Clc03G13930 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G13930
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr03: 24598379 .. 24599109 (-)
RNA-Seq Expression	Clc03G13930
Synteny	Clc03G13930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGTGAATGGATTTGATGTTCTCGAGTCGCAGCTTCATAAATTCGTCAATATCCAATCCATTTTCATCCCTCTCTCTCTCCCTAACTCTTTCTCTCTCTAAAATTCTCTCTCTCCTCTTCTCAAAACTATGCCTCGGCCGCGACACCAACGTCAGCTCTCCCAAGTTCTTCCGCCGGACCTGATTTCCGTCGAGGATCCATCTCAGATCTTGGACTTCGGCAGGGGAGTCGCCGGGGCAGTTTCCGGCCAACCCCATCAGGCATCTGAAACTTCTGCAAATGCTGCTGCCACTGCCGCCGCCGCCGCTGCCGTACTTCAGCGGTCCAAGAATCCTGCCGGTCAGGAAGGCTCCGGCGCCGGCCACTTCCCTCAGCTCCCGAAAACGCCGCCGTCTACTTGATCTCAACTCTCTCTTCTTAGTTTAATTTTCTCTCTCTAGATTTCATGTCTTTGTAATTTTAGTTTTTTCTTTTCCTTTTAGGTCACTGAGAGATTCTCTCTCTTTTCTGTGAGACCCAAAAATAAATGTGATGAAAGACATGGGTTCATGTTTCATCGTCTCCTATAATTACAAGGGTAAAACAAACGATTTACTCTGTTTTAACTACGATTTACATACACTTTTTTCTCCTTAAGTAATTTTAATTTAATGTCTAGATGTTGTGTGACTGTGGATGCCCGTGTATCTCAGCGTTTTACCAAAAAATTAAATATTAAAAAGTTAAATTGT

mRNA sequence

GCGTGAATGGATTTGATGTTCTCGAGTCGCAGCTTCATAAATTCGTCAATATCCAATCCATTTTCATCCCTCTCTCTCTCCCTAACTCTTTCTCTCTCTAAAATTCTCTCTCTCCTCTTCTCAAAACTATGCCTCGGCCGCGACACCAACGTCAGCTCTCCCAAGTTCTTCCGCCGGACCTGATTTCCGTCGAGGATCCATCTCAGATCTTGGACTTCGGCAGGGGAGTCGCCGGGGCAGTTTCCGGCCAACCCCATCAGGCATCTGAAACTTCTGCAAATGCTGCTGCCACTGCCGCCGCCGCCGCTGCCGTACTTCAGCGGTCCAAGAATCCTGCCGGTCAGGAAGGCTCCGGCGCCGGCCACTTCCCTCAGCTCCCGAAAACGCCGCCGTCTACTTGATCTCAACTCTCTCTTCTTAGTTTAATTTTCTCTCTCTAGATTTCATGTCTTTGTAATTTTAGTTTTTTCTTTTCCTTTTAGGTCACTGAGAGATTCTCTCTCTTTTCTGTGAGACCCAAAAATAAATGTGATGAAAGACATGGGTTCATGTTTCATCGTCTCCTATAATTACAAGGGTAAAACAAACGATTTACTCTGTTTTAACTACGATTTACATACACTTTTTTCTCCTTAAGTAATTTTAATTTAATGTCTAGATGTTGTGTGACTGTGGATGCCCGTGTATCTCAGCGTTTTACCAAAAAATTAAATATTAAAAAGTTAAATTGT

Coding sequence (CDS)

ATGCCTCGGCCGCGACACCAACGTCAGCTCTCCCAAGTTCTTCCGCCGGACCTGATTTCCGTCGAGGATCCATCTCAGATCTTGGACTTCGGCAGGGGAGTCGCCGGGGCAGTTTCCGGCCAACCCCATCAGGCATCTGAAACTTCTGCAAATGCTGCTGCCACTGCCGCCGCCGCCGCTGCCGTACTTCAGCGGTCCAAGAATCCTGCCGGTCAGGAAGGCTCCGGCGCCGGCCACTTCCCTCAGCTCCCGAAAACGCCGCCGTCTACTTGA

Protein sequence

MPRPRHQRQLSQVLPPDLISVEDPSQILDFGRGVAGAVSGQPHQASETSANAAATAAAAAAVLQRSKNPAGQEGSGAGHFPQLPKTPPST

Homology

[Close]

