Clc03G07940 (gene) Watermelon (cordophanus) v2

Overview
NameClc03G07940
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr03: 8176484 .. 8177229 (+)
RNA-Seq ExpressionClc03G07940
SyntenyClc03G07940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCCAAGAAAGCAAGATGATAAAGGAGAGGCCATTAACCGACCCAAGGCCTTAGAAGCCTCGAGAGGCAGATCCTATGGGTCAGCCACGGAGCACGTAAGAGTATGAGTAAGTCGACCCAATCTCTAATAAGATGGTGATACTTAACATAACAAAGAGGTTGGTGGCGCTTTATTCCATAGCACGCTACAGAAAGTGGGCCCCACATTCCTTAGAAACATGTAATAATTGTCGTTTTGCACGTTTTATTTCGACCGTTAGAACGACTTTCCGTTTATTTTGACGGAATTACAAAACGGTCGGTCATAAAGTCCATAGTTTCACGGCACAAAAGAAAACAGACTCTCGAATGTACCATAGTACCCTCAGAACAGTAAGTCCCCATTTCAGTAAAACCGAATGGTATTTTGATCATTTAACATTCCTCCATCTAAAACTTCGTTATTAAAACTCCTTTGAGTTTTTGGGCGTCGAATTCTACAATGGAAGGCCAGCAGGTTTTAGAGAATTTGGATTCTCTCTGGTTCTTCGCCACCGTATTCTCCAACAGAGCGCCGCCATTGCCGTCTCCACCGCCACCGCCCGTCGAAAAACCCACTCAAAACGGCTTCGTTGAGCCTCCTGCAGAAGAAATTGCGACACCCATTACTCAAATTGAGCAAAATGATGTTGGTGATGAGAAGAAGATTGAAAATGGTGGCGGGGTTGGGATAAAAACAGAGGAGAAAGAACAGAGGAAGTAG

mRNA sequence

ATGACTCCAAGAAAGCAAGATGATAAAGGAGAGGCCATTAACCGACCCAAGGCCTTAGAAGCCTCGAGAGGCAGATCCTATGGGTCAGCCACGGAGCACGTTTTAGAGAATTTGGATTCTCTCTGGTTCTTCGCCACCGTATTCTCCAACAGAGCGCCGCCATTGCCGTCTCCACCGCCACCGCCCGTCGAAAAACCCACTCAAAACGGCTTCGTTGAGCCTCCTGCAGAAGAAATTGCGACACCCATTACTCAAATTGAGCAAAATGATGTTGGTGATGAGAAGAAGATTGAAAATGGTGGCGGGGTTGGGATAAAAACAGAGGAGAAAGAACAGAGGAAGTAG

Coding sequence (CDS)

ATGACTCCAAGAAAGCAAGATGATAAAGGAGAGGCCATTAACCGACCCAAGGCCTTAGAAGCCTCGAGAGGCAGATCCTATGGGTCAGCCACGGAGCACGTTTTAGAGAATTTGGATTCTCTCTGGTTCTTCGCCACCGTATTCTCCAACAGAGCGCCGCCATTGCCGTCTCCACCGCCACCGCCCGTCGAAAAACCCACTCAAAACGGCTTCGTTGAGCCTCCTGCAGAAGAAATTGCGACACCCATTACTCAAATTGAGCAAAATGATGTTGGTGATGAGAAGAAGATTGAAAATGGTGGCGGGGTTGGGATAAAAACAGAGGAGAAAGAACAGAGGAAGTAG

Protein sequence

MTPRKQDDKGEAINRPKALEASRGRSYGSATEHVLENLDSLWFFATVFSNRAPPLPSPPPPPVEKPTQNGFVEPPAEEIATPITQIEQNDVGDEKKIENGGGVGIKTEEKEQRK
Homology
BLAST of Clc03G07940 vs. NCBI nr
Match: XP_038895160.1 (uncharacterized protein LOC120083464 [Benincasa hispida])

HSP 1 Score: 127.5 bits (319), Expect = 7.4e-26
Identity = 66/83 (79.52%), Postives = 70/83 (84.34%), Query Frame = 0

Query: 32  EHVLENLDSLWFFATVFSNRAPPLPSPPPPPVEKPTQNGFVEPPAEEIATPITQIEQNDV 91
           + VLEN DSLWFFATVFSNR P  P PPPP VE PTQN FVEPP EEIATP+T  EQN+V
Sbjct: 4   QQVLENWDSLWFFATVFSNRTP--PPPPPPVVENPTQNDFVEPPGEEIATPLTPNEQNNV 63

Query: 92  GDEKKIENGGGVGIKTEEKEQRK 115
           GDEKKIENGGG GIKTEEKEQR+
Sbjct: 64  GDEKKIENGGGFGIKTEEKEQRR 84

BLAST of Clc03G07940 vs. NCBI nr
Match: XP_023520136.1 (uncharacterized protein LOC111783440 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-17
Identity = 57/90 (63.33%), Postives = 67/90 (74.44%), Query Frame = 0

