Clc03G15980 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCTTCCCATTTCTCTGCAACTTCAAAATCTCAGTTCCCCATTTGCTTACTTCAATCTCTCTTCCGTTACTTCAATTTCAGCAATGGATGATGAAATAGGGTATGGCCGCACTTTTGATTTTGCCGCACGTTTTCGTTTTTCTCTGCATTAGCTAGCATTTCATAATGATGAAAAGGTACATTTCATGGAGAATAAAAACAAGATCGAGTGTGGACGAACACCCTTTTGCCCAACTTTAAAGGTTGCGTGGGATAATTCCCATTTCGTTTTCCCCTGTTGTCGAAGGAATTTTTGTTTTTGAACAGAATTTCCTCAAGGGATCAAATTAATGATTGCTTTCTGGGTTTTACTTGCCTTCCCCGATTGATCTTTCCTTCATTCTTGTTTCACAAGATTTGTTTTAAAGCTATTTCACTCCTCTGTGATTCCTTTGTAACATTTGTTCATGTTTTGATCTGGGATTGTCTTTGTTTCTTTGGGTTTTCTTTATTTTGATTAGTGTGGCTGATAATTTGATTGAGATTCATGATTCTGATGGTCATTGGTGAAATGGGCTAAGTTTAGAAGTGATAAAAGTAGTTTAAGTAGTCAGTTTTTTACTCTTTTTTTTTTTTTTTTTCTTCTTGATTTTTAATGAGGTTTTGGATGTGTAAGATTCATTGTCCTTCATCCTTTTGCCTTTGCCACCCTTCCCCTCATATATATTCCACTGGATCAATACCACTTGATTTGGAAAACTCACCACATTTGCCTTCAGAAGTTGAGTCAGTCATTGGAACTTCTGGTTCCATTTTTGAGAACTTTGAATCCAAGCAAGAGTGTTGTAGAGATGACAAAGAGCAGGAGAATGAGTATGTAATCAAGAGTAGTTTGAGTAAGCCAAGTTTGAGGCCGGGCGTTCCGAATGAGAAGCATGTGAAAAAAGTACAATGGATGGATTTTTCAGGCAAAGAACTTGTTGAGATCAGGGAATTTGAACCTAGGTAATTTATCTTTCACTTTTCTTCTTTTCTTTCTGCATCCTATTTAAGATTCAAGGGTCTGGTTTTTACGTCTCATGAATCATGATTGAGAAGTCAAATTTCATCTAAATAATTGAAATACACTATCTTCCTTTAATTTAATTATTTGATTTTAGAATCTTTACATCTCATGAATCATGTTTGAGAAGATCAGATGTCATCTAAATGATTGAAATACAGTATCTTCACGTTGATTTAATTATTTGATTTAAGAATGGATGTGAAAAAGTACAATGGATGGGTTTTGAAAATCAAGCCTATTTCCTCTCAAATTCCTAATATGATTTTCCTCTTTCTTAAGTAAAATAGTTAATTCTTAGCTAAATTTGAAAAACAAAAACAAGTTTTTAAAAACCACTTTTTTAGTTTTAAAATTGGATTGGTTTTTGAAAACATTGGTAAAAAGTAGATAACAAAGCAAGAAATTTAGGAATGGGAAGTGTGTTTATAGGCTTTAATTTTAAAAACTAAAAAACTAAAAACCAAATGGTTACCAAATGGTTACCAAACGGCCTAAGTTACTTAAATAATCAAGTTATAAAACATAATATGGTCATATTCCCACGACGATTATTAGGAGGTATTTAGCTTTGTGGAAGTGGGAAAAAGGAAGTGATGAAACAAAATGGACTTGGAGAGGTGGAACTACAATTGCATTTGATTCTTAAGATGTTCATATCAGTTGAAAAGCTTTAGAAAATGGAGAAATCACACACACACAGAAATTACCATTGCTTGAGAATGATGCTTCATGTTCCTATTCCTAGGAAGAGGTAGCAAACTAACAATTGGGACGATTGCTGTTTCTGATTACTGATTTTGTGTGTGTGCGCGTGCACATGTTTTTCTAATGCAACAGTGAAGCTGAAGATTCTGATTATGAAGGTGAAGATAACAGGAGCTGCATCTGTACTATTTTATGAAATTCCTCAATAACTTATTCTGTCAAATTTAATAGGAAGGGGAAGTAGCCGACGAAGCCCAGTGAATGTCTGTCACAATTATATTCATCCTGAAACATCTATACCTTGGTTGAAAATTGGGATTTAGTATTCCTTGGTGCTTCATTGTTTTCATTTCTCACATGAGAATATGTTGTAAGAATGAAATGCAAAATACAACTGTATTTACCAATAAAGTATCTATTTATTTATTTTATGAAAAAAA