BLAST of Clc03G13930 vs. NCBI nr
Match: KGN66547.1 (hypothetical protein Csa_007065 [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 3.9e-30
Identity = 78/90 (86.67%), Postives = 80/90 (88.89%), Query Frame = 0


Query: 1  MPRPRHQRQLSQVLPPDLISVEDPSQILDFGRGVAGAVSGQPHQASETSANAAATAAAAA 60
          MPRPRHQRQLSQVLPPD IS EDPSQILDF  GVAGAVSGQPHQ S+ +ANAAA AAAAA
Sbjct: 1  MPRPRHQRQLSQVLPPDFISAEDPSQILDFSIGVAGAVSGQPHQPSQATANAAA-AAAAA 60

Query: 61 AVLQRSKNPAGQEGSGAGHFPQLPKTPPST 91
           VLQRSKNPAGQEGSGAGHF QLPKT PST
Sbjct: 61 TVLQRSKNPAGQEGSGAGHFSQLPKTAPST 89

[Close]

BLAST of Clc03G13930 vs. NCBI nr
Match: KAG6590166.1 (hypothetical protein SDJN03_15589, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.5 bits (293), Expect = 6.1e-23
Identity = 68/92 (73.91%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 1  MPRPRHQRQLSQVLPPDLISVEDPSQILDFGRGVAGAVSGQPHQASETSANAAATAAAAA 60
          MPRPRHQRQ SQVLPP+LIS  DPSQILDFG+ VA  VSGQPH+A+E    AA   A AA
Sbjct: 1  MPRPRHQRQPSQVLPPELISGVDPSQILDFGQAVARTVSGQPHKATE----AATNVATAA 60

Query: 61 AVLQRSKNPAGQE--GSGAGHFPQLPKTPPST 91
          AVLQRSK   GQE  GSG+GHFPQLPKTPPST
Sbjct: 61 AVLQRSKTSGGQEGSGSGSGHFPQLPKTPPST 88

[Close]

BLAST of Clc03G13930 vs. NCBI nr
Match: KAG6588222.1 (hypothetical protein SDJN03_16787, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.8 bits (268), Expect = 4.8e-20
Identity = 66/91 (72.53%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 1  MPRPRHQRQLSQVLPPDLISVEDPSQILDFGRGVAGAVSGQPHQASETSANAAATAAAAA 60
          MPRPRH RQ SQVLPP+LIS EDPSQILDF R VAGA SGQPHQA+  +A AAA AA AA
Sbjct: 1  MPRPRHHRQPSQVLPPELISGEDPSQILDFERPVAGAFSGQPHQAAPEAAAAAAAAANAA 60

Query: 61 A--VLQRSKNPAGQEGSGAGHFPQLPKTPPS 90
          A  V+Q+SK  A QE SGA  FPQL KTPPS
Sbjct: 61 ASTVIQQSKIAASQEVSGAEQFPQLTKTPPS 91

[Close]

BLAST of Clc03G13930 vs. ExPASy TrEMBL
Match: A0A0A0M0A1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629040 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.9e-30
Identity = 78/90 (86.67%), Postives = 80/90 (88.89%), Query Frame = 0


Query: 1  MPRPRHQRQLSQVLPPDLISVEDPSQILDFGRGVAGAVSGQPHQASETSANAAATAAAAA 60
          MPRPRHQRQLSQVLPPD IS EDPSQILDF  GVAGAVSGQPHQ S+ +ANAAA AAAAA
Sbjct: 1  MPRPRHQRQLSQVLPPDFISAEDPSQILDFSIGVAGAVSGQPHQPSQATANAAA-AAAAA 60

Query: 61 AVLQRSKNPAGQEGSGAGHFPQLPKTPPST 91
           VLQRSKNPAGQEGSGAGHF QLPKT PST
Sbjct: 61 TVLQRSKNPAGQEGSGAGHFSQLPKTAPST 89

The following BLAST results are available for this feature:

BLAST of Clc03G13930 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66547.1	3.9e-30	86.67	hypothetical protein Csa_007065 [Cucumis sativus]	[more]
KAG6590166.1	6.1e-23	73.91	hypothetical protein SDJN03_15589, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6588222.1	4.8e-20	72.53	hypothetical protein SDJN03_16787, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Clc03G13930 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc03G13930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0A1	1.9e-30	86.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629040 PE=4 SV=1	[more]

BLAST of Clc03G13930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G13930.1	Clc03G13930.1	mRNA