Clc03G05200 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G05200
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	nuclear transport factor 2
Location	ClcChr03: 4976962 .. 4977833 (-)
RNA-Seq Expression	Clc03G05200
Synteny	Clc03G05200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAGATGAGGGTGATATAATTGGGAAGGCTTTTGTGGAACATTATTACCAATTGTTTGATAATGAAAGACCTTCTCTTTCCTCTTTGTACCAACCTGACTCCATGCTCACTTTTGAGGGGCAGCAAATTTTAGGTGTTCATGACATTTCCTCAAAGCTTCAGCAATTGCCATTTGAACGTTGTCGACACATCGTCAGCACCGTCGACACCCAGCCTTCCTCCGTCCCCGGCTCCATCCTCATCTTCGTCAGCGGTAGCCTCCAGCTGCCTGAAGAAGAACACCAACTCAGATTCAGCCAGGTTCCGTTTTATACTCTAACATCATTGCTCTAAATTTATTTAGTTTCTTTTTTCAAATTGCTTCATCTATATCTATATACCATTTTAAACTTTCAATTACGTATTTTTATAGACTTTTGTAGTTTTGTAAATTCACCCATTTATATTTGTAAATAAGTTAGTAATTAAATTTTAGTTTTAAAAGTATGAGGGACTAAAATCTTAATTTTAACTAATTAAATTTAATTGCACAAGTAGTGAATTTAATATTGGTTAAAACATTGTTTTTGTCACTGCTTTTTTTTAGTCATGTTAAATCCCTACTATTACTCGGGTTTCACAGTGTCAAACGTTTTGCAAATAATTGTTTAATTTTCGATGAAAATTAATTTATTTTGAGATTTATTGAGAGCATATAAACTAAGTTTAGCATTTAAAATATATAATTAAAATAGATTGTAAGCTTTAATATTTGATTCACATTTTGAAGAAAATAAAAAATTTGGTTGCAGATGTTTCACTTGGTACCTTCGCCACAAGGCAACCTTTTCGTTCAGAACGATATTTTCCGGCTCAATTACGGTTAA

mRNA sequence

ATGGAAGAAGATGAGGGTGATATAATTGGGAAGGCTTTTGTGGAACATTATTACCAATTGTTTGATAATGAAAGACCTTCTCTTTCCTCTTTGTACCAACCTGACTCCATGCTCACTTTTGAGGGGCAGCAAATTTTAGGTGTTCATGACATTTCCTCAAAGCTTCAGCAATTGCCATTTGAACGTTGTCGACACATCGTCAGCACCGTCGACACCCAGCCTTCCTCCGTCCCCGGCTCCATCCTCATCTTCGTCAGCGGTAGCCTCCAGCTGCCTGAAGAAGAACACCAACTCAGATTCAGCCAGATGTTTCACTTGGTACCTTCGCCACAAGGCAACCTTTTCGTTCAGAACGATATTTTCCGGCTCAATTACGGTTAA

Coding sequence (CDS)

ATGGAAGAAGATGAGGGTGATATAATTGGGAAGGCTTTTGTGGAACATTATTACCAATTGTTTGATAATGAAAGACCTTCTCTTTCCTCTTTGTACCAACCTGACTCCATGCTCACTTTTGAGGGGCAGCAAATTTTAGGTGTTCATGACATTTCCTCAAAGCTTCAGCAATTGCCATTTGAACGTTGTCGACACATCGTCAGCACCGTCGACACCCAGCCTTCCTCCGTCCCCGGCTCCATCCTCATCTTCGTCAGCGGTAGCCTCCAGCTGCCTGAAGAAGAACACCAACTCAGATTCAGCCAGATGTTTCACTTGGTACCTTCGCCACAAGGCAACCTTTTCGTTCAGAACGATATTTTCCGGCTCAATTACGGTTAA

Protein sequence

MEEDEGDIIGKAFVEHYYQLFDNERPSLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHIVSTVDTQPSSVPGSILIFVSGSLQLPEEEHQLRFSQMFHLVPSPQGNLFVQNDIFRLNYG

Homology

[Close]

BLAST of Clc03G05200 vs. NCBI nr
Match: XP_008441397.1 (PREDICTED: nuclear transport factor 2 [Cucumis melo])