Query: 32  EHVLENLDSLWFFATVFSNRAPPLPSPPPPP-VEKPTQNGFVEPPAEEIATPITQIEQN- 91
           + VL+NLDSLWFFATVFSNR PP P PPPPP V+KPTQN FVEPP  EIATPI Q +QN 
Sbjct: 4   QQVLQNLDSLWFFATVFSNRTPPPPPPPPPPVVQKPTQNDFVEPPGGEIATPIFQNQQNV 63

Query: 92  ----DVGDEKKIENGGGVG-IKTEEKEQRK 115
               ++ DEK  E GGG+G I TEE+ + +
Sbjct: 64  GEERNIVDEKTNETGGGLGLIITEERRKSR 93

BLAST of Clc03G07940 vs. NCBI nr
Match: KAG6583945.1 (hypothetical protein SDJN03_19877, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.7 bits (234), Expect = 5.3e-16
Identity = 55/89 (61.80%), Postives = 65/89 (73.03%), Query Frame = 0

Query: 32  EHVLENLDSLWFFATVFSNRAPPLPSPPPPPVEKPTQNGFVEPPAEEIATPITQIEQN-- 91
           + VL+NLDSLWFFATVFSNR PP P PPPP V+KPTQN F EPP  EIATPI Q +QN  
Sbjct: 4   QQVLQNLDSLWFFATVFSNRTPP-PPPPPPVVQKPTQNDFDEPPGGEIATPIFQNQQNVG 63

Query: 92  ---DVGDEKKIENGGGVG-IKTEEKEQRK 115
              ++ DEK  E GGG+G I TEE+ + +
Sbjct: 64  EERNIVDEKTNETGGGLGLIITEERRKSR 91

BLAST of Clc03G07940 vs. NCBI nr
Match: KAG7019562.1 (hypothetical protein SDJN02_18523, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-14
Identity = 53/89 (59.55%), Postives = 64/89 (71.91%), Query Frame = 0

Query: 32  EHVLENLDSLWFFATVFSNRAPPLPSPPPPPVEKPTQNGFVEPPAEEIATPITQIEQN-- 91
           + VL+NLDSLWFFATVFSNR P    PPPP V+KPTQ+ FVEPP  EIATPI Q +QN  
Sbjct: 4   QQVLQNLDSLWFFATVFSNRTP----PPPPVVQKPTQHDFVEPPGGEIATPIFQNQQNVG 63

Query: 92  ---DVGDEKKIENGGGVG-IKTEEKEQRK 115
              ++ DEK  E GGG+G I TEE+ + +
Sbjct: 64  EERNIVDEKTNETGGGLGLIITEERRKSR 88

BLAST of Clc03G07940 vs. NCBI nr
Match: XP_023000977.1 (uncharacterized protein LOC111495257 [Cucurbita maxima])

HSP 1 Score: 89.4 bits (220), Expect = 2.2e-14
Identity = 55/91 (60.44%), Postives = 65/91 (71.43%), Query Frame = 0

Query: 32  EHVLENLDSLWFFATVFSNRAPPL-PSPPPPPVEKPTQNGFVEPPAEEIATPITQIEQND 91
           + VL+NLDSLWFFATVFSN+ PP  PSPP P V+KPT+N FVE P  EIATPI Q +QN 
Sbjct: 4   QQVLQNLDSLWFFATVFSNKMPPAPPSPPTPVVQKPTENDFVELPGGEIATPIFQNQQN- 63

Query: 92  VGDEKKI------ENGGGVG-IKTEEKEQRK 115
           VGDE+ I      E GGG G I TEE+ + +
Sbjct: 64  VGDERNIVDEKTNETGGGFGSIITEERRKSR 93

BLAST of Clc03G07940 vs. ExPASy TrEMBL
Match: A0A6J1KF61 (uncharacterized protein LOC111495257 OS=Cucurbita maxima OX=3661 GN=LOC111495257 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.1e-14
Identity = 55/91 (60.44%), Postives = 65/91 (71.43%), Query Frame = 0

Query: 32  EHVLENLDSLWFFATVFSNRAPPL-PSPPPPPVEKPTQNGFVEPPAEEIATPITQIEQND 91
           + VL+NLDSLWFFATVFSN+ PP  PSPP P V+KPT+N FVE P  EIATPI Q +QN 
Sbjct: 4   QQVLQNLDSLWFFATVFSNKMPPAPPSPPTPVVQKPTENDFVELPGGEIATPIFQNQQN- 63

Query: 92  VGDEKKI------ENGGGVG-IKTEEKEQRK 115
           VGDE+ I      E GGG G I TEE+ + +
Sbjct: 64  VGDERNIVDEKTNETGGGFGSIITEERRKSR 93

