Clc03G09620 (gene) Watermelon (cordophanus) v2

Overview
NameClc03G09620
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr03: 11537427 .. 11538147 (-)
RNA-Seq ExpressionClc03G09620
SyntenyClc03G09620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAGCCACACAAATAACAACCAAACACTGGCCCAGAAACAAGGAGTAATCATCACTGTCTACGTTGAATCTCCAAAATTACAAAACAATAACTCCAATAAAACCTCCATTATTCCCCACAACAACATCAATCCAAACGCTACCCTTCCCCAAACCCACAATTCCAAAGGCTACGATCGTCGGGCTCAGCTTCTCGCCTACTCTCGCCACCTCAGAAATGTCGATTCCTCTCTCTCCCAATCGCCCGAACCCAAATCCAAGGCAACTTTTTCCTTTACTCTTTTGTTCTTTTTTGTCTTGTGATTAGTGAAATTTTAGAATGAAAGAAAAAAATTGAATCGTCTGTTGCTTGCTGACAGAAATGGAAATGGAAGCTCCGATCGGAGGCACCGGGGGTGCGGCGGCTGCCGTCGAGACGGGCACTGCACCGGTGGAAATATGAACGTGTTGGGATGATGAGAGAAGAGAGAAGAGAGGTGGTGGATCAGCCATGTCGGCCCAAGTGCTTGGGTGGAAGAAGCAACAAGAAAAGCACTGGCAAATCGAGTTCTTCCACATTTGTAAAATTCTAATTGCATTCAATATGATTCTATATGAATACCCATTTGAACCTTTTTAATTACATATTCTTTGTTAGTATGGTGATTAATGTGTGTTCTGTTTTCAGAGGAAATTGAAGAGTTTGTTGGGAGAATTATCAAAGGGCTGCAAACACTAG

mRNA sequence

ATGCAAAGCCACACAAATAACAACCAAACACTGGCCCAGAAACAAGGAGTAATCATCACTGTCTACGTTGAATCTCCAAAATTACAAAACAATAACTCCAATAAAACCTCCATTATTCCCCACAACAACATCAATCCAAACGCTACCCTTCCCCAAACCCACAATTCCAAAGGCTACGATCGTCGGGCTCAGCTTCTCGCCTACTCTCGCCACCTCAGAAATGTCGATTCCTCTCTCTCCCAATCGCCCGAACCCAAATCCAAGGCAACTTTTTCCTTTACTCTTTTGTTCTTTTTTCTCCGATCGGAGGCACCGGGGGTGCGGCGGCTGCCGTCGAGACGGGCACTGCACCGGTGGAAATATGAACGTGTTGGGATGATGAGAGAAGAGAGAAGAGAGGTGGTGGATCAGCCATGTCGGCCCAAGTGCTTGGGTGGAAGAAGCAACAAGAAAAGCACTGGCAAATCGAGTTCTTCCACATTTAGGAAATTGAAGAGTTTGTTGGGAGAATTATCAAAGGGCTGCAAACACTAG

Coding sequence (CDS)

ATGCAAAGCCACACAAATAACAACCAAACACTGGCCCAGAAACAAGGAGTAATCATCACTGTCTACGTTGAATCTCCAAAATTACAAAACAATAACTCCAATAAAACCTCCATTATTCCCCACAACAACATCAATCCAAACGCTACCCTTCCCCAAACCCACAATTCCAAAGGCTACGATCGTCGGGCTCAGCTTCTCGCCTACTCTCGCCACCTCAGAAATGTCGATTCCTCTCTCTCCCAATCGCCCGAACCCAAATCCAAGGCAACTTTTTCCTTTACTCTTTTGTTCTTTTTTCTCCGATCGGAGGCACCGGGGGTGCGGCGGCTGCCGTCGAGACGGGCACTGCACCGGTGGAAATATGAACGTGTTGGGATGATGAGAGAAGAGAGAAGAGAGGTGGTGGATCAGCCATGTCGGCCCAAGTGCTTGGGTGGAAGAAGCAACAAGAAAAGCACTGGCAAATCGAGTTCTTCCACATTTAGGAAATTGAAGAGTTTGTTGGGAGAATTATCAAAGGGCTGCAAACACTAG

