Clc03G05300 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G05300
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	scarecrow-like protein 15
Location	ClcChr03: 5044496 .. 5044876 (-)
RNA-Seq Expression	Clc03G05300
Synteny	Clc03G05300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATGGAAGGTCTACGACTTGGATCACCTTGCACACATAGTAAAGCAATATGAAAGGCATCTAAGCACACATATATTGTGGATTCATAATTTTCAACTTGGTCAAGTGATGTTGGAGCGGCTCAATCAACACCTTCAATCCGCCTCCTCCGCTAAGCTGAGCCCCGTTGATCGGGGCGCTTTCTTCTTCAAAGAGGCTCTTCAATCTCTCCTCTCCGCCTCTCCCAACTACAATAATCACCTCTATTCTTGGCTCCATATTGTCCATACCATTAAGTCCTACAAGGCCTTATCTGCAATTTCTCTCATTCCCAAGTTTTCTCACTTCCTATTATTGGTTTTGGTATTGGGTTTGGAAGGCAGTATGCCTCTTTCATGA

mRNA sequence

ATGCCATGGAAGGTCTACGACTTGGATCACCTTGCACACATAGTAAAGCAATATGAAAGGCATCTAAGCACACATATATTGTGGATTCATAATTTTCAACTTGGTCAAGTGATGTTGGAGCGGCTCAATCAACACCTTCAATCCGCCTCCTCCGCTAAGCTGAGCCCCGTTGATCGGGGCGCTTTCTTCTTCAAAGAGGCTCTTCAATCTCTCCTCTCCGCCTCTCCCAACTACAATAATCACCTCTATTCTTGGCTCCATATTGTCCATACCATTAAGTCCTACAAGGCCTTATCTGCAATTTCTCTCATTCCCAAGTTTTCTCACTTCCTATTATTGGTTTTGGTATTGGGTTTGGAAGGCAGTATGCCTCTTTCATGA

Coding sequence (CDS)

ATGCCATGGAAGGTCTACGACTTGGATCACCTTGCACACATAGTAAAGCAATATGAAAGGCATCTAAGCACACATATATTGTGGATTCATAATTTTCAACTTGGTCAAGTGATGTTGGAGCGGCTCAATCAACACCTTCAATCCGCCTCCTCCGCTAAGCTGAGCCCCGTTGATCGGGGCGCTTTCTTCTTCAAAGAGGCTCTTCAATCTCTCCTCTCCGCCTCTCCCAACTACAATAATCACCTCTATTCTTGGCTCCATATTGTCCATACCATTAAGTCCTACAAGGCCTTATCTGCAATTTCTCTCATTCCCAAGTTTTCTCACTTCCTATTATTGGTTTTGGTATTGGGTTTGGAAGGCAGTATGCCTCTTTCATGA

Protein sequence

MPWKVYDLDHLAHIVKQYERHLSTHILWIHNFQLGQVMLERLNQHLQSASSAKLSPVDRGAFFFKEALQSLLSASPNYNNHLYSWLHIVHTIKSYKALSAISLIPKFSHFLLLVLVLGLEGSMPLS

Homology

[Close]

BLAST of Clc03G05300 vs. NCBI nr
Match: XP_038877286.1 (scarecrow-like protein 15 [Benincasa hispida])

HSP 1 Score: 102.8 bits (255), Expect = 2.2e-18
Identity = 55/81 (67.90%), Postives = 64/81 (79.01%), Query Frame = 0


Query: 30  HNFQLGQVMLERLNQHLQSASSAKLSPVDRGAFFFKEALQSLLSASPNYNNHLYSWLHIV 89
           ++FQL QV+LERLNQ LQS+SS   +P+ R AFFFK+ALQSLLS SPN +N L SW  IV
Sbjct: 187 NDFQLAQVILERLNQRLQSSSST--NPLHRAAFFFKDALQSLLSPSPNRHNRLSSWPDIV 246

Query: 90  HTIKSYKALSAISLIPKFSHF 111
           HTIK+YKA S IS IP FSHF
Sbjct: 247 HTIKAYKAFSVISPIPMFSHF 265

[Close]

BLAST of Clc03G05300 vs. NCBI nr
Match: XP_008453725.1 (PREDICTED: scarecrow-like protein 15 [Cucumis melo] >KAA0044759.1 scarecrow-like protein 15 [Cucumis melo var. makuwa] >TYK16704.1 scarecrow-like protein 15 [Cucumis melo var. makuwa])

