAST of Clc04G00540 vs. TAIR 10
Match: AT3G57785.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42310.1); Has 121 Blast hits to 121 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 48; Plants - 67; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 170.6 bits (431), Expect = 7.5e-43
Identity = 82/116 (70.69%), Postives = 92/116 (79.31%), Query Frame = 0


Query: 1   MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESR 60
           M S  P   A+  LR+R+    R+ G  + G SRW +PGHEERPKGY  NRTPPPPG+SR
Sbjct: 1   MASTKPLIVAAKTLRNRI--HFRS-GSTSTGPSRWATPGHEERPKGYFMNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGS 117
           KWEDWELPCY+TSFLTIVILGVGLNAKPDL+IETWAHQKALERLEMEKL  +G  S
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLSIETWAHQKALERLEMEKLASAGDSS 113

The following BLAST results are available for this feature:

BLAST of Clc04G00540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881129.1	1.8e-62	97.50	uncharacterized protein LOC120072731 [Benincasa hispida]	[more]
XP_022151653.1	1.1e-59	93.33	uncharacterized protein LOC111019565 [Momordica charantia]	[more]
XP_022966491.1	1.8e-59	94.17	uncharacterized protein LOC111466129 [Cucurbita maxima]	[more]
XP_022925065.1	3.1e-59	93.33	uncharacterized protein LOC111432424 [Cucurbita moschata] >KAG6595653.1 hypothet...	[more]
XP_023517134.1	7.0e-59	93.33	uncharacterized protein LOC111780983 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc04G00540 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc04G00540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCT8	5.2e-60	93.33	uncharacterized protein LOC111019565 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1HPH2	8.9e-60	94.17	uncharacterized protein LOC111466129 OS=Cucurbita maxima OX=3661 GN=LOC111466129...	[more]
A0A6J1EGU8	1.5e-59	93.33	uncharacterized protein LOC111432424 OS=Cucurbita moschata OX=3662 GN=LOC1114324...	[more]
A0A067KZT1	8.7e-55	88.98	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_06813 PE=4 SV=1	[more]
I3NMS3	1.5e-54	88.98	Uncharacterized protein OS=Hevea brasiliensis OX=3981 PE=2 SV=1	[more]

BLAST of Clc04G00540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42310.1	1.5e-43	70.69	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G57785.1	7.5e-43	70.69	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..60
None	No IPR available	PANTHER	PTHR40637:SF2	COMPLEX I SUBUNIT	coord: 8..116
None	No IPR available	PANTHER	PTHR40637	ESSS SUBUNIT OF NADH:UBIQUINONE OXIDOREDUCTASE (COMPLEX I) PROTEIN	coord: 8..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc04G00540.1	Clc04G00540.1	mRNA