HSP 1 Score: 240.0 bits (611), Expect = 1.1e-59
Identity = 113/126 (89.68%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MEEDEGDIIGKAFVEHYYQLFDNERPSLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPF 60
           MEE++GDIIGKAFVEHYY LFDNER SLSSLYQPDSMLTFEGQQILGV+DIS+KLQQLPF
Sbjct: 1   MEEEQGDIIGKAFVEHYYHLFDNERASLSSLYQPDSMLTFEGQQILGVNDISTKLQQLPF 60

Query: 61  ERCRHIVSTVDTQPSSVPGSILIFVSGSLQLPEEEHQLRFSQMFHLVPSPQGNLFVQNDI 120
           ERCRH+VST+DTQPSSVPGSILIFVSGS+++PEEEH LR+SQMFHLVPSPQGNLFVQNDI
Sbjct: 61  ERCRHVVSTIDTQPSSVPGSILIFVSGSIEIPEEEHPLRYSQMFHLVPSPQGNLFVQNDI 120

Query: 121 FRLNYG 127
           FRLNYG
Sbjct: 121 FRLNYG 126

[Close]

BLAST of Clc03G05200 vs. NCBI nr
Match: XP_004153658.1 (nuclear transport factor 2B [Cucumis sativus] >KGN64547.1 hypothetical protein Csa_013836 [Cucumis sativus])

HSP 1 Score: 239.6 bits (610), Expect = 1.5e-59
Identity = 114/124 (91.94%), Postives = 121/124 (97.58%), Query Frame = 0


Query: 3   EDEGDIIGKAFVEHYYQLFDNERPSLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFER 62
           E+EGDIIGKAFVEHYYQLFDNER SLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFER
Sbjct: 2   EEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFER 61

Query: 63  CRHIVSTVDTQPSSVPGSILIFVSGSLQLPEEEHQLRFSQMFHLVPSPQGNLFVQNDIFR 122
           CRH+VST+DTQPSSV GSILIFVSGS+++PEEEH LRFSQMFHLVPSP+GNLFVQNDIFR
Sbjct: 62  CRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIFR 121

Query: 123 LNYG 127
           LNYG
Sbjct: 122 LNYG 125

[Close]

BLAST of Clc03G05200 vs. NCBI nr
Match: XP_023001318.1 (nuclear transport factor 2B [Cucurbita maxima])

HSP 1 Score: 235.7 bits (600), Expect = 2.1e-58
Identity = 111/124 (89.52%), Postives = 120/124 (96.77%), Query Frame = 0


Query: 3   EDEGDIIGKAFVEHYYQLFDNERPSLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFER 62
           E+E DI+GKAFVEHYYQLFDNERPSLS+LYQPDSMLTFEGQQILGVHDISS+LQQLPFER
Sbjct: 2   EEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVHDISSRLQQLPFER 61

Query: 63  CRHIVSTVDTQPSSVPGSILIFVSGSLQLPEEEHQLRFSQMFHLVPSPQGNLFVQNDIFR 122
           CRH+VSTVDTQPS+VPGSILIFVSGSL+LPEEEH LRFSQMFHLVP+ QGNL +QNDIFR
Sbjct: 62  CRHVVSTVDTQPSAVPGSILIFVSGSLELPEEEHHLRFSQMFHLVPTAQGNLCIQNDIFR 121

Query: 123 LNYG 127
           LNYG
Sbjct: 122 LNYG 125

[Close]

BLAST of Clc03G05200 vs. NCBI nr
Match: XP_023519037.1 (nuclear transport factor 2B [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231.9 bits (590), Expect = 3.1e-57
Identity = 111/124 (89.52%), Postives = 119/124 (95.97%), Query Frame = 0


Query: 3   EDEGDIIGKAFVEHYYQLFDNERPSLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFER 62
           E+E DI+GKAFVEHYYQLFDNERPSLS+LYQPDSMLTFEGQQILGV DISS+LQQLPFER
Sbjct: 2   EEETDIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFER 61

Query: 63  CRHIVSTVDTQPSSVPGSILIFVSGSLQLPEEEHQLRFSQMFHLVPSPQGNLFVQNDIFR 122
           CRH+VSTVDTQPS+VPGSILIFVSGSL+LPEEEH LRFSQMFHLVP+ QGNL VQNDIFR
Sbjct: 62  CRHVVSTVDTQPSAVPGSILIFVSGSLELPEEEHHLRFSQMFHLVPTAQGNLCVQNDIFR 121