Protein sequence

MQSHTNNNQTLAQKQGVIITVYVESPKLQNNNSNKTSIIPHNNINPNATLPQTHNSKGYDRRAQLLAYSRHLRNVDSSLSQSPEPKSKATFSFTLLFFFLRSEAPGVRRLPSRRALHRWKYERVGMMREERREVVDQPCRPKCLGGRSNKKSTGKSSSSTFRKLKSLLGELSKGCKH
Homology
BLAST of Clc03G09620 vs. NCBI nr
Match: XP_008460454.1 (PREDICTED: uncharacterized protein LOC103499268 [Cucumis melo])

HSP 1 Score: 253.8 bits (647), Expect = 1.1e-63
Identity = 138/179 (77.09%), Postives = 150/179 (83.80%), Query Frame = 0

Query: 1   MQSHTNNNQTLAQKQGVIITVYVESPKLQNNNSNKTSIIPHNN---INPNATLPQTHNSK 60
           MQSHTNN QTL +KQ VIITVYVESPKLQN+NS+KT IIPHNN   INP  +LP+T NS 
Sbjct: 43  MQSHTNNYQTLPKKQEVIITVYVESPKLQNSNSHKTQIIPHNNNNHINPKPSLPKTPNST 102

Query: 61  GYDRRAQLLAYSRHLRNVDSSLSQSPEPKSKATFSFTLLFFFLRSEAPGVRRLPSRRALH 120
           GYDRRAQLLAYSRHLRNV SS +QSP+PKSK         + +RSEAP VRR+PSRRAL 
Sbjct: 103 GYDRRAQLLAYSRHLRNVHSSNTQSPQPKSKK------WKWKVRSEAPTVRRMPSRRALQ 162

Query: 121 RWKYERVGMMREERREVVDQPCRPKCLGGRSNKKSTGKSSSSTFRKLKSLLGELSKGCK 177
           RW+YERVGMMREER EVVDQPCRPKCLGGRSNKKST +S SS FRKLKSLLGELSKGCK
Sbjct: 163 RWRYERVGMMREERTEVVDQPCRPKCLGGRSNKKSTSRSGSSIFRKLKSLLGELSKGCK 215

BLAST of Clc03G09620 vs. NCBI nr
Match: XP_038874461.1 (uncharacterized protein LOC120067113 [Benincasa hispida])

HSP 1 Score: 246.5 bits (628), Expect = 1.7e-61
Identity = 133/177 (75.14%), Postives = 148/177 (83.62%), Query Frame = 0

Query: 1   MQSHTNNNQTLAQKQGVIITVYVESPKLQNNNSNKTSIIPHNNI-NPNATLPQTHNSKGY 60
           MQ+HTNNNQT+ QKQGVIITVYVESPKLQ+NNS+K  IIPHNNI NPN+ LP+T NS GY
Sbjct: 57  MQTHTNNNQTIPQKQGVIITVYVESPKLQDNNSHKPPIIPHNNINNPNSALPKTPNSTGY 116

Query: 61  DRRAQLLAYSRHLRNVDSSLSQSPEPKSKATFSFTLLFFFLRSEAPGVRRLPSRRALHRW 120
           DRRAQLLAYSRHLRN +SSLSQS + +SK         + +RSEAP VRR+PSRRAL RW
Sbjct: 117 DRRAQLLAYSRHLRNQNSSLSQSSKTESKK------WKWRVRSEAPAVRRMPSRRALQRW 176

Query: 121 KYERVGMMREERREVVDQPCRPKCLGGRSNKKSTGKSSSSTFRKLKSLLGELSKGCK 177
           +YERVGMMREE  EVVDQPCRPKC GG+S+KKST KS SS FRKLKSLLGELS GCK
Sbjct: 177 RYERVGMMREETTEVVDQPCRPKCFGGKSSKKSTVKSGSSIFRKLKSLLGELSNGCK 227

BLAST of Clc03G09620 vs. NCBI nr
Match: XP_004140323.1 (uncharacterized protein LOC101218772 [Cucumis sativus] >KGN50983.1 hypothetical protein Csa_008362 [Cucumis sativus])

HSP 1 Score: 245.0 bits (624), Expect = 5.0e-61
Identity = 134/179 (74.86%), Postives = 147/179 (82.12%), Query Frame = 0

Query: 1   MQSHTNNNQTLAQKQGVIITVYVESPKLQNNNSNKTSIIPH---NNINPNATLPQTHNSK 60
           MQSHTNN QTL +KQ VIITVYVESPKLQN+N +KT I+PH   NN NP  +L +T NS 
Sbjct: 6   MQSHTNNYQTLPKKQEVIITVYVESPKLQNSNPHKTPIVPHNNNNNSNPKPSLRKTPNST 65