BLAST of Clc03G07940 vs. ExPASy TrEMBL
Match: A0A5A7UQZ2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002450 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-13
Identity = 47/83 (56.63%), Postives = 58/83 (69.88%), Query Frame = 0

Query: 32  EHVLENLDSLWFFATVFSNRAPPLPSPPPPPVEKPTQNGFVEPPAEEIATPITQIEQNDV 91
           + V EN DSLWFF+TVFSNR PP+       VEKP QN FVEP  EEIATPIT+ E+NDV
Sbjct: 4   QQVFENFDSLWFFSTVFSNRTPPV-------VEKPIQNDFVEPLGEEIATPITRNEENDV 63

Query: 92  GDEKKIENGGGVGIKTEEKEQRK 115
           G+EK++E        TEE E+++
Sbjct: 64  GEEKEME--------TEEMEEKR 71

BLAST of Clc03G07940 vs. ExPASy TrEMBL
Match: Q58A15 (Uncharacterized protein 7G02 (Fragment) OS=Cucumis melo OX=3656 GN=7G02 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-13
Identity = 47/83 (56.63%), Postives = 58/83 (69.88%), Query Frame = 0

Query: 32  EHVLENLDSLWFFATVFSNRAPPLPSPPPPPVEKPTQNGFVEPPAEEIATPITQIEQNDV 91
           + V EN DSLWFF+TVFSNR PP+       VEKP QN FVEP  EEIATPIT+ E+NDV
Sbjct: 8   QQVFENFDSLWFFSTVFSNRTPPV-------VEKPIQNDFVEPLGEEIATPITRNEENDV 67

Query: 92  GDEKKIENGGGVGIKTEEKEQRK 115
           G+EK++E        TEE E+++
Sbjct: 68  GEEKEME--------TEEMEEKR 75

BLAST of Clc03G07940 vs. ExPASy TrEMBL
Match: A0A1S3B8X4 (uncharacterized protein LOC103487056 OS=Cucumis melo OX=3656 GN=LOC103487056 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-13
Identity = 47/83 (56.63%), Postives = 58/83 (69.88%), Query Frame = 0

Query: 32  EHVLENLDSLWFFATVFSNRAPPLPSPPPPPVEKPTQNGFVEPPAEEIATPITQIEQNDV 91
           + V EN DSLWFF+TVFSNR PP+       VEKP QN FVEP  EEIATPIT+ E+NDV
Sbjct: 4   QQVFENFDSLWFFSTVFSNRTPPV-------VEKPIQNDFVEPLGEEIATPITRNEENDV 63

Query: 92  GDEKKIENGGGVGIKTEEKEQRK 115
           G+EK++E        TEE E+++
Sbjct: 64  GEEKEME--------TEEMEEKR 71

BLAST of Clc03G07940 vs. ExPASy TrEMBL
Match: A0A6J1EGY0 (uncharacterized protein LOC111434099 OS=Cucurbita moschata OX=3662 GN=LOC111434099 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.6e-13
Identity = 51/89 (57.30%), Postives = 62/89 (69.66%), Query Frame = 0

Query: 32  EHVLENLDSLWFFATVFSNRAPPLPSPPPPPVEKPTQNGFVEPPAEEIATPITQIEQN-- 91
           + VL+NLDSLWFFATVFSNR       PPP V+KPTQ+ FVEPP  EIATPI Q +QN  
Sbjct: 4   QQVLQNLDSLWFFATVFSNRT------PPPVVQKPTQHDFVEPPGGEIATPIFQNQQNVG 63

Query: 92  ---DVGDEKKIENGGGVG-IKTEEKEQRK 115
              ++ DEK  E GGG+G I TEE+ + +
Sbjct: 64  EERNIVDEKTNETGGGLGLIITEERRKSR 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038895160.17.4e-2679.52uncharacterized protein LOC120083464 [Benincasa hispida][more]
XP_023520136.11.7e-1763.33uncharacterized protein LOC111783440 [Cucurbita pepo subsp. pepo][more]
KAG6583945.15.3e-1661.80hypothetical protein SDJN03_19877, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7019562.11.0e-1459.55hypothetical protein SDJN02_18523, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023000977.12.2e-1460.44uncharacterized protein LOC111495257 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1KF611.1e-1460.44uncharacterized protein LOC111495257 OS=Cucurbita maxima OX=3661 GN=LOC111495257... [more]
A0A5A7UQZ21.2e-1356.63Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Q58A151.2e-1356.63Uncharacterized protein 7G02 (Fragment) OS=Cucumis melo OX=3656 GN=7G02 PE=2 SV=... [more]
A0A1S3B8X41.2e-1356.63uncharacterized protein LOC103487056 OS=Cucumis melo OX=3656 GN=LOC103487056 PE=... [more]
A0A6J1EGY01.6e-1357.30uncharacterized protein LOC111434099 OS=Cucurbita moschata OX=3662 GN=LOC1114340... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..114
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 89..114
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc03G07940.2Clc03G07940.2mRNA