Clc03G15980 (gene) Watermelon (cordophanus) v2

Overview
NameClc03G15980
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr03: 28291471 .. 28293659 (+)
RNA-Seq ExpressionClc03G15980
SyntenyClc03G15980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTTCCCATTTCTCTGCAACTTCAAAATCTCAGTTCCCCATTTGCTTACTTCAATCTCTCTTCCGTTACTTCAATTTCAGCAATGGATGATGAAATAGGGTATGGCCGCACTTTTGATTTTGCCGCACGTTTTCGTTTTTCTCTGCATTAGCTAGCATTTCATAATGATGAAAAGGTACATTTCATGGAGAATAAAAACAAGATCGAGTGTGGACGAACACCCTTTTGCCCAACTTTAAAGGTTGCGTGGGATAATTCCCATTTCGTTTTCCCCTGTTGTCGAAGGAATTTTTGTTTTTGAACAGAATTTCCTCAAGGGATCAAATTAATGATTGCTTTCTGGGTTTTACTTGCCTTCCCCGATTGATCTTTCCTTCATTCTTGTTTCACAAGATTTGTTTTAAAGCTATTTCACTCCTCTGTGATTCCTTTGTAACATTTGTTCATGTTTTGATCTGGGATTGTCTTTGTTTCTTTGGGTTTTCTTTATTTTGATTAGTGTGGCTGATAATTTGATTGAGATTCATGATTCTGATGGTCATTGGTGAAATGGGCTAAGTTTAGAAGTGATAAAAGTAGTTTAAGTAGTCAGTTTTTTACTCTTTTTTTTTTTTTTTTTCTTCTTGATTTTTAATGAGGTTTTGGATGTGTAAGATTCATTGTCCTTCATCCTTTTGCCTTTGCCACCCTTCCCCTCATATATATTCCACTGGATCAATACCACTTGATTTGGAAAACTCACCACATTTGCCTTCAGAAGTTGAGTCAGTCATTGGAACTTCTGGTTCCATTTTTGAGAACTTTGAATCCAAGCAAGAGTGTTGTAGAGATGACAAAGAGCAGGAGAATGAGTATGTAATCAAGAGTAGTTTGAGTAAGCCAAGTTTGAGGCCGGGCGTTCCGAATGAGAAGCATGTGAAAAAAGTACAATGGATGGATTTTTCAGGCAAAGAACTTGTTGAGATCAGGGAATTTGAACCTAGGTAATTTATCTTTCACTTTTCTTCTTTTCTTTCTGCATCCTATTTAAGATTCAAGGGTCTGGTTTTTACGTCTCATGAATCATGATTGAGAAGTCAAATTTCATCTAAATAATTGAAATACACTATCTTCCTTTAATTTAATTATTTGATTTTAGAATCTTTACATCTCATGAATCATGTTTGAGAAGATCAGATGTCATCTAAATGATTGAAATACAGTATCTTCACGTTGATTTAATTATTTGATTTAAGAATGGATGTGAAAAAGTACAATGGATGGGTTTTGAAAATCAAGCCTATTTCCTCTCAAATTCCTAATATGATTTTCCTCTTTCTTAAGTAAAATAGTTAATTCTTAGCTAAATTTGAAAAACAAAAACAAGTTTTTAAAAACCACTTTTTTAGTTTTAAAATTGGATTGGTTTTTGAAAACATTGGTAAAAAGTAGATAACAAAGCAAGAAATTTAGGAATGGGAAGTGTGTTTATAGGCTTTAATTTTAAAAACTAAAAAACTAAAAACCAAATGGTTACCAAATGGTTACCAAACGGCCTAAGTTACTTAAATAATCAAGTTATAAAACATAATATGGTCATATTCCCACGACGATTATTAGGAGGTATTTAGCTTTGTGGAAGTGGGAAAAAGGAAGTGATGAAACAAAATGGACTTGGAGAGGTGGAACTACAATTGCATTTGATTCTTAAGATGTTCATATCAGTTGAAAAGCTTTAGAAAATGGAGAAATCACACACACACAGAAATTACCATTGCTTGAGAATGATGCTTCATGTTCCTATTCCTAGGAAGAGGTAGCAAACTAACAATTGGGACGATTGCTGTTTCTGATTACTGATTTTGTGTGTGTGCGCGTGCACATGTTTTTCTAATGCAACAGTGAAGCTGAAGATTCTGATTATGAAGGTGAAGATAACAGGAGCTGCATCTGTACTATTTTATGAAATTCCTCAATAACTTATTCTGTCAAATTTAATAGGAAGGGGAAGTAGCCGACGAAGCCCAGTGAATGTCTGTCACAATTATATTCATCCTGAAACATCTATACCTTGGTTGAAAATTGGGATTTAGTATTCCTTGGTGCTTCATTGTTTTCATTTCTCACATGAGAATATGTTGTAAGAATGAAATGCAAAATACAACTGTATTTACCAATAAAGTATCTATTTATTTATTTTATGAAAAAAA