Query: 123 LNYG 127
           LNYG
Sbjct: 122 LNYG 125

[Close]

BLAST of Clc03G05200 vs. NCBI nr
Match: XP_038895004.1 (nuclear transport factor 2B [Benincasa hispida])

HSP 1 Score: 231.9 bits (590), Expect = 3.1e-57
Identity = 114/124 (91.94%), Postives = 118/124 (95.16%), Query Frame = 0


Query: 3   EDEGDIIGKAFVEHYYQLFDNERPSLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFER 62
           E+E DIIGKAFVEHYYQLFDNER SLSSLYQPDSMLTFEGQQILGV DISSKLQQLPFER
Sbjct: 2   EEEADIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFER 61

Query: 63  CRHIVSTVDTQPSSVPGSILIFVSGSLQLPEEEHQLRFSQMFHLVPSPQGNLFVQNDIFR 122
            RHIVST+DTQPSSV GS LIFVSGSL+LPEEEHQLRFSQMFHLVPSPQGNLFVQN+IFR
Sbjct: 62  SRHIVSTIDTQPSSVLGSFLIFVSGSLELPEEEHQLRFSQMFHLVPSPQGNLFVQNEIFR 121

Query: 123 LNYG 127
           LNYG
Sbjct: 122 LNYG 125

[Close]

BLAST of Clc03G05200 vs. ExPASy Swiss-Prot
Match: Q9C7F5 (Nuclear transport factor 2B OS=Arabidopsis thaliana OX=3702 GN=NTF2B PE=1 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.0e-38
Identity = 75/125 (60.00%), Postives = 93/125 (74.40%), Query Frame = 0


Query: 1   MEEDEGDIIGKAFVEHYYQLFDNERPSLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPF 60
           M + + D + KAFVEHYY  FD  R  L+ LYQ  SMLTFEGQ+I GV  I +KL  LPF
Sbjct: 1   MSQMDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPF 60

Query: 61  ERCRHIVSTVDTQPSSVPGSILIFVSGSLQLPEEEHQLRFSQMFHLVPSPQGNLFVQNDI 120
           ++C+H +STVD QPS     +L+FVSG+LQL  EEH L+FSQMFHL+P+PQG+ +V NDI
Sbjct: 61  QQCKHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDI 120

Query: 121 FRLNY 126
           FRLNY
Sbjct: 121 FRLNY 125

[Close]

BLAST of Clc03G05200 vs. ExPASy Swiss-Prot
Match: Q9XJ54 (Nuclear transport factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=NTF2 PE=2 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.4e-36
Identity = 73/122 (59.84%), Postives = 90/122 (73.77%), Query Frame = 0


Query: 5   EGDIIGKAFVEHYYQLFDNERPSLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCR 64
           + D + KAFVEHYY+ FD  RP+L SLYQ  SMLTFEGQQ LG   I+ KL  LPF +C 
Sbjct: 2   DADAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQFLGAAAIAGKLGSLPFAQCH 61

Query: 65  HIVSTVDTQPSSVPGSILIFVSGSLQLPEEEHQLRFSQMFHLVPSPQGNLFVQNDIFRLN 124
           H ++TVD QPS   G +L+FVSGSL+   +EH L+FSQMF L+P+  GN +VQND+FRLN
Sbjct: 62  HDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPA-GGNFYVQNDMFRLN 121

Query: 125 YG 127
           YG
Sbjct: 122 YG 122

[Close]

BLAST of Clc03G05200 vs. ExPASy Swiss-Prot
Match: Q9FZK4 (Nuclear transport factor 2A OS=Arabidopsis thaliana OX=3702 GN=NTF2A PE=1 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 4.1e-36
Identity = 74/119 (62.18%), Postives = 90/119 (75.63%), Query Frame = 0


Query: 7   DIIGKAFVEHYYQLFDNERPSLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHI 66
           D + KAFVEHYY  FD  RP L SLYQ  SMLTFEGQ+I G  +I +KL  LPF++C+H 
Sbjct: 4   DAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQCKHN 63

