Clc03G06350 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G06350
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	DNA ligase 1
Location	ClcChr03: 6034184 .. 6036676 (+)
RNA-Seq Expression	Clc03G06350
Synteny	Clc03G06350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCACAATTCAGCGGGATATTTACAAGTCTTGATAATTCAACATTCCAAACGCTTCGAAACAGAGAACGGTTCTCCATCTTCAATTCTAAAGTTTTCTTCAACCTCGATCCAGATGGGGAACATGAAAATTCCTACTATTAAAACAAGAACCAGGAAGCGAGTCTCCGACACCGATCTCAAGAGCTCCGATCAAAGGAAGCGGACCAACGATGATATCGACCTCGATCTCGACCTTTCCGAGTACGTACTATTTTTTCCATTTCTGTTTCACTTTCTGGTGATATTTTGGAGAATCTTGACAATGATGTTTATTGTATGCAGCGATCTCAAAGGGATAGTGTCGGCGCTGAATCAGATCAAAGAGAGAGCTCATAAGGACGACCAGAAGAAGAATGAGGAGACGATCTCAAGGTAATTTGAGTGGTTTTTCTCAATCGGAACTTATTGATGATTAGTTAATTGACTCGAGCTGCTGAAATTGTGTGTTATTGAGTGCTTATTTCCGTTTCTCGACTTTCTGTATACGGCTGCTCGTTTGCACCTTCATTTTCCTTCTTCTGGTAGATTTGAACTGACCTCACTGGTAGTTTGATTTTATGATTTGCTTGATATGATTCGTTAGAAACTTGAAATGAGAGCCTGTTTAAACTTAGCTCACTGGATCAGACTTGCTTCGCCTCACTGTTTTCTGTCGAACATTTGACCGTTTTCCAACTTCAATCCATGCCGCTTACCTAATACTCTTCTTCTTGTCCTGCACTAAAACGATGTTTTGAATGTTAATTTCATATTATTGACAGTGTAGCGACTGAGATGAGAACAATGATTGAGGAGGTGAAATCTAAACTTGAGAAGGACAGGTAGATTTCAGAACTATCCTGAACGAGTTCACGATGTTGCTCCCTTCGATATTTGGTTGAATTAGTTATAAACGAATGAATGCAATCTATTTCCTCCAACCAATTTCAGGCAAAATTTTGCAAAAGCTCTATCGAAAAGCTCAAAAGAGGTTGGTAGAGAACGACGACTTGAAATAGAGGCCATTCAAGCGCAAATTTGAAGTCGATTATATTTTGTTTCTAGTTTCATTGTATTAATGCATTTTCCAGCTGTTGTGTTAAAATCAATATGGCTTCTTTATAGTGTGAAAACTGTTTGAAGGACGAAACTGCTAAATTCCAAGCACTTTACGAGAAATTCACAAAAGAGAAAGCTACACATCTCCAGGCCATAAAAGGTAACATCCACTTCGAGTGAGAAATATTCATTTTCTACTCCTGTTTAGACTAATTTTCATTTTATTTATTAAATCTCAACTGGCGCGAGACCTTCATAATGGATGAGCAAATCCCTACCATGCTTTATAATTTTCCATCATCGCATTCATGAGGTTAGGCTTCATTCCATTGCATAAAAGAATCCTCGGTCTTTGAGAGACATCATAGTGCTGAGTGGCAATTGAAGCATTGACCATGGAGTTAGCCAGTTAGGTCCTCAACTACAACATGTGCGTTCCATCAATACTGATTGCCTTTTGGATCCCTTTCTTGAAATAATTTGGATGTGTATGATATATTGGTATTGAAGAACCTTTCACATTATGGGCCTATGATCTTAAACCATTGGAGCTCTAAGAAAAGCCTCTTTCTTCAAGACGCTTCTTTAAATATCTTTTCCTAATTTAAGATGCTGTTTGGCTTTGGCAGATACCATTTCCAAATTTGAAGAGGAGAAAGAAAGACTATTTGCAAAATATGAACAACTGAGTATGCATGAAGTTATGCATTAATCAGTACAGAACATTTTACTATTATTATTATGATTATTATCTATTTTCCTTCGTATTTGTAACAGGAAAAAGAGAAAGGAGCCTGATATCTGAACAAGAGAAAGCTTGTGCTGAAAAGATTGCTCAATTGGAGGAGTCTTTGAAAAGGAAAAAGCAGGTAGAGTACGACCTCTAATTCATAAAATTAGCACTAACGCCTTACCCCTTCCATGCTAATGGGTATCTTAATTATACACATTGATCTGGAACACAGGATGATAAGACTTTCAGCCTTTTGCGGAAGACTCTTGGTTCATTTCTAGAAACTGGTTCAGATGAGGACTTCCCAGCTGATGATTGAAGGTATTCATGGATTGAGAAACGTTCAATAGTGATTACTCTGCACCACTCTCTTTACTACTCGGAAATCAATCTGCTATTTTTCTCTCACAAACAATTTGATGCAATTATCTAGTCTACATTCTCGTACTGACATATTTCTATGATCCTCTCTTTGAGGATCAGTATAGGTCTCTTAATAGTCTGGATTGTAAATTGAAATGCTAAATTGAGTCATAAGAGTCATTTCCTTAACTTTAATTGTTGGCCTATAGCTGTAGCCGCTTTGCCTCTCTAATTGTTAAATGTATTCTCAAGTGGCAAGTTTATCCCTCAACATGGTATTTGTTTCAAAAATACTCATATTCTTTCAAAAGCTGC