Query: 61  GYDRRAQLLAYSRHLRNVDSSLSQSPEPKSKATFSFTLLFFFLRSEAPGVRRLPSRRALH 120
           GYDRRAQLLAYSRHLRNV SS +QSP+PKSK         + +RSEAP VRR+PSRRAL 
Sbjct: 66  GYDRRAQLLAYSRHLRNVHSSNTQSPKPKSKK------WKWKVRSEAPTVRRMPSRRALQ 125

Query: 121 RWKYERVGMMREERREVVDQPCRPKCLGGRSNKKSTGKSSSSTFRKLKSLLGELSKGCK 177
           RW+YERVGMMREER EVVDQPCRPKCLGGRSNKKST +S SS FRKLKSLLGELSKGCK
Sbjct: 126 RWRYERVGMMREERTEVVDQPCRPKCLGGRSNKKSTSRSGSSIFRKLKSLLGELSKGCK 178

BLAST of Clc03G09620 vs. NCBI nr
Match: XP_022990178.1 (uncharacterized protein LOC111487148 [Cucurbita maxima])

HSP 1 Score: 161.4 bits (407), Expect = 7.2e-36
Identity = 95/178 (53.37%), Postives = 123/178 (69.10%), Query Frame = 0

Query: 1   MQSHTNNNQ--TLAQKQGVIITVYVESPKLQNNNSNKTSIIPHNNINPNATLPQTHNSKG 60
           M+  TN N+   +  K+ VIITVYVESP+ Q+N S++  I  + N +PNA  P+   S+G
Sbjct: 1   MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAP-PKATKSRG 60

Query: 61  YDRRAQLLAYSRHLRNVDSSLSQSPEPKSKATFSFTLLFFFLRSEAPGVRRLPSRRALHR 120
           YDRRA+LLAYSR LRNVDS+ +  P+ KSK         + ++SE   VRR+PSRR L +
Sbjct: 61  YDRRAELLAYSRELRNVDSATTHLPKTKSK---------WRVKSETAAVRRIPSRRGLRQ 120

Query: 121 WKYERVGMMREERREVVDQPCRPKCLGGRSNKKSTGKSSSSTFRKLKSLLGELSKGCK 177
            +YERVGMMREER EVV+Q C PKC  G  +K+S+G+  SS  RKLKSL+G LSKGCK
Sbjct: 121 GRYERVGMMREERTEVVEQRCLPKCFNG-DDKRSSGRLGSSILRKLKSLMGGLSKGCK 167

BLAST of Clc03G09620 vs. NCBI nr
Match: XP_022962296.1 (uncharacterized protein LOC111462789 [Cucurbita moschata])

HSP 1 Score: 158.3 bits (399), Expect = 6.1e-35
Identity = 95/178 (53.37%), Postives = 121/178 (67.98%), Query Frame = 0

Query: 1   MQSHTNNNQ--TLAQKQGVIITVYVESPKLQNNNSNKTSIIPHNNINPNATLPQTHNSKG 60
           M+  TN N+   +  K+ VIITVYVESP+ Q+N S++  I  + N +PNA  P+   S+G
Sbjct: 1   MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAH-PKAPKSRG 60

Query: 61  YDRRAQLLAYSRHLRNVDSSLSQSPEPKSKATFSFTLLFFFLRSEAPGVRRLPSRRALHR 120
           YDRRA+LLAYSR LRNVDS+ +  P+ KSK         + ++SE   VRRLPSRR L +
Sbjct: 61  YDRRAELLAYSRELRNVDSATTHLPKTKSK---------WRVKSETAAVRRLPSRRGLRQ 120

Query: 121 WKYERVGMMREERREVVDQPCRPKCLGGRSNKKSTGKSSSSTFRKLKSLLGELSKGCK 177
            +YERVGMMREER EVV+Q C PKC  G   K+S+G+  SS  RKLKSL+G LS GCK
Sbjct: 121 GRYERVGMMREERTEVVEQRCLPKCFNG-DYKRSSGRLGSSILRKLKSLMGGLSMGCK 167

BLAST of Clc03G09620 vs. ExPASy TrEMBL
Match: A0A1S3CDS3 (uncharacterized protein LOC103499268 OS=Cucumis melo OX=3656 GN=LOC103499268 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 5.2e-64
Identity = 138/179 (77.09%), Postives = 150/179 (83.80%), Query Frame = 0