Query: 67  VSTVDTQPSSVPGSILIFVSGSLQLPEEEHQLRFSQMFHLVPSPQGNLFVQNDIFRLNY 126
           ++TVD QPS   G +L+FVSG+LQL  E+H L+FSQMFHL+ S QGN +V NDIFRLNY
Sbjct: 64  ITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLI-SNQGNYYVFNDIFRLNY 121

[Close]

BLAST of Clc03G05200 vs. ExPASy Swiss-Prot
Match: Q10100 (Nuclear transport factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ntf2 PE=3 SV=2)

HSP 1 Score: 124.4 bits (311), Expect = 9.1e-28
Identity = 59/114 (51.75%), Postives = 81/114 (71.05%), Query Frame = 0


Query: 13  FVEHYYQLFDNERPSLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHIVSTVDT 72
           F + YYQ FD++R  LSSLY+ +SML+FEG Q+ G   I  KL  LPF+R +H +ST+D 
Sbjct: 11  FTQFYYQTFDSDRSQLSSLYREESMLSFEGAQLQGTKAIVEKLVSLPFQRVQHRISTLDA 70

Query: 73  QPSSVPGSILIFVSGSLQLPEEEHQLRFSQMFHLVPSPQGNLFVQNDIFRLNYG 127
           QP+   GS+++ V+G L L EE+   R+SQ+FHLV +  GN +V ND+FRLNYG
Sbjct: 71  QPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLV-NNNGNYYVLNDLFRLNYG 123

[Close]

BLAST of Clc03G05200 vs. ExPASy Swiss-Prot
Match: Q9P926 (Nuclear transport factor 2 OS=Candida albicans OX=5476 GN=NTF2 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.9e-26
Identity = 56/117 (47.86%), Postives = 78/117 (66.67%), Query Frame = 0


Query: 9   IGKAFVEHYYQLFDNERPSLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHIVS 68
           +   F   YY  FD++R  L +LY+ +SMLTFE  Q+ G  DI  KL  LPF++  H +S
Sbjct: 8   VATEFCNFYYNQFDSDRSQLGNLYRNESMLTFETSQLQGARDIVEKLASLPFQKVAHRIS 67

Query: 69  TVDTQPSSVPGSILIFVSGSLQLPEEEHQLRFSQMFHLVPSPQGNLFVQNDIFRLNY 126
           T+D QP+S  G IL+ V+G L + EE++  R+SQ+FHL+P   G+ +V NDIFRLNY
Sbjct: 68  TLDAQPASANGDILVMVTGELLIDEEQNAQRYSQVFHLIPD-NGSYYVFNDIFRLNY 123

[Close]

BLAST of Clc03G05200 vs. ExPASy TrEMBL
Match: A0A1S3B3B7 (nuclear transport factor 2 OS=Cucumis melo OX=3656 GN=LOC103485524 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 5.5e-60
Identity = 113/126 (89.68%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MEEDEGDIIGKAFVEHYYQLFDNERPSLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPF 60
           MEE++GDIIGKAFVEHYY LFDNER SLSSLYQPDSMLTFEGQQILGV+DIS+KLQQLPF
Sbjct: 1   MEEEQGDIIGKAFVEHYYHLFDNERASLSSLYQPDSMLTFEGQQILGVNDISTKLQQLPF 60

Query: 61  ERCRHIVSTVDTQPSSVPGSILIFVSGSLQLPEEEHQLRFSQMFHLVPSPQGNLFVQNDI 120
           ERCRH+VST+DTQPSSVPGSILIFVSGS+++PEEEH LR+SQMFHLVPSPQGNLFVQNDI
Sbjct: 61  ERCRHVVSTIDTQPSSVPGSILIFVSGSIEIPEEEHPLRYSQMFHLVPSPQGNLFVQNDI 120

Query: 121 FRLNYG 127
           FRLNYG
Sbjct: 121 FRLNYG 126

[Close]

BLAST of Clc03G05200 vs. ExPASy TrEMBL
Match: A0A0A0LUU9 (NTF2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G064690 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 7.2e-60
Identity = 114/124 (91.94%), Postives = 121/124 (97.58%), Query Frame = 0


Query: 3   EDEGDIIGKAFVEHYYQLFDNERPSLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFER 62
           E+EGDIIGKAFVEHYYQLFDNER SLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFER
Sbjct: 2   EEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFER 61