HSP 1 Score: 101.7 bits (252), Expect = 4.8e-18
Identity = 55/81 (67.90%), Postives = 62/81 (76.54%), Query Frame = 0


Query: 30  HNFQLGQVMLERLNQHLQSASSAKLSPVDRGAFFFKEALQSLLSASPNYNNHLYSWLHIV 89
           ++FQL  V+LERLNQ LQS SS   +P+ R AFFFKEALQSLLS SPN +N L SW  IV
Sbjct: 183 NDFQLAHVILERLNQRLQSTSST--NPLHRAAFFFKEALQSLLSPSPNRHNRLSSWPDIV 242

Query: 90  HTIKSYKALSAISLIPKFSHF 111
           HTIK+YKA S IS IP FSHF
Sbjct: 243 HTIKAYKAFSVISPIPMFSHF 261

[Close]

BLAST of Clc03G05300 vs. NCBI nr
Match: XP_031740177.1 (scarecrow-like protein 15 [Cucumis sativus] >KGN53268.1 hypothetical protein Csa_014573 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 4.8e-18
Identity = 55/81 (67.90%), Postives = 62/81 (76.54%), Query Frame = 0


Query: 30  HNFQLGQVMLERLNQHLQSASSAKLSPVDRGAFFFKEALQSLLSASPNYNNHLYSWLHIV 89
           ++FQL  V+LERLNQ LQS SS   +P+ R AFFFKEALQSLLS SPN +N L SW  IV
Sbjct: 184 NDFQLAHVILERLNQRLQSTSST--NPLHRAAFFFKEALQSLLSPSPNRHNRLSSWPDIV 243

Query: 90  HTIKSYKALSAISLIPKFSHF 111
           HTIK+YKA S IS IP FSHF
Sbjct: 244 HTIKAYKAFSVISPIPMFSHF 262

[Close]

BLAST of Clc03G05300 vs. NCBI nr
Match: XP_038877289.1 (scarecrow-like protein 15 [Benincasa hispida])

HSP 1 Score: 101.7 bits (252), Expect = 4.8e-18
Identity = 55/81 (67.90%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 30  HNFQLGQVMLERLNQHLQSASSAKLSPVDRGAFFFKEALQSLLSASPNYNNHLYSWLHIV 89
           ++FQL  V+LERLNQ LQS+SSAK  P+ R AFF K+ALQSLLS SPN +N L SW  IV
Sbjct: 167 NDFQLAHVILERLNQRLQSSSSAK--PLHRAAFFIKDALQSLLSPSPNRHNRLSSWPDIV 226

Query: 90  HTIKSYKALSAISLIPKFSHF 111
           HTIK+YKA S IS IP FSHF
Sbjct: 227 HTIKAYKAFSVISPIPMFSHF 245

[Close]

BLAST of Clc03G05300 vs. NCBI nr
Match: XP_023552315.1 (scarecrow-like protein 15 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-16
Identity = 54/81 (66.67%), Postives = 62/81 (76.54%), Query Frame = 0


Query: 30  HNFQLGQVMLERLNQHLQSASSAKLSPVDRGAFFFKEALQSLLSASPNYNNHLYSWLHIV 89
           ++F L  V+LERLN  LQSASSAK  P+ R AFFFKEALQSLLSA+ N +N   SW  IV
Sbjct: 180 NDFHLAHVILERLNHRLQSASSAK--PLHRAAFFFKEALQSLLSAAANRHNSSSSWPDIV 239

Query: 90  HTIKSYKALSAISLIPKFSHF 111
           HTIK++KA SAIS IP FSHF
Sbjct: 240 HTIKAHKAFSAISPIPLFSHF 258

[Close]

BLAST of Clc03G05300 vs. ExPASy Swiss-Prot
Match: O23210 (Scarecrow-like protein 15 OS=Arabidopsis thaliana OX=3702 GN=SCL15 PE=1 SV=3)

HSP 1 Score: 65.5 bits (158), Expect = 5.0e-10
Identity = 39/78 (50.00%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 33  QLGQVMLERLNQHLQSASSAKLSPVDRGAFFFKEALQSLLSASPNYNNHLYSWLHIVHTI 92
           QL QV+L RLNQ L+S +     P+ R AF+FKEAL S L+ S      L SW  IV  I
Sbjct: 139 QLAQVVLSRLNQRLRSPAG---RPLQRAAFYFKEALGSFLTGSNRNPIRLSSWSEIVQRI 198