Query: 1   MQSHTNNNQTLAQKQGVIITVYVESPKLQNNNSNKTSIIPHNN---INPNATLPQTHNSK 60
           MQSHTNN QTL +KQ VIITVYVESPKLQN+NS+KT IIPHNN   INP  +LP+T NS 
Sbjct: 43  MQSHTNNYQTLPKKQEVIITVYVESPKLQNSNSHKTQIIPHNNNNHINPKPSLPKTPNST 102

Query: 61  GYDRRAQLLAYSRHLRNVDSSLSQSPEPKSKATFSFTLLFFFLRSEAPGVRRLPSRRALH 120
           GYDRRAQLLAYSRHLRNV SS +QSP+PKSK         + +RSEAP VRR+PSRRAL 
Sbjct: 103 GYDRRAQLLAYSRHLRNVHSSNTQSPQPKSKK------WKWKVRSEAPTVRRMPSRRALQ 162

Query: 121 RWKYERVGMMREERREVVDQPCRPKCLGGRSNKKSTGKSSSSTFRKLKSLLGELSKGCK 177
           RW+YERVGMMREER EVVDQPCRPKCLGGRSNKKST +S SS FRKLKSLLGELSKGCK
Sbjct: 163 RWRYERVGMMREERTEVVDQPCRPKCLGGRSNKKSTSRSGSSIFRKLKSLLGELSKGCK 215

BLAST of Clc03G09620 vs. ExPASy TrEMBL
Match: A0A0A0KN34 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G385350 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 2.4e-61
Identity = 134/179 (74.86%), Postives = 147/179 (82.12%), Query Frame = 0

Query: 1   MQSHTNNNQTLAQKQGVIITVYVESPKLQNNNSNKTSIIPH---NNINPNATLPQTHNSK 60
           MQSHTNN QTL +KQ VIITVYVESPKLQN+N +KT I+PH   NN NP  +L +T NS 
Sbjct: 6   MQSHTNNYQTLPKKQEVIITVYVESPKLQNSNPHKTPIVPHNNNNNSNPKPSLRKTPNST 65

Query: 61  GYDRRAQLLAYSRHLRNVDSSLSQSPEPKSKATFSFTLLFFFLRSEAPGVRRLPSRRALH 120
           GYDRRAQLLAYSRHLRNV SS +QSP+PKSK         + +RSEAP VRR+PSRRAL 
Sbjct: 66  GYDRRAQLLAYSRHLRNVHSSNTQSPKPKSKK------WKWKVRSEAPTVRRMPSRRALQ 125

Query: 121 RWKYERVGMMREERREVVDQPCRPKCLGGRSNKKSTGKSSSSTFRKLKSLLGELSKGCK 177
           RW+YERVGMMREER EVVDQPCRPKCLGGRSNKKST +S SS FRKLKSLLGELSKGCK
Sbjct: 126 RWRYERVGMMREERTEVVDQPCRPKCLGGRSNKKSTSRSGSSIFRKLKSLLGELSKGCK 178

BLAST of Clc03G09620 vs. ExPASy TrEMBL
Match: A0A6J1JSH9 (uncharacterized protein LOC111487148 OS=Cucurbita maxima OX=3661 GN=LOC111487148 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 3.5e-36
Identity = 95/178 (53.37%), Postives = 123/178 (69.10%), Query Frame = 0

Query: 1   MQSHTNNNQ--TLAQKQGVIITVYVESPKLQNNNSNKTSIIPHNNINPNATLPQTHNSKG 60
           M+  TN N+   +  K+ VIITVYVESP+ Q+N S++  I  + N +PNA  P+   S+G
Sbjct: 1   MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAP-PKATKSRG 60

Query: 61  YDRRAQLLAYSRHLRNVDSSLSQSPEPKSKATFSFTLLFFFLRSEAPGVRRLPSRRALHR 120
           YDRRA+LLAYSR LRNVDS+ +  P+ KSK         + ++SE   VRR+PSRR L +
Sbjct: 61  YDRRAELLAYSRELRNVDSATTHLPKTKSK---------WRVKSETAAVRRIPSRRGLRQ 120

Query: 121 WKYERVGMMREERREVVDQPCRPKCLGGRSNKKSTGKSSSSTFRKLKSLLGELSKGCK 177
            +YERVGMMREER EVV+Q C PKC  G  +K+S+G+  SS  RKLKSL+G LSKGCK
Sbjct: 121 GRYERVGMMREERTEVVEQRCLPKCFNG-DDKRSSGRLGSSILRKLKSLMGGLSKGCK 167