mRNA sequence

GCTTCCCATTTCTCTGCAACTTCAAAATCTCAGTTCCCCATTTGCTTACTTCAATCTCTCTTCCGTTACTTCAATTTCAGCAATGGATGATGAAATAGGGTTTTGGATGTGTAAGATTCATTGTCCTTCATCCTTTTGCCTTTGCCACCCTTCCCCTCATATATATTCCACTGGATCAATACCACTTGATTTGGAAAACTCACCACATTTGCCTTCAGAAGTTGAGTCAGTCATTGGAACTTCTGGTTCCATTTTTGAGAACTTTGAATCCAAGCAAGAGTGTTGTAGAGATGACAAAGAGCAGGAGAATGAGTATGTAATCAAGAGTAGTTTGAGTAAGCCAAGTTTGAGGCCGGGCGTTCCGAATGAGAAGCATGTGAAAAAAGTACAATGGATGGATTTTTCAGGCAAAGAACTTGTTGAGATCAGGGAATTTGAACCTAGTGAAGCTGAAGATTCTGATTATGAAGGTGAAGATAACAGGAGCTGCATCTGTACTATTTTATGAAATTCCTCAATAACTTATTCTGTCAAATTTAATAGGAAGGGGAAGTAGCCGACGAAGCCCAGTGAATGTCTGTCACAATTATATTCATCCTGAAACATCTATACCTTGGTTGAAAATTGGGATTTAGTATTCCTTGGTGCTTCATTGTTTTCATTTCTCACATGAGAATATGTTGTAAGAATGAAATGCAAAATACAACTGTATTTACCAATAAAGTATCTATTTATTTATTTTATGAAAAAAA

Coding sequence (CDS)

ATGGATGATGAAATAGGGTTTTGGATGTGTAAGATTCATTGTCCTTCATCCTTTTGCCTTTGCCACCCTTCCCCTCATATATATTCCACTGGATCAATACCACTTGATTTGGAAAACTCACCACATTTGCCTTCAGAAGTTGAGTCAGTCATTGGAACTTCTGGTTCCATTTTTGAGAACTTTGAATCCAAGCAAGAGTGTTGTAGAGATGACAAAGAGCAGGAGAATGAGTATGTAATCAAGAGTAGTTTGAGTAAGCCAAGTTTGAGGCCGGGCGTTCCGAATGAGAAGCATGTGAAAAAAGTACAATGGATGGATTTTTCAGGCAAAGAACTTGTTGAGATCAGGGAATTTGAACCTAGTGAAGCTGAAGATTCTGATTATGAAGGTGAAGATAACAGGAGCTGCATCTGTACTATTTTATGA

