Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAGCCACACAAATAACAACCAAACACTGGCCCAGAAACAAGGAGTAATCATCACTGTCTACGTTGAATCTCCAAAATTACAAAACAATAACTCCAATAAAACCTCCATTATTCCCCACAACAACATCAATCCAAACGCTACCCTTCCCCAAACCCACAATTCCAAAGGCTACGATCGTCGGGCTCAGCTTCTCGCCTACTCTCGCCACCTCAGAAATGTCGATTCCTCTCTCTCCCAATCGCCCGAACCCAAATCCAAGGCAACTTTTTCCTTTACTCTTTTGTTCTTTTTTGTCTTGTGATTAGTGAAATTTTAGAATGAAAGAAAAAAATTGAATCGTCTGTTGCTTGCTGACAGAAATGGAAATGGAAGCTCCGATCGGAGGCACCGGGGGTGCGGCGGCTGCCGTCGAGACGGGCACTGCACCGGTGGAAATATGAACGTGTTGGGATGATGAGAGAAGAGAGAAGAGAGGTGGTGGATCAGCCATGTCGGCCCAAGTGCTTGGGTGGAAGAAGCAACAAGAAAAGCACTGGCAAATCGAGTTCTTCCACATTTGTAAAATTCTAATTGCATTCAATATGATTCTATATGAATACCCATTTGAACCTTTTTAATTACATATTCTTTGTTAGTATGGTGATTAATGTGTGTTCTGTTTTCAGAGGAAATTGAAGAGTTTGTTGGGAGAATTATCAAAGGGCTGCAAACACTAG
mRNA sequence
ATGCAAAGCCACACAAATAACAACCAAACACTGGCCCAGAAACAAGGAGTAATCATCACTGTCTACGTTGAATCTCCAAAATTACAAAACAATAACTCCAATAAAACCTCCATTATTCCCCACAACAACATCAATCCAAACGCTACCCTTCCCCAAACCCACAATTCCAAAGGCTACGATCGTCGGGCTCAGCTTCTCGCCTACTCTCGCCACCTCAGAAATGTCGATTCCTCTCTCTCCCAATCGCCCGAACCCAAATCCAAGGCAACTTTTTCCTTTACTCTTTTGTTCTTTTTTCTCCGATCGGAGGCACCGGGGGTGCGGCGGCTGCCGTCGAGACGGGCACTGCACCGGTGGAAATATGAACGTGTTGGGATGATGAGAGAAGAGAGAAGAGAGGTGGTGGATCAGCCATGTCGGCCCAAGTGCTTGGGTGGAAGAAGCAACAAGAAAAGCACTGGCAAATCGAGTTCTTCCACATTTAGGAAATTGAAGAGTTTGTTGGGAGAATTATCAAAGGGCTGCAAACACTAG
Coding sequence (CDS)
ATGCAAAGCCACACAAATAACAACCAAACACTGGCCCAGAAACAAGGAGTAATCATCACTGTCTACGTTGAATCTCCAAAATTACAAAACAATAACTCCAATAAAACCTCCATTATTCCCCACAACAACATCAATCCAAACGCTACCCTTCCCCAAACCCACAATTCCAAAGGCTACGATCGTCGGGCTCAGCTTCTCGCCTACTCTCGCCACCTCAGAAATGTCGATTCCTCTCTCTCCCAATCGCCCGAACCCAAATCCAAGGCAACTTTTTCCTTTACTCTTTTGTTCTTTTTTCTCCGATCGGAGGCACCGGGGGTGCGGCGGCTGCCGTCGAGACGGGCACTGCACCGGTGGAAATATGAACGTGTTGGGATGATGAGAGAAGAGAGAAGAGAGGTGGTGGATCAGCCATGTCGGCCCAAGTGCTTGGGTGGAAGAAGCAACAAGAAAAGCACTGGCAAATCGAGTTCTTCCACATTTAGGAAATTGAAGAGTTTGTTGGGAGAATTATCAAAGGGCTGCAAACACTAG
Protein sequence
MQSHTNNNQTLAQKQGVIITVYVESPKLQNNNSNKTSIIPHNNINPNATLPQTHNSKGYDRRAQLLAYSRHLRNVDSSLSQSPEPKSKATFSFTLLFFFLRSEAPGVRRLPSRRALHRWKYERVGMMREERREVVDQPCRPKCLGGRSNKKSTGKSSSSTFRKLKSLLGELSKGCKH
Homology
BLAST of Clc03G09620 vs. NCBI nr
Match:
XP_008460454.1 (PREDICTED: uncharacterized protein LOC103499268 [Cucumis melo])
HSP 1 Score: 253.8 bits (647), Expect = 1.1e-63
Identity = 138/179 (77.09%), Postives = 150/179 (83.80%), Query Frame = 0
Query: 1 MQSHTNNNQTLAQKQGVIITVYVESPKLQNNNSNKTSIIPHNN---INPNATLPQTHNSK 60