Query: 63  CRHIVSTVDTQPSSVPGSILIFVSGSLQLPEEEHQLRFSQMFHLVPSPQGNLFVQNDIFR 122
           CRH+VST+DTQPSSV GSILIFVSGS+++PEEEH LRFSQMFHLVPSP+GNLFVQNDIFR
Sbjct: 62  CRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIFR 121

Query: 123 LNYG 127
           LNYG
Sbjct: 122 LNYG 125

[Close]

BLAST of Clc03G05200 vs. ExPASy TrEMBL
Match: A0A6J1KQ62 (nuclear transport factor 2B OS=Cucurbita maxima OX=3661 GN=LOC111495482 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.0e-58
Identity = 111/124 (89.52%), Postives = 120/124 (96.77%), Query Frame = 0


Query: 3   EDEGDIIGKAFVEHYYQLFDNERPSLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFER 62
           E+E DI+GKAFVEHYYQLFDNERPSLS+LYQPDSMLTFEGQQILGVHDISS+LQQLPFER
Sbjct: 2   EEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVHDISSRLQQLPFER 61

Query: 63  CRHIVSTVDTQPSSVPGSILIFVSGSLQLPEEEHQLRFSQMFHLVPSPQGNLFVQNDIFR 122
           CRH+VSTVDTQPS+VPGSILIFVSGSL+LPEEEH LRFSQMFHLVP+ QGNL +QNDIFR
Sbjct: 62  CRHVVSTVDTQPSAVPGSILIFVSGSLELPEEEHHLRFSQMFHLVPTAQGNLCIQNDIFR 121

Query: 123 LNYG 127
           LNYG
Sbjct: 122 LNYG 125

[Close]

BLAST of Clc03G05200 vs. ExPASy TrEMBL
Match: A0A6J1F427 (nuclear transport factor 2B OS=Cucurbita moschata OX=3662 GN=LOC111440050 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.0e-57
Identity = 110/124 (88.71%), Postives = 119/124 (95.97%), Query Frame = 0


Query: 3   EDEGDIIGKAFVEHYYQLFDNERPSLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFER 62
           E+E DI+GKAFVEHYYQLFDNERPSLS+LYQPDSMLTFEGQQILGV DISS+LQQLPFER
Sbjct: 2   EEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFER 61

Query: 63  CRHIVSTVDTQPSSVPGSILIFVSGSLQLPEEEHQLRFSQMFHLVPSPQGNLFVQNDIFR 122
           CRH+VSTVDTQPS+VPGSILIFVSGSL+LP+EEH LRFSQMFHLVP+ QGNL VQNDIFR
Sbjct: 62  CRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFSQMFHLVPTAQGNLCVQNDIFR 121

Query: 123 LNYG 127
           LNYG
Sbjct: 122 LNYG 125

[Close]

BLAST of Clc03G05200 vs. ExPASy TrEMBL
Match: A0A6J1CEC9 (nuclear transport factor 2 OS=Momordica charantia OX=3673 GN=LOC111010728 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 6.5e-53
Identity = 101/124 (81.45%), Postives = 117/124 (94.35%), Query Frame = 0


Query: 3   EDEGDIIGKAFVEHYYQLFDNERPSLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFER 62
           E+E +++G+AFVEHYYQLFDNER S+SSLYQP+SMLTFEGQ+ILGV DISS+LQQLPFER
Sbjct: 2   EEESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFER 61

Query: 63  CRHIVSTVDTQPSSVPGSILIFVSGSLQLPEEEHQLRFSQMFHLVPSPQGNLFVQNDIFR 122
           CRH+VST+DTQPS+  GS+LIFVSGSL+LP EEHQLRFSQMFHLVP+ QG+LFVQNDIFR
Sbjct: 62  CRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFSQMFHLVPTSQGSLFVQNDIFR 121

Query: 123 LNYG 127
           LNYG
Sbjct: 122 LNYG 125

[Close]

BLAST of Clc03G05200 vs. TAIR 10
Match: AT1G11570.2 (NTF2-like )

HSP 1 Score: 167.9 bits (424), Expect = 5.1e-42
Identity = 79/121 (65.29%), Postives = 98/121 (80.99%), Query Frame = 0