Protein sequence

MDDEIGFWMCKIHCPSSFCLCHPSPHIYSTGSIPLDLENSPHLPSEVESVIGTSGSIFENFESKQECCRDDKEQENEYVIKSSLSKPSLRPGVPNEKHVKKVQWMDFSGKELVEIREFEPSEAEDSDYEGEDNRSCICTIL
Homology
BLAST of Clc03G15980 vs. NCBI nr
Match: XP_016901000.1 (PREDICTED: uncharacterized protein LOC103492420 [Cucumis melo])

HSP 1 Score: 238.0 bits (606), Expect = 4.8e-59
Identity = 118/137 (86.13%), Postives = 120/137 (87.59%), Query Frame = 0

Query: 7   FWMCKIHCPSSFCLCHPSPHIYSTGSIPLDLENSPHLPSEVESVIGTSGSIFENFESKQE 66
           FWMCKIHCPSSFCLC P+PHIYSTGSIPLDLENS HLPSEVESVIGTSGSI E  ESKQE
Sbjct: 3   FWMCKIHCPSSFCLCQPAPHIYSTGSIPLDLENSSHLPSEVESVIGTSGSIVETLESKQE 62

Query: 67  CC--RDDKEQENEYVIKSSLSKPSLRPGVPNEKHVKKVQWMDFSGKELVEIREFEPSEAE 126
           C    DDK QENEY IKSSL KPSLR GV  EKHVK+VQWMDFSGKELVEIREFE SEAE
Sbjct: 63  CRDESDDKVQENEYGIKSSLRKPSLRSGVSKEKHVKRVQWMDFSGKELVEIREFEASEAE 122

Query: 127 DSDYEGEDNRSCICTIL 142
           DSDYE EDNRSCICTIL
Sbjct: 123 DSDYESEDNRSCICTIL 139

BLAST of Clc03G15980 vs. NCBI nr
Match: XP_038879679.1 (uncharacterized protein LOC120071456 [Benincasa hispida])

HSP 1 Score: 234.2 bits (596), Expect = 7.0e-58
Identity = 115/135 (85.19%), Postives = 119/135 (88.15%), Query Frame = 0

Query: 7   FWMCKIHCPSSFCLCHPSPHIYSTGSIPLDLENSPHLPSEVESVIGTSGSIFENFESKQE 66
           FWMCKIHCPSSFCLC PSPHIYSTGS+PLDLENSPHLPSEV+SVIG S SI E FESKQE
Sbjct: 3   FWMCKIHCPSSFCLCQPSPHIYSTGSVPLDLENSPHLPSEVDSVIGISDSIVETFESKQE 62

Query: 67  CCRDDKEQENEYVIKSSLSKPSLRPGVPNEKHVKKVQWMDFSGKELVEIREFEPSEAEDS 126
            CRDDKE     VIKSSL KPSLR  +P EKHVK+VQWMDFSGKELVEIREFEPSEAEDS
Sbjct: 63  -CRDDKES----VIKSSLKKPSLRSAIPKEKHVKRVQWMDFSGKELVEIREFEPSEAEDS 122

Query: 127 DYEGEDNRSCICTIL 142
           DYEGE NRSCICTIL
Sbjct: 123 DYEGEYNRSCICTIL 132

BLAST of Clc03G15980 vs. NCBI nr
Match: XP_004144070.1 (uncharacterized protein LOC101217749 [Cucumis sativus] >KGN66356.1 hypothetical protein Csa_006876 [Cucumis sativus])

HSP 1 Score: 229.9 bits (585), Expect = 1.3e-56
Identity = 117/138 (84.78%), Postives = 119/138 (86.23%), Query Frame = 0

Query: 7   FWMCKIHCPSSFCLCHPSPHIYSTGSIPLDLENSPHLPSEVESVIGTSGSIFENFESKQE 66
           FWMCKIHCPSSFCLC P+PHIYSTGSIPLDLENS HLPSEVESVIGTS SI E  ESKQE
Sbjct: 3   FWMCKIHCPSSFCLCQPAPHIYSTGSIPLDLENSSHLPSEVESVIGTSVSIVETLESKQE 62

Query: 67  CCRD---DKEQENEYVIKSSLSKPSLRPGVPNEKHVKKVQWMDFSGKELVEIREFEPSEA 126
            CRD   DK QENEY IKSSL K SLR GV  EKHVK+VQWMDFSGKELVEIREFE SEA
Sbjct: 63  -CRDESGDKVQENEYGIKSSLRKSSLRSGVSKEKHVKRVQWMDFSGKELVEIREFEASEA 122

Query: 127 EDSDYEGEDNRSCICTIL 142
           EDSDYE EDNRSCICTIL
Sbjct: 123 EDSDYESEDNRSCICTIL 139

BLAST of Clc03G15980 vs. NCBI nr
Match: XP_022147688.1 (uncharacterized protein LOC111016556 [Momordica charantia])

HSP 1 Score: 222.6 bits (566), Expect = 2.1e-54
Identity = 109/135 (80.74%), Postives = 115/135 (85.19%), Query Frame = 0

Query: 7   FWMCKIHCPSSFCLCHPSPHIYSTGSIPLDLENSPHLPSEVESVIGTSGSIFENFESKQE 66
           FWMCKIHCPSSFCLC PSP I +TGS+PL LENSPHLPSEVE+VIGTS SI + FE KQE
Sbjct: 3   FWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFKQE 62

Query: 67  CCRDDKEQENEYVIKSSLSKPSLRPGVPNEKHVKKVQWMDFSGKELVEIREFEPSEAEDS 126
            CRDDKEQE EY IKSSL K SL+ G P  KH KKVQWMDFSGKELVEIREFEPSE ED+
Sbjct: 63  -CRDDKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKVQWMDFSGKELVEIREFEPSEGEDT 122

Query: 127 DYEGEDNRSCICTIL 142
           DYE EDNRSCICTIL
Sbjct: 123 DYEDEDNRSCICTIL 136

BLAST of Clc03G15980 vs. NCBI nr
Match: KAA0055721.1 (uncharacterized protein E6C27_scaffold181G001040 [Cucumis melo var. makuwa] >TYK09971.1 uncharacterized protein E5676_scaffold16G001000 [Cucumis melo var. makuwa])

HSP 1 Score: 197.2 bits (500), Expect = 9.4e-47
Identity = 98/115 (85.22%), Postives = 100/115 (86.96%), Query Frame = 0

Query: 7   FWMCKIHCPSSFCLCHPSPHIYSTGSIPLDLENSPHLPSEVESVIGTSGSIFENFESKQE 66
           FWMCKIHCPSSFCLC P+PHIYSTGSIPLDLENS HLPSEVESVIGTSGSI E  ESKQE
Sbjct: 3   FWMCKIHCPSSFCLCQPAPHIYSTGSIPLDLENSSHLPSEVESVIGTSGSIVETLESKQE 62

Query: 67  CC--RDDKEQENEYVIKSSLSKPSLRPGVPNEKHVKKVQWMDFSGKELVEIREFE 120
           C    DDK QENEY IKSSL KPSLR GV  EKHVK+VQWMDFSGKELVEIREFE
Sbjct: 63  CRDESDDKVQENEYGIKSSLRKPSLRSGVSKEKHVKRVQWMDFSGKELVEIREFE 117

BLAST of Clc03G15980 vs. ExPASy TrEMBL
Match: A0A1S4DZ54 (uncharacterized protein LOC103492420 OS=Cucumis melo OX=3656 GN=LOC103492420 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.3e-59
Identity = 118/137 (86.13%), Postives = 120/137 (87.59%), Query Frame = 0

Query: 7   FWMCKIHCPSSFCLCHPSPHIYSTGSIPLDLENSPHLPSEVESVIGTSGSIFENFESKQE 66
           FWMCKIHCPSSFCLC P+PHIYSTGSIPLDLENS HLPSEVESVIGTSGSI E  ESKQE
Sbjct: 3   FWMCKIHCPSSFCLCQPAPHIYSTGSIPLDLENSSHLPSEVESVIGTSGSIVETLESKQE 62