GCTTCCCATTTCTCTGCAACTTCAAAATCTCAGTTCCCCATTTGCTTACTTCAATCTCTCTTCCGTTACTTCAATTTCAGCAATGGATGATGAAATAGGGTTTTGGATGTGTAAGATTCATTGTCCTTCATCCTTTTGCCTTTGCCACCCTTCCCCTCATATATATTCCACTGGATCAATACCACTTGATTTGGAAAACTCACCACATTTGCCTTCAGAAGTTGAGTCAGTCATTGGAACTTCTGGTTCCATTTTTGAGAACTTTGAATCCAAGCAAGAGTGTTGTAGAGATGACAAAGAGCAGGAGAATGAGTATGTAATCAAGAGTAGTTTGAGTAAGCCAAGTTTGAGGCCGGGCGTTCCGAATGAGAAGCATGTGAAAAAAGTACAATGGATGGATTTTTCAGGCAAAGAACTTGTTGAGATCAGGGAATTTGAACCTAGTGAAGCTGAAGATTCTGATTATGAAGGTGAAGATAACAGGAGCTGCATCTGTACTATTTTATGAAATTCCTCAATAACTTATTCTGTCAAATTTAATAGGAAGGGGAAGTAGCCGACGAAGCCCAGTGAATGTCTGTCACAATTATATTCATCCTGAAACATCTATACCTTGGTTGAAAATTGGGATTTAGTATTCCTTGGTGCTTCATTGTTTTCATTTCTCACATGAGAATATGTTGTAAGAATGAAATGCAAAATACAACTGTATTTACCAATAAAGTATCTATTTATTTATTTTATGAAAAAAA ATGGATGATGAAATAGGGTTTTGGATGTGTAAGATTCATTGTCCTTCATCCTTTTGCCTTTGCCACCCTTCCCCTCATATATATTCCACTGGATCAATACCACTTGATTTGGAAAACTCACCACATTTGCCTTCAGAAGTTGAGTCAGTCATTGGAACTTCTGGTTCCATTTTTGAGAACTTTGAATCCAAGCAAGAGTGTTGTAGAGATGACAAAGAGCAGGAGAATGAGTATGTAATCAAGAGTAGTTTGAGTAAGCCAAGTTTGAGGCCGGGCGTTCCGAATGAGAAGCATGTGAAAAAAGTACAATGGATGGATTTTTCAGGCAAAGAACTTGTTGAGATCAGGGAATTTGAACCTAGTGAAGCTGAAGATTCTGATTATGAAGGTGAAGATAACAGGAGCTGCATCTGTACTATTTTATGA MDDEIGFWMCKIHCPSSFCLCHPSPHIYSTGSIPLDLENSPHLPSEVESVIGTSGSIFENFESKQECCRDDKEQENEYVIKSSLSKPSLRPGVPNEKHVKKVQWMDFSGKELVEIREFEPSEAEDSDYEGEDNRSCICTIL Homology
BLAST of Clc03G15980 vs. NCBI nr
Match: XP_016901000.1 (PREDICTED: uncharacterized protein LOC103492420 [Cucumis melo]) HSP 1 Score: 238.0 bits (606), Expect = 4.8e-59 Identity = 118/137 (86.13%), Postives = 120/137 (87.59%), Query Frame = 0
BLAST of Clc03G15980 vs. NCBI nr
Match: XP_038879679.1 (uncharacterized protein LOC120071456 [Benincasa hispida]) HSP 1 Score: 234.2 bits (596), Expect = 7.0e-58 Identity = 115/135 (85.19%), Postives = 119/135 (88.15%), Query Frame = 0
BLAST of Clc03G15980 vs. NCBI nr
Match: XP_004144070.1 (uncharacterized protein LOC101217749 [Cucumis sativus] >KGN66356.1 hypothetical protein Csa_006876 [Cucumis sativus]) HSP 1 Score: 229.9 bits (585), Expect = 1.3e-56 Identity = 117/138 (84.78%), Postives = 119/138 (86.23%), Query Frame = 0
BLAST of Clc03G15980 vs. NCBI nr
Match: XP_022147688.1 (uncharacterized protein LOC111016556 [Momordica charantia]) HSP 1 Score: 222.6 bits (566), Expect = 2.1e-54 Identity = 109/135 (80.74%), Postives = 115/135 (85.19%), Query Frame = 0
BLAST of Clc03G15980 vs. NCBI nr
Match: KAA0055721.1 (uncharacterized protein E6C27_scaffold181G001040 [Cucumis melo var. makuwa] >TYK09971.1 uncharacterized protein E5676_scaffold16G001000 [Cucumis melo var. makuwa]) HSP 1 Score: 197.2 bits (500), Expect = 9.4e-47 Identity = 98/115 (85.22%), Postives = 100/115 (86.96%), Query Frame = 0
BLAST of Clc03G15980 vs. ExPASy TrEMBL
Match: A0A1S4DZ54 (uncharacterized protein LOC103492420 OS=Cucumis melo OX=3656 GN=LOC103492420 PE=4 SV=1) HSP 1 Score: 238.0 bits (606), Expect = 2.3e-59 Identity = 118/137 (86.13%), Postives = 120/137 (87.59%), Query Frame = 0