MQSHTNN QTL +KQ VIITVYVESPKLQN+NS+KT IIPHNN INP +LP+T NS
Sbjct: 43 MQSHTNNYQTLPKKQEVIITVYVESPKLQNSNSHKTQIIPHNNNNHINPKPSLPKTPNST 102
Query: 61 GYDRRAQLLAYSRHLRNVDSSLSQSPEPKSKATFSFTLLFFFLRSEAPGVRRLPSRRALH 120
GYDRRAQLLAYSRHLRNV SS +QSP+PKSK + +RSEAP VRR+PSRRAL
Sbjct: 103 GYDRRAQLLAYSRHLRNVHSSNTQSPQPKSKK------WKWKVRSEAPTVRRMPSRRALQ 162
Query: 121 RWKYERVGMMREERREVVDQPCRPKCLGGRSNKKSTGKSSSSTFRKLKSLLGELSKGCK 177
RW+YERVGMMREER EVVDQPCRPKCLGGRSNKKST +S SS FRKLKSLLGELSKGCK
Sbjct: 163 RWRYERVGMMREERTEVVDQPCRPKCLGGRSNKKSTSRSGSSIFRKLKSLLGELSKGCK 215
BLAST of Clc03G09620 vs. NCBI nr
Match:
XP_038874461.1 (uncharacterized protein LOC120067113 [Benincasa hispida])
HSP 1 Score: 246.5 bits (628), Expect = 1.7e-61
Identity = 133/177 (75.14%), Postives = 148/177 (83.62%), Query Frame = 0
Query: 1 MQSHTNNNQTLAQKQGVIITVYVESPKLQNNNSNKTSIIPHNNI-NPNATLPQTHNSKGY 60
MQ+HTNNNQT+ QKQGVIITVYVESPKLQ+NNS+K IIPHNNI NPN+ LP+T NS GY
Sbjct: 57 MQTHTNNNQTIPQKQGVIITVYVESPKLQDNNSHKPPIIPHNNINNPNSALPKTPNSTGY 116
Query: 61 DRRAQLLAYSRHLRNVDSSLSQSPEPKSKATFSFTLLFFFLRSEAPGVRRLPSRRALHRW 120
DRRAQLLAYSRHLRN +SSLSQS + +SK + +RSEAP VRR+PSRRAL RW
Sbjct: 117 DRRAQLLAYSRHLRNQNSSLSQSSKTESKK------WKWRVRSEAPAVRRMPSRRALQRW 176
Query: 121 KYERVGMMREERREVVDQPCRPKCLGGRSNKKSTGKSSSSTFRKLKSLLGELSKGCK 177
+YERVGMMREE EVVDQPCRPKC GG+S+KKST KS SS FRKLKSLLGELS GCK
Sbjct: 177 RYERVGMMREETTEVVDQPCRPKCFGGKSSKKSTVKSGSSIFRKLKSLLGELSNGCK 227
BLAST of Clc03G09620 vs. NCBI nr
Match:
XP_004140323.1 (uncharacterized protein LOC101218772 [Cucumis sativus] >KGN50983.1 hypothetical protein Csa_008362 [Cucumis sativus])
HSP 1 Score: 245.0 bits (624), Expect = 5.0e-61
Identity = 134/179 (74.86%), Postives = 147/179 (82.12%), Query Frame = 0
Query: 1 MQSHTNNNQTLAQKQGVIITVYVESPKLQNNNSNKTSIIPH---NNINPNATLPQTHNSK 60
MQSHTNN QTL +KQ VIITVYVESPKLQN+N +KT I+PH NN NP +L +T NS
Sbjct: 6 MQSHTNNYQTLPKKQEVIITVYVESPKLQNSNPHKTPIVPHNNNNNSNPKPSLRKTPNST 65
Query: 61 GYDRRAQLLAYSRHLRNVDSSLSQSPEPKSKATFSFTLLFFFLRSEAPGVRRLPSRRALH 120
GYDRRAQLLAYSRHLRNV SS +QSP+PKSK + +RSEAP VRR+PSRRAL
Sbjct: 66 GYDRRAQLLAYSRHLRNVHSSNTQSPKPKSKK------WKWKVRSEAPTVRRMPSRRALQ 125
Query: 121 RWKYERVGMMREERREVVDQPCRPKCLGGRSNKKSTGKSSSSTFRKLKSLLGELSKGCK 177
RW+YERVGMMREER EVVDQPCRPKCLGGRSNKKST +S SS FRKLKSLLGELSKGCK
Sbjct: 126 RWRYERVGMMREERTEVVDQPCRPKCLGGRSNKKSTSRSGSSIFRKLKSLLGELSKGCK 178
BLAST of Clc03G09620 vs. NCBI nr
Match:
XP_022990178.1 (uncharacterized protein LOC111487148 [Cucurbita maxima])