Query: 67  CC--RDDKEQENEYVIKSSLSKPSLRPGVPNEKHVKKVQWMDFSGKELVEIREFEPSEAE 126
           C    DDK QENEY IKSSL KPSLR GV  EKHVK+VQWMDFSGKELVEIREFE SEAE
Sbjct: 63  CRDESDDKVQENEYGIKSSLRKPSLRSGVSKEKHVKRVQWMDFSGKELVEIREFEASEAE 122

Query: 127 DSDYEGEDNRSCICTIL 142
           DSDYE EDNRSCICTIL
Sbjct: 123 DSDYESEDNRSCICTIL 139

BLAST of Clc03G15980 vs. ExPASy TrEMBL
Match: A0A0A0M2C9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G599500 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 6.4e-57
Identity = 117/138 (84.78%), Postives = 119/138 (86.23%), Query Frame = 0

Query: 7   FWMCKIHCPSSFCLCHPSPHIYSTGSIPLDLENSPHLPSEVESVIGTSGSIFENFESKQE 66
           FWMCKIHCPSSFCLC P+PHIYSTGSIPLDLENS HLPSEVESVIGTS SI E  ESKQE
Sbjct: 3   FWMCKIHCPSSFCLCQPAPHIYSTGSIPLDLENSSHLPSEVESVIGTSVSIVETLESKQE 62

Query: 67  CCRD---DKEQENEYVIKSSLSKPSLRPGVPNEKHVKKVQWMDFSGKELVEIREFEPSEA 126
            CRD   DK QENEY IKSSL K SLR GV  EKHVK+VQWMDFSGKELVEIREFE SEA
Sbjct: 63  -CRDESGDKVQENEYGIKSSLRKSSLRSGVSKEKHVKRVQWMDFSGKELVEIREFEASEA 122

Query: 127 EDSDYEGEDNRSCICTIL 142
           EDSDYE EDNRSCICTIL
Sbjct: 123 EDSDYESEDNRSCICTIL 139

BLAST of Clc03G15980 vs. ExPASy TrEMBL
Match: A0A6J1D1Z7 (uncharacterized protein LOC111016556 OS=Momordica charantia OX=3673 GN=LOC111016556 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.0e-54
Identity = 109/135 (80.74%), Postives = 115/135 (85.19%), Query Frame = 0

Query: 7   FWMCKIHCPSSFCLCHPSPHIYSTGSIPLDLENSPHLPSEVESVIGTSGSIFENFESKQE 66
           FWMCKIHCPSSFCLC PSP I +TGS+PL LENSPHLPSEVE+VIGTS SI + FE KQE
Sbjct: 3   FWMCKIHCPSSFCLCQPSPQINTTGSVPLKLENSPHLPSEVEAVIGTSVSIVDTFEFKQE 62

Query: 67  CCRDDKEQENEYVIKSSLSKPSLRPGVPNEKHVKKVQWMDFSGKELVEIREFEPSEAEDS 126
            CRDDKEQE EY IKSSL K SL+ G P  KH KKVQWMDFSGKELVEIREFEPSE ED+
Sbjct: 63  -CRDDKEQEPEYGIKSSLRKTSLKLGAPEGKHAKKVQWMDFSGKELVEIREFEPSEGEDT 122

Query: 127 DYEGEDNRSCICTIL 142
           DYE EDNRSCICTIL
Sbjct: 123 DYEDEDNRSCICTIL 136

BLAST of Clc03G15980 vs. ExPASy TrEMBL
Match: A0A5D3CDR2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001000 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 4.6e-47
Identity = 98/115 (85.22%), Postives = 100/115 (86.96%), Query Frame = 0

Query: 7   FWMCKIHCPSSFCLCHPSPHIYSTGSIPLDLENSPHLPSEVESVIGTSGSIFENFESKQE 66
           FWMCKIHCPSSFCLC P+PHIYSTGSIPLDLENS HLPSEVESVIGTSGSI E  ESKQE
Sbjct: 3   FWMCKIHCPSSFCLCQPAPHIYSTGSIPLDLENSSHLPSEVESVIGTSGSIVETLESKQE 62