Query: 9   IGKAFVEHYYQLFDNERPSLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHIVS 68
           +  AFV HYY LFDN+R SLSSLY P S+LTFEGQ I GV +IS+KL+QLPF++C H++S
Sbjct: 12  VASAFVNHYYHLFDNDRSSLSSLYNPTSLLTFEGQTIYGVDNISNKLKQLPFDQCHHLIS 71

Query: 69  TVDTQPSSVP---GSILIFVSGSLQLPEEEHQLRFSQMFHLVPSPQGNLFVQNDIFRLNY 127
           TVD+QPSS+    G IL+FVSGS+QL  E+H LRFSQ FHL+P  QG+ FVQN++FRLNY
Sbjct: 72  TVDSQPSSMAGGCGGILVFVSGSIQLHGEDHPLRFSQTFHLIPVLQGSFFVQNEMFRLNY 131

[Close]

BLAST of Clc03G05200 vs. TAIR 10
Match: AT1G27970.1 (nuclear transport factor 2B )

HSP 1 Score: 159.8 bits (403), Expect = 1.4e-39
Identity = 75/125 (60.00%), Postives = 93/125 (74.40%), Query Frame = 0


Query: 1   MEEDEGDIIGKAFVEHYYQLFDNERPSLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPF 60
           M + + D + KAFVEHYY  FD  R  L+ LYQ  SMLTFEGQ+I GV  I +KL  LPF
Sbjct: 1   MSQMDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPF 60

Query: 61  ERCRHIVSTVDTQPSSVPGSILIFVSGSLQLPEEEHQLRFSQMFHLVPSPQGNLFVQNDI 120
           ++C+H +STVD QPS     +L+FVSG+LQL  EEH L+FSQMFHL+P+PQG+ +V NDI
Sbjct: 61  QQCKHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDI 120

Query: 121 FRLNY 126
           FRLNY
Sbjct: 121 FRLNY 125

[Close]

BLAST of Clc03G05200 vs. TAIR 10
Match: AT1G27310.1 (nuclear transport factor 2A )

HSP 1 Score: 152.1 bits (383), Expect = 2.9e-37
Identity = 74/119 (62.18%), Postives = 90/119 (75.63%), Query Frame = 0


Query: 7   DIIGKAFVEHYYQLFDNERPSLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHI 66
           D + KAFVEHYY  FD  RP L SLYQ  SMLTFEGQ+I G  +I +KL  LPF++C+H 
Sbjct: 4   DAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQCKHN 63

Query: 67  VSTVDTQPSSVPGSILIFVSGSLQLPEEEHQLRFSQMFHLVPSPQGNLFVQNDIFRLNY 126
           ++TVD QPS   G +L+FVSG+LQL  E+H L+FSQMFHL+ S QGN +V NDIFRLNY
Sbjct: 64  ITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLI-SNQGNYYVFNDIFRLNY 121

[Close]

BLAST of Clc03G05200 vs. TAIR 10
Match: AT1G27970.2 (nuclear transport factor 2B )

HSP 1 Score: 151.0 bits (380), Expect = 6.5e-37
Identity = 71/121 (58.68%), Postives = 89/121 (73.55%), Query Frame = 0


Query: 1   MEEDEGDIIGKAFVEHYYQLFDNERPSLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPF 60
           M + + D + KAFVEHYY  FD  R  L+ LYQ  SMLTFEGQ+I GV  I +KL  LPF
Sbjct: 1   MSQMDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPF 60

Query: 61  ERCRHIVSTVDTQPSSVPGSILIFVSGSLQLPEEEHQLRFSQMFHLVPSPQGNLFVQNDI 120
           ++C+H +STVD QPS     +L+FVSG+LQL  EEH L+FSQMFHL+P+PQG+ +V NDI
Sbjct: 61  QQCKHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDI 120

Query: 121 F 122
           F
Sbjct: 121 F 121

[Close]

BLAST of Clc03G05200 vs. TAIR 10
Match: AT1G11570.1 (NTF2-like )

HSP 1 Score: 133.3 bits (334), Expect = 1.4e-31
Identity = 64/101 (63.37%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 9   IGKAFVEHYYQLFDNERPSLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHIVS 68
           +  AFV HYY LFDN+R SLSSLY P S+LTFEGQ I GV +IS+KL+QLPF++C H++S
Sbjct: 12  VASAFVNHYYHLFDNDRSSLSSLYNPTSLLTFEGQTIYGVDNISNKLKQLPFDQCHHLIS 71