HSP 1 Score: 161.4 bits (407), Expect = 7.2e-36
Identity = 95/178 (53.37%), Postives = 123/178 (69.10%), Query Frame = 0
Query: 1 MQSHTNNNQ--TLAQKQGVIITVYVESPKLQNNNSNKTSIIPHNNINPNATLPQTHNSKG 60
M+ TN N+ + K+ VIITVYVESP+ Q+N S++ I + N +PNA P+ S+G
Sbjct: 1 MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAP-PKATKSRG 60
Query: 61 YDRRAQLLAYSRHLRNVDSSLSQSPEPKSKATFSFTLLFFFLRSEAPGVRRLPSRRALHR 120
YDRRA+LLAYSR LRNVDS+ + P+ KSK + ++SE VRR+PSRR L +
Sbjct: 61 YDRRAELLAYSRELRNVDSATTHLPKTKSK---------WRVKSETAAVRRIPSRRGLRQ 120
Query: 121 WKYERVGMMREERREVVDQPCRPKCLGGRSNKKSTGKSSSSTFRKLKSLLGELSKGCK 177
+YERVGMMREER EVV+Q C PKC G +K+S+G+ SS RKLKSL+G LSKGCK
Sbjct: 121 GRYERVGMMREERTEVVEQRCLPKCFNG-DDKRSSGRLGSSILRKLKSLMGGLSKGCK 167
BLAST of Clc03G09620 vs. NCBI nr
Match:
XP_022962296.1 (uncharacterized protein LOC111462789 [Cucurbita moschata])
HSP 1 Score: 158.3 bits (399), Expect = 6.1e-35
Identity = 95/178 (53.37%), Postives = 121/178 (67.98%), Query Frame = 0
Query: 1 MQSHTNNNQ--TLAQKQGVIITVYVESPKLQNNNSNKTSIIPHNNINPNATLPQTHNSKG 60
M+ TN N+ + K+ VIITVYVESP+ Q+N S++ I + N +PNA P+ S+G
Sbjct: 1 MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAH-PKAPKSRG 60
Query: 61 YDRRAQLLAYSRHLRNVDSSLSQSPEPKSKATFSFTLLFFFLRSEAPGVRRLPSRRALHR 120
YDRRA+LLAYSR LRNVDS+ + P+ KSK + ++SE VRRLPSRR L +
Sbjct: 61 YDRRAELLAYSRELRNVDSATTHLPKTKSK---------WRVKSETAAVRRLPSRRGLRQ 120
Query: 121 WKYERVGMMREERREVVDQPCRPKCLGGRSNKKSTGKSSSSTFRKLKSLLGELSKGCK 177
+YERVGMMREER EVV+Q C PKC G K+S+G+ SS RKLKSL+G LS GCK
Sbjct: 121 GRYERVGMMREERTEVVEQRCLPKCFNG-DYKRSSGRLGSSILRKLKSLMGGLSMGCK 167
BLAST of Clc03G09620 vs. ExPASy TrEMBL
Match:
A0A1S3CDS3 (uncharacterized protein LOC103499268 OS=Cucumis melo OX=3656 GN=LOC103499268 PE=4 SV=1)
HSP 1 Score: 253.8 bits (647), Expect = 5.2e-64
Identity = 138/179 (77.09%), Postives = 150/179 (83.80%), Query Frame = 0
Query: 1 MQSHTNNNQTLAQKQGVIITVYVESPKLQNNNSNKTSIIPHNN---INPNATLPQTHNSK 60
MQSHTNN QTL +KQ VIITVYVESPKLQN+NS+KT IIPHNN INP +LP+T NS
Sbjct: 43 MQSHTNNYQTLPKKQEVIITVYVESPKLQNSNSHKTQIIPHNNNNHINPKPSLPKTPNST 102
Query: 61 GYDRRAQLLAYSRHLRNVDSSLSQSPEPKSKATFSFTLLFFFLRSEAPGVRRLPSRRALH 120
GYDRRAQLLAYSRHLRNV SS +QSP+PKSK + +RSEAP VRR+PSRRAL
Sbjct: 103 GYDRRAQLLAYSRHLRNVHSSNTQSPQPKSKK------WKWKVRSEAPTVRRMPSRRALQ 162
Query: 121 RWKYERVGMMREERREVVDQPCRPKCLGGRSNKKSTGKSSSSTFRKLKSLLGELSKGCK 177
RW+YERVGMMREER EVVDQPCRPKCLGGRSNKKST +S SS FRKLKSLLGELSKGCK