Query: 67  CC--RDDKEQENEYVIKSSLSKPSLRPGVPNEKHVKKVQWMDFSGKELVEIREFE 120
           C    DDK QENEY IKSSL KPSLR GV  EKHVK+VQWMDFSGKELVEIREFE
Sbjct: 63  CRDESDDKVQENEYGIKSSLRKPSLRSGVSKEKHVKRVQWMDFSGKELVEIREFE 117

BLAST of Clc03G15980 vs. ExPASy TrEMBL
Match: A0A6J1EXK0 (uncharacterized protein LOC111439183 OS=Cucurbita moschata OX=3662 GN=LOC111439183 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 2.1e-44
Identity = 95/135 (70.37%), Postives = 102/135 (75.56%), Query Frame = 0

Query: 7   FWMCKIHCPSSFCLCHPSPHIYSTGSIPLDLENSPHLPSEVESVIGTSGSIFENFESKQE 66
           FWMCKIHCPSS CLC PSPHI+STGS+ LDL+NSPHLPS    VI TSGS  E  E K+ 
Sbjct: 3   FWMCKIHCPSSLCLCQPSPHIHSTGSVSLDLQNSPHLPSRDVPVIETSGSSVETLEPKR- 62

Query: 67  CCRDDKEQENEYVIKSSLSKPSLRPGVPNEKHVKKVQWMDFSGKELVEIREFEPSEAEDS 126
               DK  E+E+  KSSL KP+ R GV  EKHVK VQWMDFSGKEL EIREFE SE EDS
Sbjct: 63  ----DKGPESEFGNKSSLRKPNSRSGVSKEKHVKTVQWMDFSGKELAEIREFEASEDEDS 122

Query: 127 DYEGEDNRSCICTIL 142
           DYE EDN SCICTIL
Sbjct: 123 DYEDEDNGSCICTIL 132

BLAST of Clc03G15980 vs. TAIR 10
Match: AT3G13480.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55475.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 100.9 bits (250), Expect = 8.6e-22
Identity = 63/160 (39.38%), Postives = 83/160 (51.88%), Query Frame = 0

Query: 9   MCKIHCPSSFCLCHPSPHIYSTGSIPLDLENS-PHLPS---------------------E 68
           +CKI CPS  C C PSPHIY++GS  L LEN+ P + S                     E
Sbjct: 17  LCKIQCPSFICFCKPSPHIYASGS--LKLENTFPQVSSSTTVVDDRDHDDNDDDDAHVEE 76

Query: 69  VESVIGTSGSIFENFESKQECCRDDKEQENE-----YVIKSSLSKPSLRPGVPNEKHVKK 128
            E V+     +      +++C  + K++E E      ++KSSL K  L       K  KK
Sbjct: 77  EEVVVDHVDGLLTEVVREEDCALEGKKEEEESLSNGEILKSSLKKEVLDSADGGRKEKKK 136

Query: 129 VQWMDFSGKELVEIREFEPSEAEDSDYEGEDNRSCICTIL 142
           VQW+D  GKEL EIREFE SE ED  Y+G+  +SC+C IL
Sbjct: 137 VQWVDLMGKELAEIREFESSEEEDVRYDGD--QSCVCVIL 172

BLAST of Clc03G15980 vs. TAIR 10
Match: AT1G55475.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 61.6 bits (148), Expect = 5.8e-10
Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 0

Query: 60  NFESKQECCRDDKEQENEYV-----IKSSLSKPSLRPGVPNEKHVKKVQWMDFSGKELVE 119
           N E ++E   D KE+E + V     +KSSL K         ++  KKVQW+D  GKEL E
Sbjct: 38  NAEDREEV--DAKEEEGQIVGDTLTLKSSLRKVDSNSTEAEKREKKKVQWVDVIGKELAE 97