Query: 69  TVDTQPSSVP---GSILIFVSGSLQLPEEEHQLRFSQMFHL 107
           TVD+QPSS+    G IL+FVSGS+QL  E+H LRFSQ++ L
Sbjct: 72  TVDSQPSSMAGGCGGILVFVSGSIQLHGEDHPLRFSQVYLL 112

The following BLAST results are available for this feature:

BLAST of Clc03G05200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441397.1	1.1e-59	89.68	PREDICTED: nuclear transport factor 2 [Cucumis melo]	[more]
XP_004153658.1	1.5e-59	91.94	nuclear transport factor 2B [Cucumis sativus] >KGN64547.1 hypothetical protein C...	[more]
XP_023001318.1	2.1e-58	89.52	nuclear transport factor 2B [Cucurbita maxima]	[more]
XP_023519037.1	3.1e-57	89.52	nuclear transport factor 2B [Cucurbita pepo subsp. pepo]	[more]
XP_038895004.1	3.1e-57	91.94	nuclear transport factor 2B [Benincasa hispida]	[more]

BLAST of Clc03G05200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C7F5	2.0e-38	60.00	Nuclear transport factor 2B OS=Arabidopsis thaliana OX=3702 GN=NTF2B PE=1 SV=1	[more]
Q9XJ54	2.4e-36	59.84	Nuclear transport factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=NTF2 PE=2...	[more]
Q9FZK4	4.1e-36	62.18	Nuclear transport factor 2A OS=Arabidopsis thaliana OX=3702 GN=NTF2A PE=1 SV=1	[more]
Q10100	9.1e-28	51.75	Nuclear transport factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843...	[more]
Q9P926	2.9e-26	47.86	Nuclear transport factor 2 OS=Candida albicans OX=5476 GN=NTF2 PE=3 SV=1	[more]

BLAST of Clc03G05200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B3B7	5.5e-60	89.68	nuclear transport factor 2 OS=Cucumis melo OX=3656 GN=LOC103485524 PE=4 SV=1	[more]
A0A0A0LUU9	7.2e-60	91.94	NTF2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G064690 PE=4 S...	[more]
A0A6J1KQ62	1.0e-58	89.52	nuclear transport factor 2B OS=Cucurbita maxima OX=3661 GN=LOC111495482 PE=4 SV=...	[more]
A0A6J1F427	2.0e-57	88.71	nuclear transport factor 2B OS=Cucurbita moschata OX=3662 GN=LOC111440050 PE=4 S...	[more]
A0A6J1CEC9	6.5e-53	81.45	nuclear transport factor 2 OS=Momordica charantia OX=3673 GN=LOC111010728 PE=4 S...	[more]

BLAST of Clc03G05200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11570.2	5.1e-42	65.29	NTF2-like	[more]
AT1G27970.1	1.4e-39	60.00	nuclear transport factor 2B	[more]
AT1G27310.1	2.9e-37	62.18	nuclear transport factor 2A	[more]
AT1G27970.2	6.5e-37	58.68	nuclear transport factor 2B	[more]
AT1G11570.1	1.4e-31	63.37	NTF2-like	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.50		coord: 2..126 e-value: 2.1E-40 score: 139.7
None	No IPR available	PANTHER	PTHR12612:SF29	NTF2-LIKE PROTEIN	coord: 5..126
None	No IPR available	PANTHER	PTHR12612	NUCLEAR TRANSPORT FACTOR 2	coord: 5..126
IPR002075	Nuclear transport factor 2	PFAM	PF02136	NTF2	coord: 9..123 e-value: 4.7E-33 score: 114.3
IPR018222	Nuclear transport factor 2, eukaryote	PROSITE	PS50177	NTF2_DOMAIN	coord: 9..123 score: 31.891287
IPR018222	Nuclear transport factor 2, eukaryote	CDD	cd00780	NTF2	coord: 6..125 e-value: 9.22815E-41 score: 129.71
IPR032710	NTF2-like domain superfamily	SUPERFAMILY	54427	NTF2-like	coord: 9..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G05200.1	Clc03G05200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006913	nucleocytoplasmic transport
cellular_component	GO:0044613	nuclear pore central transport channel