BLAST of Clc03G09620 vs. ExPASy TrEMBL
Match: A0A6J1HCQ4 (uncharacterized protein LOC111462789 OS=Cucurbita moschata OX=3662 GN=LOC111462789 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 3.0e-35
Identity = 95/178 (53.37%), Postives = 121/178 (67.98%), Query Frame = 0

Query: 1   MQSHTNNNQ--TLAQKQGVIITVYVESPKLQNNNSNKTSIIPHNNINPNATLPQTHNSKG 60
           M+  TN N+   +  K+ VIITVYVESP+ Q+N S++  I  + N +PNA  P+   S+G
Sbjct: 1   MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAH-PKAPKSRG 60

Query: 61  YDRRAQLLAYSRHLRNVDSSLSQSPEPKSKATFSFTLLFFFLRSEAPGVRRLPSRRALHR 120
           YDRRA+LLAYSR LRNVDS+ +  P+ KSK         + ++SE   VRRLPSRR L +
Sbjct: 61  YDRRAELLAYSRELRNVDSATTHLPKTKSK---------WRVKSETAAVRRLPSRRGLRQ 120

Query: 121 WKYERVGMMREERREVVDQPCRPKCLGGRSNKKSTGKSSSSTFRKLKSLLGELSKGCK 177
            +YERVGMMREER EVV+Q C PKC  G   K+S+G+  SS  RKLKSL+G LS GCK
Sbjct: 121 GRYERVGMMREERTEVVEQRCLPKCFNG-DYKRSSGRLGSSILRKLKSLMGGLSMGCK 167

BLAST of Clc03G09620 vs. ExPASy TrEMBL
Match: A0A6J1CJQ0 (uncharacterized protein LOC111011926 OS=Momordica charantia OX=3673 GN=LOC111011926 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.3e-24
Identity = 87/178 (48.88%), Postives = 103/178 (57.87%), Query Frame = 0

Query: 1   MQSH-TNNNQTLAQKQGVIITVYVESPKLQNNNSNKTSIIPHNNINPNATLPQTHNSKGY 60
           M+ H ++ N+T  +K GVIITVYVESPK  NN+         N INP +        +GY
Sbjct: 53  MEGHKSDTNKTNPRKDGVIITVYVESPKSHNNSHQNRDANALNKINPKS------RGRGY 112

Query: 61  DRRAQLLAYSRHLRNVDSSLSQSPEPKSKATFSFTLLFFFLRSEAPGVRRLPSRRALHRW 120
           DRRAQLLAYSR LRN+DS L    +PK             +RSE                
Sbjct: 113 DRRAQLLAYSRDLRNLDSPL----KPKKWK--------LKVRSET--------------- 172

Query: 121 KYERVGMMREERREVVDQPCRPKCLGGRS-NKKSTGKSSSSTFRKLKSLLGELSKGCK 177
           +YERVGM RE+R EVVDQ CRPKC   +S  KK+TGKS SS   K+KSLL ELSKGCK
Sbjct: 173 RYERVGMGREDRAEVVDQRCRPKCFCFQSRTKKATGKSGSSILMKMKSLLRELSKGCK 197

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008460454.11.1e-6377.09PREDICTED: uncharacterized protein LOC103499268 [Cucumis melo][more]
XP_038874461.11.7e-6175.14uncharacterized protein LOC120067113 [Benincasa hispida][more]
XP_004140323.15.0e-6174.86uncharacterized protein LOC101218772 [Cucumis sativus] >KGN50983.1 hypothetical ... [more]
XP_022990178.17.2e-3653.37uncharacterized protein LOC111487148 [Cucurbita maxima][more]
XP_022962296.16.1e-3553.37uncharacterized protein LOC111462789 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3CDS35.2e-6477.09uncharacterized protein LOC103499268 OS=Cucumis melo OX=3656 GN=LOC103499268 PE=... [more]
A0A0A0KN342.4e-6174.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G385350 PE=4 SV=1[more]
A0A6J1JSH93.5e-3653.37uncharacterized protein LOC111487148 OS=Cucurbita maxima OX=3661 GN=LOC111487148... [more]
A0A6J1HCQ43.0e-3553.37uncharacterized protein LOC111462789 OS=Cucurbita moschata OX=3662 GN=LOC1114627... [more]
A0A6J1CJQ02.3e-2448.88uncharacterized protein LOC111011926 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 139..161
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..57

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc03G09620.2Clc03G09620.2mRNA