Sbjct: 163 RWRYERVGMMREERTEVVDQPCRPKCLGGRSNKKSTSRSGSSIFRKLKSLLGELSKGCK 215
BLAST of Clc03G09620 vs. ExPASy TrEMBL
Match:
A0A0A0KN34 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G385350 PE=4 SV=1)
HSP 1 Score: 245.0 bits (624), Expect = 2.4e-61
Identity = 134/179 (74.86%), Postives = 147/179 (82.12%), Query Frame = 0
Query: 1 MQSHTNNNQTLAQKQGVIITVYVESPKLQNNNSNKTSIIPH---NNINPNATLPQTHNSK 60
MQSHTNN QTL +KQ VIITVYVESPKLQN+N +KT I+PH NN NP +L +T NS
Sbjct: 6 MQSHTNNYQTLPKKQEVIITVYVESPKLQNSNPHKTPIVPHNNNNNSNPKPSLRKTPNST 65
Query: 61 GYDRRAQLLAYSRHLRNVDSSLSQSPEPKSKATFSFTLLFFFLRSEAPGVRRLPSRRALH 120
GYDRRAQLLAYSRHLRNV SS +QSP+PKSK + +RSEAP VRR+PSRRAL
Sbjct: 66 GYDRRAQLLAYSRHLRNVHSSNTQSPKPKSKK------WKWKVRSEAPTVRRMPSRRALQ 125
Query: 121 RWKYERVGMMREERREVVDQPCRPKCLGGRSNKKSTGKSSSSTFRKLKSLLGELSKGCK 177
RW+YERVGMMREER EVVDQPCRPKCLGGRSNKKST +S SS FRKLKSLLGELSKGCK
Sbjct: 126 RWRYERVGMMREERTEVVDQPCRPKCLGGRSNKKSTSRSGSSIFRKLKSLLGELSKGCK 178
BLAST of Clc03G09620 vs. ExPASy TrEMBL
Match:
A0A6J1JSH9 (uncharacterized protein LOC111487148 OS=Cucurbita maxima OX=3661 GN=LOC111487148 PE=4 SV=1)
HSP 1 Score: 161.4 bits (407), Expect = 3.5e-36
Identity = 95/178 (53.37%), Postives = 123/178 (69.10%), Query Frame = 0
Query: 1 MQSHTNNNQ--TLAQKQGVIITVYVESPKLQNNNSNKTSIIPHNNINPNATLPQTHNSKG 60
M+ TN N+ + K+ VIITVYVESP+ Q+N S++ I + N +PNA P+ S+G
Sbjct: 1 MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAP-PKATKSRG 60
Query: 61 YDRRAQLLAYSRHLRNVDSSLSQSPEPKSKATFSFTLLFFFLRSEAPGVRRLPSRRALHR 120
YDRRA+LLAYSR LRNVDS+ + P+ KSK + ++SE VRR+PSRR L +
Sbjct: 61 YDRRAELLAYSRELRNVDSATTHLPKTKSK---------WRVKSETAAVRRIPSRRGLRQ 120
Query: 121 WKYERVGMMREERREVVDQPCRPKCLGGRSNKKSTGKSSSSTFRKLKSLLGELSKGCK 177
+YERVGMMREER EVV+Q C PKC G +K+S+G+ SS RKLKSL+G LSKGCK
Sbjct: 121 GRYERVGMMREERTEVVEQRCLPKCFNG-DDKRSSGRLGSSILRKLKSLMGGLSKGCK 167
BLAST of Clc03G09620 vs. ExPASy TrEMBL
Match:
A0A6J1HCQ4 (uncharacterized protein LOC111462789 OS=Cucurbita moschata OX=3662 GN=LOC111462789 PE=4 SV=1)
HSP 1 Score: 158.3 bits (399), Expect = 3.0e-35
Identity = 95/178 (53.37%), Postives = 121/178 (67.98%), Query Frame = 0
Query: 1 MQSHTNNNQ--TLAQKQGVIITVYVESPKLQNNNSNKTSIIPHNNINPNATLPQTHNSKG 60
M+ TN N+ + K+ VIITVYVESP+ Q+N S++ I + N +PNA P+ S+G
Sbjct: 1 MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAH-PKAPKSRG 60
Query: 61 YDRRAQLLAYSRHLRNVDSSLSQSPEPKSKATFSFTLLFFFLRSEAPGVRRLPSRRALHR 120
YDRRA+LLAYSR LRNVDS+ + P+ KSK + ++SE VRRLPSRR L +