BLAST of Clc03G15980 vs. ExPASy TrEMBL
Match: A0A0A0M2C9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G599500 PE=4 SV=1) HSP 1 Score: 229.9 bits (585), Expect = 6.4e-57 Identity = 117/138 (84.78%), Postives = 119/138 (86.23%), Query Frame = 0
BLAST of Clc03G15980 vs. ExPASy TrEMBL
Match: A0A6J1D1Z7 (uncharacterized protein LOC111016556 OS=Momordica charantia OX=3673 GN=LOC111016556 PE=4 SV=1) HSP 1 Score: 222.6 bits (566), Expect = 1.0e-54 Identity = 109/135 (80.74%), Postives = 115/135 (85.19%), Query Frame = 0
BLAST of Clc03G15980 vs. ExPASy TrEMBL
Match: A0A5D3CDR2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001000 PE=4 SV=1) HSP 1 Score: 197.2 bits (500), Expect = 4.6e-47 Identity = 98/115 (85.22%), Postives = 100/115 (86.96%), Query Frame = 0
BLAST of Clc03G15980 vs. ExPASy TrEMBL
Match: A0A6J1EXK0 (uncharacterized protein LOC111439183 OS=Cucurbita moschata OX=3662 GN=LOC111439183 PE=4 SV=1) HSP 1 Score: 188.3 bits (477), Expect = 2.1e-44 Identity = 95/135 (70.37%), Postives = 102/135 (75.56%), Query Frame = 0
BLAST of Clc03G15980 vs. TAIR 10
Match: AT3G13480.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55475.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 100.9 bits (250), Expect = 8.6e-22 Identity = 63/160 (39.38%), Postives = 83/160 (51.88%), Query Frame = 0
BLAST of Clc03G15980 vs. TAIR 10
Match: AT1G55475.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 61.6 bits (148), Expect = 5.8e-10 Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 0
BLAST of Clc03G15980 vs. TAIR 10
Match: AT1G34010.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22790.2); Has 74 Blast hits to 74 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 55.8 bits (133), Expect = 3.2e-08 Identity = 32/82 (39.02%), Postives = 45/82 (54.88%), Query Frame = 0
BLAST of Clc03G15980 vs. TAIR 10
Match: AT1G22790.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34010.1); Has 67 Blast hits to 67 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 45.4 bits (106), Expect = 4.3e-05 Identity = 21/44 (47.73%), Postives = 28/44 (63.64%), Query Frame = 0
BLAST of Clc03G15980 vs. TAIR 10
Match: AT1G22790.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34010.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 45.4 bits (106), Expect = 4.3e-05 Identity = 21/44 (47.73%), Postives = 28/44 (63.64%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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