mRNA sequence

ATGCATCACAATTCAGCGGGATATTTACAAGTCTTGATAATTCAACATTCCAAACGCTTCGAAACAGAGAACGGTTCTCCATCTTCAATTCTAAAGTTTTCTTCAACCTCGATCCAGATGGGGAACATGAAAATTCCTACTATTAAAACAAGAACCAGGAAGCGAGTCTCCGACACCGATCTCAAGAGCTCCGATCAAAGGAAGCGGACCAACGATGATATCGACCTCGATCTCGACCTTTCCGACGATCTCAAAGGGATAGTGTCGGCGCTGAATCAGATCAAAGAGAGAGCTCATAAGGACGACCAGAAGAAGAATGAGGAGACGATCTCAAGTGTAGCGACTGAGATGAGAACAATGATTGAGGAGGTGAAATCTAAACTTGAGAAGGACAGGCAAAATTTTGCAAAAGCTCTATCGAAAAGCTCAAAAGAGTGTGAAAACTGTTTGAAGGACGAAACTGCTAAATTCCAAGCACTTTACGAGAAATTCACAAAAGAGAAAGCTACACATCTCCAGGCCATAAAAGATACCATTTCCAAATTTGAAGAGGAGAAAGAAAGACTATTTGCAAAATATGAACAACTGAGAAAAAGAGAAAGGAGCCTGATATCTGAACAAGAGAAAGCTTGTGCTGAAAAGATTGCTCAATTGGAGGAGTCTTTGAAAAGGAAAAAGCAGGATGATAAGACTTTCAGCCTTTTGCGGAAGACTCTTGGTTCATTTCTAGAAACTGGTTCAGATGAGGACTTCCCAGCTGATGATTGAAGGTATTCATGGATTGAGAAACGTTCAATAGTGATTACTCTGCACCACTCTCTTTACTACTCGGAAATCAATCTGCTATTTTTCTCTCACAAACAATTTGATGCAATTATCTAGTCTACATTCTCGTACTGACATATTTCTATGATCCTCTCTTTGAGGATCAGTATAGGTCTCTTAATAGTCTGGATTGTAAATTGAAATGCTAAATTGAGTCATAAGAGTCATTTCCTTAACTTTAATTGTTGGCCTATAGCTGTAGCCGCTTTGCCTCTCTAATTGTTAAATGTATTCTCAAGTGGCAAGTTTATCCCTCAACATGGTATTTGTTTCAAAAATACTCATATTCTTTCAAAAGCTGC