Sbjct: 61 YDRRAELLAYSRELRNVDSATTHLPKTKSK---------WRVKSETAAVRRLPSRRGLRQ 120
Query: 121 WKYERVGMMREERREVVDQPCRPKCLGGRSNKKSTGKSSSSTFRKLKSLLGELSKGCK 177
+YERVGMMREER EVV+Q C PKC G K+S+G+ SS RKLKSL+G LS GCK
Sbjct: 121 GRYERVGMMREERTEVVEQRCLPKCFNG-DYKRSSGRLGSSILRKLKSLMGGLSMGCK 167
BLAST of Clc03G09620 vs. ExPASy TrEMBL
Match:
A0A6J1CJQ0 (uncharacterized protein LOC111011926 OS=Momordica charantia OX=3673 GN=LOC111011926 PE=4 SV=1)
HSP 1 Score: 122.1 bits (305), Expect = 2.3e-24
Identity = 87/178 (48.88%), Postives = 103/178 (57.87%), Query Frame = 0
Query: 1 MQSH-TNNNQTLAQKQGVIITVYVESPKLQNNNSNKTSIIPHNNINPNATLPQTHNSKGY 60
M+ H ++ N+T +K GVIITVYVESPK NN+ N INP + +GY
Sbjct: 53 MEGHKSDTNKTNPRKDGVIITVYVESPKSHNNSHQNRDANALNKINPKS------RGRGY 112
Query: 61 DRRAQLLAYSRHLRNVDSSLSQSPEPKSKATFSFTLLFFFLRSEAPGVRRLPSRRALHRW 120
DRRAQLLAYSR LRN+DS L +PK +RSE
Sbjct: 113 DRRAQLLAYSRDLRNLDSPL----KPKKWK--------LKVRSET--------------- 172
Query: 121 KYERVGMMREERREVVDQPCRPKCLGGRS-NKKSTGKSSSSTFRKLKSLLGELSKGCK 177
+YERVGM RE+R EVVDQ CRPKC +S KK+TGKS SS K+KSLL ELSKGCK
Sbjct: 173 RYERVGMGREDRAEVVDQRCRPKCFCFQSRTKKATGKSGSSILMKMKSLLRELSKGCK 197
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_008460454.1 | 1.1e-63 | 77.09 | PREDICTED: uncharacterized protein LOC103499268 [Cucumis melo] | [more] |
XP_038874461.1 | 1.7e-61 | 75.14 | uncharacterized protein LOC120067113 [Benincasa hispida] | [more] |
XP_004140323.1 | 5.0e-61 | 74.86 | uncharacterized protein LOC101218772 [Cucumis sativus] >KGN50983.1 hypothetical ... | [more] |
XP_022990178.1 | 7.2e-36 | 53.37 | uncharacterized protein LOC111487148 [Cucurbita maxima] | [more] |
XP_022962296.1 | 6.1e-35 | 53.37 | uncharacterized protein LOC111462789 [Cucurbita moschata] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A1S3CDS3 | 5.2e-64 | 77.09 | uncharacterized protein LOC103499268 OS=Cucumis melo OX=3656 GN=LOC103499268 PE=... | [more] |
A0A0A0KN34 | 2.4e-61 | 74.86 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G385350 PE=4 SV=1 | [more] |
A0A6J1JSH9 | 3.5e-36 | 53.37 | uncharacterized protein LOC111487148 OS=Cucurbita maxima OX=3661 GN=LOC111487148... | [more] |
A0A6J1HCQ4 | 3.0e-35 | 53.37 | uncharacterized protein LOC111462789 OS=Cucurbita moschata OX=3662 GN=LOC1114627... | [more] |
A0A6J1CJQ0 | 2.3e-24 | 48.88 | uncharacterized protein LOC111011926 OS=Momordica charantia OX=3673 GN=LOC111011... | [more] |
Match Name | E-value | Identity | Description | |