Query: 120 IREFEPSEAEDSDYEGEDNRSCICTIL 142
           IREFEPS+ +D D   +  ++C+C IL
Sbjct: 98  IREFEPSDEDDID--SDRGKTCVCIIL 120

BLAST of Clc03G15980 vs. TAIR 10
Match: AT1G34010.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22790.2); Has 74 Blast hits to 74 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 3.2e-08
Identity = 32/82 (39.02%), Postives = 45/82 (54.88%), Query Frame = 0

Query: 73  EQENEYVIKSSLSKPSL-----------RPGVPNEKHVKKVQWMDFSGKELVEIREFEPS 132
           E  N + +KSSL K S            R GV +    +KVQW D  G E+ E+REFEPS
Sbjct: 101 EVTNRFALKSSLKKRSFSDVVIGDDDVSRDGVVDHIDRRKVQWPDTCGIEIAEVREFEPS 160

Query: 133 EAEDS--DYEGEDNRSCICTIL 142
           E ++S  ++     +SC+CTI+
Sbjct: 161 EVDESEDEFHHGSGKSCMCTIM 182

BLAST of Clc03G15980 vs. TAIR 10
Match: AT1G22790.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34010.1); Has 67 Blast hits to 67 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 4.3e-05
Identity = 21/44 (47.73%), Postives = 28/44 (63.64%), Query Frame = 0

Query: 100 KKVQWMDFSGKELVEIREFEPSE--AEDSDYEGEDNRSCICTIL 142
           +KVQW D  G EL ++REFEPSE    D ++E    R+C C I+
Sbjct: 173 RKVQWPDACGSELTQVREFEPSEMGLSDEEWEVGRQRTCSCVIM 216

BLAST of Clc03G15980 vs. TAIR 10
Match: AT1G22790.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34010.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 4.3e-05
Identity = 21/44 (47.73%), Postives = 28/44 (63.64%), Query Frame = 0

Query: 100 KKVQWMDFSGKELVEIREFEPSE--AEDSDYEGEDNRSCICTIL 142
           +KVQW D  G EL ++REFEPSE    D ++E    R+C C I+
Sbjct: 173 RKVQWPDACGSELTQVREFEPSEMGLSDEEWEVGRQRTCSCVIM 216

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_016901000.14.8e-5986.13PREDICTED: uncharacterized protein LOC103492420 [Cucumis melo][more]
XP_038879679.17.0e-5885.19uncharacterized protein LOC120071456 [Benincasa hispida][more]
XP_004144070.11.3e-5684.78uncharacterized protein LOC101217749 [Cucumis sativus] >KGN66356.1 hypothetical ... [more]
XP_022147688.12.1e-5480.74uncharacterized protein LOC111016556 [Momordica charantia][more]
KAA0055721.19.4e-4785.22uncharacterized protein E6C27_scaffold181G001040 [Cucumis melo var. makuwa] >TYK... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S4DZ542.3e-5986.13uncharacterized protein LOC103492420 OS=Cucumis melo OX=3656 GN=LOC103492420 PE=... [more]
A0A0A0M2C96.4e-5784.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G599500 PE=4 SV=1[more]
A0A6J1D1Z71.0e-5480.74uncharacterized protein LOC111016556 OS=Momordica charantia OX=3673 GN=LOC111016... [more]
A0A5D3CDR24.6e-4785.22Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1EXK02.1e-4470.37uncharacterized protein LOC111439183 OS=Cucurbita moschata OX=3662 GN=LOC1114391... [more]
Match NameE-valueIdentityDescription
AT3G13480.18.6e-2239.38unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G55475.15.8e-1042.53unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G34010.13.2e-0839.02unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G22790.14.3e-0547.73unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G22790.24.3e-0547.73unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33401LIGHT-HARVESTING COMPLEX-LIKE PROTEIN OHP2, CHLOROPLASTICcoord: 9..140

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc03G15980.2Clc03G15980.2mRNA