Coding sequence (CDS)

ATGCATCACAATTCAGCGGGATATTTACAAGTCTTGATAATTCAACATTCCAAACGCTTCGAAACAGAGAACGGTTCTCCATCTTCAATTCTAAAGTTTTCTTCAACCTCGATCCAGATGGGGAACATGAAAATTCCTACTATTAAAACAAGAACCAGGAAGCGAGTCTCCGACACCGATCTCAAGAGCTCCGATCAAAGGAAGCGGACCAACGATGATATCGACCTCGATCTCGACCTTTCCGACGATCTCAAAGGGATAGTGTCGGCGCTGAATCAGATCAAAGAGAGAGCTCATAAGGACGACCAGAAGAAGAATGAGGAGACGATCTCAAGTGTAGCGACTGAGATGAGAACAATGATTGAGGAGGTGAAATCTAAACTTGAGAAGGACAGGCAAAATTTTGCAAAAGCTCTATCGAAAAGCTCAAAAGAGTGTGAAAACTGTTTGAAGGACGAAACTGCTAAATTCCAAGCACTTTACGAGAAATTCACAAAAGAGAAAGCTACACATCTCCAGGCCATAAAAGATACCATTTCCAAATTTGAAGAGGAGAAAGAAAGACTATTTGCAAAATATGAACAACTGAGAAAAAGAGAAAGGAGCCTGATATCTGAACAAGAGAAAGCTTGTGCTGAAAAGATTGCTCAATTGGAGGAGTCTTTGAAAAGGAAAAAGCAGGATGATAAGACTTTCAGCCTTTTGCGGAAGACTCTTGGTTCATTTCTAGAAACTGGTTCAGATGAGGACTTCCCAGCTGATGATTGA

Protein sequence

MHHNSAGYLQVLIIQHSKRFETENGSPSSILKFSSTSIQMGNMKIPTIKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAHKDDQKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPADD

Homology

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BLAST of Clc03G06350 vs. NCBI nr
Match: XP_004146600.1 (DNA ligase 1 isoform X1 [Cucumis sativus] >XP_031744624.1 DNA ligase 1 isoform X1 [Cucumis sativus] >KGN64675.1 hypothetical protein Csa_013771 [Cucumis sativus])

HSP 1 Score: 382.9 bits (982), Expect = 2.2e-102
Identity = 209/216 (96.76%), Postives = 213/216 (98.61%), Query Frame = 0


Query: 40  MGNMKIPTIKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 99
           MGN+KIPT KTR+RKRVSDTDL SSDQRK+TNDDIDLDLDLSDDLKGIVSALNQIKERAH
Sbjct: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKQTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 100 KDDQKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 159
           KDD KKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120

Query: 160 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 219
           LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 220 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPADD 256
           ESLKRKKQDDKTFSLLRKTLGSFL+TGSDEDFPADD
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216

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BLAST of Clc03G06350 vs. NCBI nr
Match: XP_038895277.1 (DNA ligase 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 380.2 bits (975), Expect = 1.4e-101
Identity = 207/216 (95.83%), Postives = 210/216 (97.22%), Query Frame = 0


Query: 40  MGNMKIPTIKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 99
           MGNMK PT K R RKRVSDTDL SSDQRKRTNDD+DLDLDLSDDLKGIVSALNQIKERAH
Sbjct: 1   MGNMKTPTTKARVRKRVSDTDLTSSDQRKRTNDDLDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 100 KDDQKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 159
           KDDQKKNEETISSVATEMRTMIE+VKSKLEKDRQNFAKALSKSSKECENCLKDETAKF+A
Sbjct: 61  KDDQKKNEETISSVATEMRTMIEQVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFRA 120

Query: 160 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 219
           LYEKFTKEKATHLQAIKDTISKFEEEKERLF KYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFVKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 220 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPADD 256
           ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPADD
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPADD 216

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BLAST of Clc03G06350 vs. NCBI nr
Match: XP_008442500.1 (PREDICTED: DNA ligase 1 isoform X1 [Cucumis melo] >KAA0056986.1 DNA ligase 1 isoform X1 [Cucumis melo var. makuwa] >TYK26414.1 DNA ligase 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 376.7 bits (966), Expect = 1.6e-100
Identity = 207/216 (95.83%), Postives = 211/216 (97.69%), Query Frame = 0


Query: 40  MGNMKIPTIKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 99
           M N+KIPT KTR+RKRVSDTDL SS+QR RTNDDIDLDLDLSDDLKGIVSALNQIKERAH
Sbjct: 1   MVNIKIPTAKTRSRKRVSDTDLTSSEQRTRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 100 KDDQKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 159
           KDD KKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120

Query: 160 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 219
           LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 220 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPADD 256
           ESLKRKKQDDKTFSLLRKTLGSFL+TGSDEDFPADD
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216

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BLAST of Clc03G06350 vs. NCBI nr
Match: XP_023001751.1 (DNA ligase 1 [Cucurbita maxima])

HSP 1 Score: 370.2 bits (949), Expect = 1.5e-98
Identity = 202/216 (93.52%), Postives = 209/216 (96.76%), Query Frame = 0


Query: 40  MGNMKIPTIKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 99
           MGNMKIP  KTRTRKRVSD DL SSD+RKRTN+DIDLDLDLSDDLKGIVSALNQIKERA 
Sbjct: 1   MGNMKIPIAKTRTRKRVSDPDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 60

Query: 100 KDDQKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 159
           KDDQKKNEETISSV+TE+RTMIEEVKSK EKDRQ+FAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120

Query: 160 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 219
           LYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 220 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPADD 256
           ESLKRKKQDD+TFSLLRKTLGSFLETGSDEDFP DD
Sbjct: 181 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFPTDD 216

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BLAST of Clc03G06350 vs. NCBI nr
Match: XP_022927498.1 (DNA ligase 1 [Cucurbita moschata] >KAG6583999.1 hypothetical protein SDJN03_19931, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019621.1 hypothetical protein SDJN02_18584, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 369.4 bits (947), Expect = 2.5e-98
Identity = 202/216 (93.52%), Postives = 210/216 (97.22%), Query Frame = 0


Query: 40  MGNMKIPTIKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 99
           MGNMKIP  KTRTRKRVSD+DL SSD+RKRTN+DIDLDLDLSDDLKGIVSALNQIKERA 
Sbjct: 1   MGNMKIPIAKTRTRKRVSDSDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 60

Query: 100 KDDQKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 159
           KDDQKKNEETISSV+TE+RTMIEEVKSK EKDRQ+FAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120

Query: 160 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 219
           LYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 220 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPADD 256
           ESLKRKKQDD+TFSLLRKTLGSFLETGSDEDF ADD
Sbjct: 181 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFQADD 216

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BLAST of Clc03G06350 vs. ExPASy TrEMBL
Match: A0A0A0LRW7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073820 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 1.1e-102
Identity = 209/216 (96.76%), Postives = 213/216 (98.61%), Query Frame = 0


Query: 40  MGNMKIPTIKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 99
           MGN+KIPT KTR+RKRVSDTDL SSDQRK+TNDDIDLDLDLSDDLKGIVSALNQIKERAH
Sbjct: 1   MGNIKIPTAKTRSRKRVSDTDLSSSDQRKQTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 100 KDDQKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 159
           KDD KKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120

Query: 160 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 219
           LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 220 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPADD 256
           ESLKRKKQDDKTFSLLRKTLGSFL+TGSDEDFPADD
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216

[Close]

BLAST of Clc03G06350 vs. ExPASy TrEMBL
Match: A0A5D3DS94 (DNA ligase 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00780 PE=4 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 7.6e-101
Identity = 207/216 (95.83%), Postives = 211/216 (97.69%), Query Frame = 0


Query: 40  MGNMKIPTIKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 99
           M N+KIPT KTR+RKRVSDTDL SS+QR RTNDDIDLDLDLSDDLKGIVSALNQIKERAH
Sbjct: 1   MVNIKIPTAKTRSRKRVSDTDLTSSEQRTRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 100 KDDQKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 159
           KDD KKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120

Query: 160 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 219
           LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 220 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPADD 256
           ESLKRKKQDDKTFSLLRKTLGSFL+TGSDEDFPADD
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216

[Close]

BLAST of Clc03G06350 vs. ExPASy TrEMBL
Match: A0A1S3B5C2 (DNA ligase 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486349 PE=4 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 7.6e-101
Identity = 207/216 (95.83%), Postives = 211/216 (97.69%), Query Frame = 0


Query: 40  MGNMKIPTIKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 99
           M N+KIPT KTR+RKRVSDTDL SS+QR RTNDDIDLDLDLSDDLKGIVSALNQIKERAH
Sbjct: 1   MVNIKIPTAKTRSRKRVSDTDLTSSEQRTRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 60

Query: 100 KDDQKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 159
           KDD KKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDLKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 120

Query: 160 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 219
           LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 220 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPADD 256
           ESLKRKKQDDKTFSLLRKTLGSFL+TGSDEDFPADD
Sbjct: 181 ESLKRKKQDDKTFSLLRKTLGSFLDTGSDEDFPADD 216

[Close]

BLAST of Clc03G06350 vs. ExPASy TrEMBL
Match: A0A6J1KJH3 (DNA ligase 1 OS=Cucurbita maxima OX=3661 GN=LOC111495793 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 7.1e-99
Identity = 202/216 (93.52%), Postives = 209/216 (96.76%), Query Frame = 0


Query: 40  MGNMKIPTIKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 99
           MGNMKIP  KTRTRKRVSD DL SSD+RKRTN+DIDLDLDLSDDLKGIVSALNQIKERA 
Sbjct: 1   MGNMKIPIAKTRTRKRVSDPDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 60

Query: 100 KDDQKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 159
           KDDQKKNEETISSV+TE+RTMIEEVKSK EKDRQ+FAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120

Query: 160 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 219
           LYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 220 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPADD 256
           ESLKRKKQDD+TFSLLRKTLGSFLETGSDEDFP DD
Sbjct: 181 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFPTDD 216

[Close]

BLAST of Clc03G06350 vs. ExPASy TrEMBL
Match: A0A6J1EL64 (DNA ligase 1 OS=Cucurbita moschata OX=3662 GN=LOC111434306 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 1.2e-98
Identity = 202/216 (93.52%), Postives = 210/216 (97.22%), Query Frame = 0


Query: 40  MGNMKIPTIKTRTRKRVSDTDLKSSDQRKRTNDDIDLDLDLSDDLKGIVSALNQIKERAH 99
           MGNMKIP  KTRTRKRVSD+DL SSD+RKRTN+DIDLDLDLSDDLKGIVSALNQIKERA 
Sbjct: 1   MGNMKIPIAKTRTRKRVSDSDLTSSDKRKRTNEDIDLDLDLSDDLKGIVSALNQIKERAQ 60

Query: 100 KDDQKKNEETISSVATEMRTMIEEVKSKLEKDRQNFAKALSKSSKECENCLKDETAKFQA 159
           KDDQKKNEETISSV+TE+RTMIEEVKSK EKDRQ+FAKALSKSSKECENCLKDETAKFQA
Sbjct: 61  KDDQKKNEETISSVSTEIRTMIEEVKSKFEKDRQSFAKALSKSSKECENCLKDETAKFQA 120

Query: 160 LYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 219
           LYEKFTKEKATHLQA+KDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE
Sbjct: 121 LYEKFTKEKATHLQAMKDTISKFEEEKERLFAKYEQLRKRERSLISEQEKACAEKIAQLE 180

Query: 220 ESLKRKKQDDKTFSLLRKTLGSFLETGSDEDFPADD 256
           ESLKRKKQDD+TFSLLRKTLGSFLETGSDEDF ADD
Sbjct: 181 ESLKRKKQDDRTFSLLRKTLGSFLETGSDEDFQADD 216

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BLAST of Clc03G06350 vs. TAIR 10
Match: AT2G33793.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 239.2 bits (609), Expect = 3.7e-63
Identity = 125/182 (68.68%), Postives = 161/182 (88.46%), Query Frame = 0


Query: 75  DLDLDLSDDLKGIVSALNQIKERAHKDDQKKNEETISSVATEMRTMIEEVKSKLEKDRQN 134
           +LD+D+S D KGI+SAL Q +E+AH+D +KK EE+ISSV+TE+++ I+E+KSKLEK+RQN
Sbjct: 31  ELDVDVSSDFKGIMSALQQFREKAHEDGRKKKEESISSVSTEVKSKIDELKSKLEKERQN 90

Query: 135 FAKALSKSSKECENCLKDETAKFQALYEKFTKEKATHLQAIKDTISKFEEEKERLFAKYE 194
           F+KALSKSSKECEN LKDE AKF+ L++KF K+KA HLQ +KDTISKFEE+KERL+ +YE
Sbjct: 91  FSKALSKSSKECENILKDEAAKFEELHKKFVKDKADHLQGLKDTISKFEEDKERLYMRYE 150

Query: 195 QLRKRERSLISEQEKACAEKIAQLEESLKRKKQDDKTFSLLRKTLGSFLET-GSDEDFPA 254
           QLRK+E+++I+EQEK C EK+AQLEESLK+KK+ DKTFS+LRKTLGSFLE   SDE+FP 
Sbjct: 151 QLRKKEKTMITEQEKFCTEKLAQLEESLKKKKRGDKTFSILRKTLGSFLENEASDEEFPP 210

Query: 255 DD 256
           D+
Sbjct: 211 DE 212

The following BLAST results are available for this feature:

BLAST of Clc03G06350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146600.1	2.2e-102	96.76	DNA ligase 1 isoform X1 [Cucumis sativus] >XP_031744624.1 DNA ligase 1 isoform X...	[more]
XP_038895277.1	1.4e-101	95.83	DNA ligase 1 isoform X1 [Benincasa hispida]	[more]
XP_008442500.1	1.6e-100	95.83	PREDICTED: DNA ligase 1 isoform X1 [Cucumis melo] >KAA0056986.1 DNA ligase 1 iso...	[more]
XP_023001751.1	1.5e-98	93.52	DNA ligase 1 [Cucurbita maxima]	[more]
XP_022927498.1	2.5e-98	93.52	DNA ligase 1 [Cucurbita moschata] >KAG6583999.1 hypothetical protein SDJN03_1993...	[more]

BLAST of Clc03G06350 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc03G06350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRW7	1.1e-102	96.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073820 PE=4 SV=1	[more]
A0A5D3DS94	7.6e-101	95.83	DNA ligase 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B5C2	7.6e-101	95.83	DNA ligase 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486349 PE=4 SV=1	[more]
A0A6J1KJH3	7.1e-99	93.52	DNA ligase 1 OS=Cucurbita maxima OX=3661 GN=LOC111495793 PE=4 SV=1	[more]
A0A6J1EL64	1.2e-98	93.52	DNA ligase 1 OS=Cucurbita moschata OX=3662 GN=LOC111434306 PE=4 SV=1	[more]

BLAST of Clc03G06350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33793.1	3.7e-63	68.68	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 172..206
None	No IPR available	COILS	Coil	Coil	coord: 114..141
None	No IPR available	COILS	Coil	Coil	coord: 208..228
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..68
None	No IPR available	PANTHER	PTHR35295:SF1	DNA LIGASE-LIKE PROTEIN	coord: 49..255
None	No IPR available	PANTHER	PTHR35295	DNA LIGASE-LIKE PROTEIN	coord: 49..255

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G06350.1	Clc03G06350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007131	reciprocal meiotic recombination
cellular_component	GO:0099086	synaptonemal structure
molecular_function	GO:0016874	ligase activity