Query: 93  KSYKALSAISLIPKFSHF 111
           ++ K  S IS IP FSHF
Sbjct: 199 RAIKEYSGISPIPLFSHF 213

[Close]

BLAST of Clc03G05300 vs. ExPASy TrEMBL
Match: A0A5D3D0F2 (Scarecrow-like protein 15 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005370 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.3e-18
Identity = 55/81 (67.90%), Postives = 62/81 (76.54%), Query Frame = 0


Query: 30  HNFQLGQVMLERLNQHLQSASSAKLSPVDRGAFFFKEALQSLLSASPNYNNHLYSWLHIV 89
           ++FQL  V+LERLNQ LQS SS   +P+ R AFFFKEALQSLLS SPN +N L SW  IV
Sbjct: 183 NDFQLAHVILERLNQRLQSTSST--NPLHRAAFFFKEALQSLLSPSPNRHNRLSSWPDIV 242

Query: 90  HTIKSYKALSAISLIPKFSHF 111
           HTIK+YKA S IS IP FSHF
Sbjct: 243 HTIKAYKAFSVISPIPMFSHF 261

[Close]

BLAST of Clc03G05300 vs. ExPASy TrEMBL
Match: A0A0A0KUN9 (GRAS family transcription factor OS=Cucumis sativus OX=3659 GN=Csa_4G043840 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.3e-18
Identity = 55/81 (67.90%), Postives = 62/81 (76.54%), Query Frame = 0


Query: 30  HNFQLGQVMLERLNQHLQSASSAKLSPVDRGAFFFKEALQSLLSASPNYNNHLYSWLHIV 89
           ++FQL  V+LERLNQ LQS SS   +P+ R AFFFKEALQSLLS SPN +N L SW  IV
Sbjct: 184 NDFQLAHVILERLNQRLQSTSST--NPLHRAAFFFKEALQSLLSPSPNRHNRLSSWPDIV 243

Query: 90  HTIKSYKALSAISLIPKFSHF 111
           HTIK+YKA S IS IP FSHF
Sbjct: 244 HTIKAYKAFSVISPIPMFSHF 262

[Close]

BLAST of Clc03G05300 vs. ExPASy TrEMBL
Match: A0A1S3BWY3 (scarecrow-like protein 15 OS=Cucumis melo OX=3656 GN=LOC103494368 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.3e-18
Identity = 55/81 (67.90%), Postives = 62/81 (76.54%), Query Frame = 0


Query: 30  HNFQLGQVMLERLNQHLQSASSAKLSPVDRGAFFFKEALQSLLSASPNYNNHLYSWLHIV 89
           ++FQL  V+LERLNQ LQS SS   +P+ R AFFFKEALQSLLS SPN +N L SW  IV
Sbjct: 183 NDFQLAHVILERLNQRLQSTSST--NPLHRAAFFFKEALQSLLSPSPNRHNRLSSWPDIV 242

Query: 90  HTIKSYKALSAISLIPKFSHF 111
           HTIK+YKA S IS IP FSHF
Sbjct: 243 HTIKAYKAFSVISPIPMFSHF 261

[Close]

BLAST of Clc03G05300 vs. ExPASy TrEMBL
Match: A0A6J1EMQ5 (scarecrow-like protein 15 OS=Cucurbita moschata OX=3662 GN=LOC111435916 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 7.5e-17
Identity = 54/81 (66.67%), Postives = 62/81 (76.54%), Query Frame = 0


Query: 30  HNFQLGQVMLERLNQHLQSASSAKLSPVDRGAFFFKEALQSLLSASPNYNNHLYSWLHIV 89
           ++F L  V+LERLN  LQSASSAK  P+ R AFFFKEALQSLLSA+ N +N   SW  IV
Sbjct: 196 NDFHLAHVILERLNHRLQSASSAK--PLHRAAFFFKEALQSLLSAAANRHNSSSSWPDIV 255

Query: 90  HTIKSYKALSAISLIPKFSHF 111
           HTIK++KA SAIS IP FSHF
Sbjct: 256 HTIKAHKAFSAISPIPLFSHF 274

[Close]

BLAST of Clc03G05300 vs. ExPASy TrEMBL
Match: A0A5A7TNJ4 (Scarecrow-like protein 15 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005360 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-16
Identity = 54/81 (66.67%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 30  HNFQLGQVMLERLNQHLQSASSAKLSPVDRGAFFFKEALQSLLSASPNYNNHLYSWLHIV 89
           ++FQL  V+LERLNQ LQS SSAK  P+ R AFF KEALQSLLS S N  N L SW  IV
Sbjct: 159 NDFQLAHVILERLNQRLQSTSSAK--PIHRAAFFIKEALQSLLSPSTNRYNRLSSWSDIV 218

Query: 90  HTIKSYKALSAISLIPKFSHF 111
           HTIK+YKA S+IS I  FSHF
Sbjct: 219 HTIKAYKAFSSISPILMFSHF 237

[Close]

BLAST of Clc03G05300 vs. TAIR 10
Match: AT4G36710.1 (GRAS family transcription factor )

HSP 1 Score: 65.5 bits (158), Expect = 3.6e-11
Identity = 39/78 (50.00%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 33  QLGQVMLERLNQHLQSASSAKLSPVDRGAFFFKEALQSLLSASPNYNNHLYSWLHIVHTI 92
           QL QV+L RLNQ L+S +     P+ R AF+FKEAL S L+ S      L SW  IV  I
Sbjct: 139 QLAQVVLSRLNQRLRSPAG---RPLQRAAFYFKEALGSFLTGSNRNPIRLSSWSEIVQRI 198

Query: 93  KSYKALSAISLIPKFSHF 111
           ++ K  S IS IP FSHF
Sbjct: 199 RAIKEYSGISPIPLFSHF 213

[Close]

BLAST of Clc03G05300 vs. TAIR 10
Match: AT4G00150.1 (GRAS family transcription factor )

HSP 1 Score: 43.9 bits (102), Expect = 1.1e-04
Identity = 31/78 (39.74%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 34  LGQVMLERLNQHLQSASSAKLSPVDRGAFFFKEALQSLL-SASPNYNNHLYSWLHIVHTI 93
           L Q +L RLNQ L   SS    P++R AF+FKEAL +LL + S   N +      ++  I
Sbjct: 222 LAQGILARLNQQL---SSPVGKPLERAAFYFKEALNNLLHNVSQTLNPY-----SLIFKI 281

Query: 94  KSYKALSAISLIPKFSHF 111
            +YK+ S IS + +F++F
Sbjct: 282 AAYKSFSEISPVLQFANF 291

The following BLAST results are available for this feature:

BLAST of Clc03G05300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877286.1	2.2e-18	67.90	scarecrow-like protein 15 [Benincasa hispida]	[more]
XP_008453725.1	4.8e-18	67.90	PREDICTED: scarecrow-like protein 15 [Cucumis melo] >KAA0044759.1 scarecrow-like...	[more]
XP_031740177.1	4.8e-18	67.90	scarecrow-like protein 15 [Cucumis sativus] >KGN53268.1 hypothetical protein Csa...	[more]
XP_038877289.1	4.8e-18	67.90	scarecrow-like protein 15 [Benincasa hispida]	[more]
XP_023552315.1	1.6e-16	66.67	scarecrow-like protein 15 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc03G05300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23210	5.0e-10	50.00	Scarecrow-like protein 15 OS=Arabidopsis thaliana OX=3702 GN=SCL15 PE=1 SV=3	[more]

BLAST of Clc03G05300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D0F2	2.3e-18	67.90	Scarecrow-like protein 15 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0KUN9	2.3e-18	67.90	GRAS family transcription factor OS=Cucumis sativus OX=3659 GN=Csa_4G043840 PE=3...	[more]
A0A1S3BWY3	2.3e-18	67.90	scarecrow-like protein 15 OS=Cucumis melo OX=3656 GN=LOC103494368 PE=3 SV=1	[more]
A0A6J1EMQ5	7.5e-17	66.67	scarecrow-like protein 15 OS=Cucurbita moschata OX=3662 GN=LOC111435916 PE=3 SV=...	[more]
A0A5A7TNJ4	1.3e-16	66.67	Scarecrow-like protein 15 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of Clc03G05300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G36710.1	3.6e-11	50.00	GRAS family transcription factor	[more]
AT4G00150.1	1.1e-04	39.74	GRAS family transcription factor	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005202	Transcription factor GRAS	PFAM	PF03514	GRAS	coord: 30..111 e-value: 4.7E-6 score: 25.8
IPR005202	Transcription factor GRAS	PANTHER	PTHR31636	OSJNBA0084A10.13 PROTEIN-RELATED	coord: 26..110
None	No IPR available	PANTHER	PTHR31636:SF198	SCARECROW-LIKE PROTEIN 15	coord: 26..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G05300.1	Clc03G05300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding