Clc03G03050 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G03050
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	transcription factor MYB36-like
Location	ClcChr03: 3035456 .. 3036753 (-)
RNA-Seq Expression	Clc03G03050
Synteny	Clc03G03050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGATCTCCTTGTTGTGATAAGAGTATTGTGAAGAAGGGTCCTTGGTCTCCTGAAGAAGATGCTAAGCTCAAAGATTATATTGACAAGAATGGCACTGGTGGGAATTGGATCTCTCTCCCTCAAAAAGCTGGTAAAATATTATTACTCAAAAATTTCCCCATTTTTTTAGGGTTTTTTTCTTTTCTTTTCAAATGGGGTTTTAGGGTTTTTTCCCCTTCAAATGGGTTTTTAGGGTTTTGAATTGTTCTTTCTCTAAGTAGGGTTTTGAGTACATTTGTTTTCTCTTTGTAAAATGGGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCATTTGGTGTGAATATTTTTGGAAGGTTTGAAGAGATGTGGGAAGAGTTGTAGGTTGAGATGGCTTAACTATTTGAGGCCTAACATTAAACATGGAGGATTCACTGAAGAGGAAGATAGAATAATTTGTACTCTTTTTTCCACCATTGGAAGCAGGTACTTTCATTTATATAATCTTAATTATTATTTTATTAATTAATCAAACTCACATGGCCTTTTAACCCCTTTATTTAGATTTAATTTATTCTTCTTTGCATGCATTTCTTCATTATCCTTATGTTAACAGTATGTGTGTATAATAATTTCTCAAAAAAAAAAAAAAAAAAAAAAGGAAGAAGAAGAAGTGTATAAACATTTAAATTTACCCTAAACTAGCTTGTAACCATTAGTATTTAACAATAATATTAGAGCAAAGTATAACTTATATACAGTATGCATTTGATCGAACTTGTGGATTAATATTTAAGCTCACGAGTGATAGATTGAGTACCTATAAAACAAAACCTTTTTAGGGTTTTTTTTTTTCCTTTCTTCTTCTTATGGATCTAGGTCAAGAATTTACAGGTGGTCGATAATCGCGACACAATTACCAGGAAGAACAGACAACGACATCAAGAATCATTGGAACAGCAAACTAAAGAGGAAGCTTATAGGAATGGAGAAGAAAGGCCAAATGACCACCAACACCACCACCATGACCATACCATCTTCTCATAATCATCATCAACAAGTTTTTTCATCATTTTCATCTCAACCACTCTCATCCCTAATTTACAAAGATGAATTCAATGATATTAATTATTACAACAACAGCTTTTCCCCTCCTTCAACAACAGCAATCAGAAACTTTGAAACTCTCATTTCATCAATCCCATCAAATTGGTCAAACTTCCAAATTACAAACAACATTAGCCCTTGTCTTGTCCAAACACAAGAAAACCAACAACTTATTGAGTAA

mRNA sequence

atgggaagatctccttgttgtgataagagtattgtgaagaagggtccttggtctcctgaagaagatgctaagctcaaagattatattgacaagaatggcactggtgggaattggatctctctccctcaaaaagctggtttgaagagatgtgggaagagttgtaggttgagatggcttaactatttgaggcctaacattaaacatggaggattcactgaagaggaagatagaataatttgtactcttttttccaccattggaagcaggtggtcgataatcgcgacacaattaccaggaagaacagacaacgacatcaagaatcattggaacagcaaactaaagaggaagcttataggaatggagaagaaaggccaaatgaccaccaacaccaccaccatgaccataccatcttctcataatcatcatcaacaagttttttcatcattttcatctcaaccactctcatccctaatttacaaagatgaattcaatgatattaattattacaacaacagcttttcccctccttcaacaacagcaatcagaaaCTTTGAAACTCTCATTTCATCAATCCCATCAAATTGGTCAAACTTCCAAATTACAAACAACATTAGCCCTTGTCTTGTCCAAACACAAGAAAACCAACAACTTATTGAGTAA

Coding sequence (CDS)

ATGGGAAGATCTCCTTGTTGTGATAAGAGTATTGTGAAGAAGGGTCCTTGGTCTCCTGAAGAAGATGCTAAGCTCAAAGATTATATTGACAAGAATGGCACTGGTGGGAATTGGATCTCTCTCCCTCAAAAAGCTGGTTTGAAGAGATGTGGGAAGAGTTGTAGGTTGAGATGGCTTAACTATTTGAGGCCTAACATTAAACATGGAGGATTCACTGAAGAGGAAGATAGAATAATTTGTACTCTTTTTTCCACCATTGGAAGCAGGTGGTCGATAATCGCGACACAATTACCAGGAAGAACAGACAACGACATCAAGAATCATTGGAACAGCAAACTAAAGAGGAAGCTTATAGGAATGGAGAAGAAAGGCCAAATGACCACCAACACCACCACCATGACCATACCATCTTCTCATAATCATCATCAACAAGTTTTTTCATCATTTTCATCTCAACCACTCTCATCCCTAATTTACAAAGATGAATTCAATGATATTAATTATTACAACAACAGCTTTTCCCCTCCTTCAACAACAGCAATCAGAAACTTTGAAACTCTCATTTCATCAATCCCATCAAATTGGTCAAACTTCCAAATTACAAACAACATTAGCCCTTGTCTTGTCCAAACACAAGAAAACCAACAACTTATTGAGTAA

Protein sequence

MGRSPCCDKSIVKKGPWSPEEDAKLKDYIDKNGTGGNWISLPQKAGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKRKLIGMEKKGQMTTNTTTMTIPSSHNHHQQVFSSFSSQPLSSLIYKDEFNDINYYNNSFSPPSTTAIRNFETLISSIPSNWSNFQITNNISPCLVQTQENQQLIE

Homology

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BLAST of Clc03G03050 vs. NCBI nr
Match: XP_038895741.1 (transcription factor RAX2-like [Benincasa hispida])

HSP 1 Score: 374.4 bits (960), Expect = 6.7e-100
Identity = 185/219 (84.47%), Postives = 194/219 (88.58%), Query Frame = 0


Query: 1   MGRSPCCDKSIVKKGPWSPEEDAKLKDYIDKNGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGRSPCCDKS VKKGPWSPEEDAKLKDYI+KNGTGGNWISLPQKAGLKRCGKSCRLRWLN
Sbjct: 1   MGRSPCCDKSNVKKGPWSPEEDAKLKDYIEKNGTGGNWISLPQKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKRKLIGM 120
           YLRPNIKHGGFT+EEDRII TLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKRKLIGM
Sbjct: 61  YLRPNIKHGGFTDEEDRIIYTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKRKLIGM 120

Query: 121 EKKGQMTTNTTTMTIPSSHNHHQQVFSSFSSQPLSSLIYKDEFNDINYYNNSFSPPSTTA 180
           EKK QMTT  T  T PS   +H+Q+FSSFSSQPLSSL Y D  NDINYYNN+ SPPST  
Sbjct: 121 EKKAQMTTTIT--TTPSYSRNHEQIFSSFSSQPLSSLNYTDNLNDINYYNNNLSPPSTIT 180

Query: 181 IRNFETLISS-IPSNWSNFQITNN-----ISPCLVQTQE 214
           +++FE LISS IPSNWSNFQITNN     ISPCLVQTQE
Sbjct: 181 MKSFENLISSNIPSNWSNFQITNNNNNNIISPCLVQTQE 217

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BLAST of Clc03G03050 vs. NCBI nr
Match: XP_031736008.1 (transcription factor MYB36-like [Cucumis sativus])

HSP 1 Score: 359.0 bits (920), Expect = 2.9e-95
Identity = 182/221 (82.35%), Postives = 193/221 (87.33%), Query Frame = 0


Query: 1   MGRSPCCDKSIVKKGPWSPEEDAKLKDYIDKNGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGRSPCCDKS VKKGPWSPEEDAKLKD+IDKNGTGGNWISLPQKAGLKRCGKSCRLRWLN
Sbjct: 1   MGRSPCCDKSNVKKGPWSPEEDAKLKDFIDKNGTGGNWISLPQKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKRKLIGM 120
           YLRPNIKHGGFT+EEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKRKLI M
Sbjct: 61  YLRPNIKHGGFTDEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKRKLIEM 120

Query: 121 EKKGQMTTNTTTMTIPSSHN-HHQQVFSSFSSQPLSSLIYK--DEFNDINYYNNSFSPPS 180
           EKK Q+   TT+ TIPSSHN HH Q+FSSFSSQPLSSLI K  D FNDINY N + S P 
Sbjct: 121 EKKAQI---TTSRTIPSSHNHHHHQIFSSFSSQPLSSLINKHDDYFNDINYSNYNLSSPP 180

Query: 181 TTAIRNFETLISSIPSNWSNFQITNNISPCLVQTQENQQLI 219
           TT I++FE+LISSIPSNWSN     + SPCLVQTQE   L+
Sbjct: 181 TT-IKSFESLISSIPSNWSNNNNNISPSPCLVQTQETTNLL 217

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BLAST of Clc03G03050 vs. NCBI nr
Match: KAE8652761.1 (hypothetical protein Csa_014020, partial [Cucumis sativus])

HSP 1 Score: 359.0 bits (920), Expect = 2.9e-95
Identity = 182/221 (82.35%), Postives = 193/221 (87.33%), Query Frame = 0


Query: 1   MGRSPCCDKSIVKKGPWSPEEDAKLKDYIDKNGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGRSPCCDKS VKKGPWSPEEDAKLKD+IDKNGTGGNWISLPQKAGLKRCGKSCRLRWLN
Sbjct: 5   MGRSPCCDKSNVKKGPWSPEEDAKLKDFIDKNGTGGNWISLPQKAGLKRCGKSCRLRWLN 64

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKRKLIGM 120
           YLRPNIKHGGFT+EEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKRKLI M
Sbjct: 65  YLRPNIKHGGFTDEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKRKLIEM 124

Query: 121 EKKGQMTTNTTTMTIPSSHN-HHQQVFSSFSSQPLSSLIYK--DEFNDINYYNNSFSPPS 180
           EKK Q+   TT+ TIPSSHN HH Q+FSSFSSQPLSSLI K  D FNDINY N + S P 
Sbjct: 125 EKKAQI---TTSRTIPSSHNHHHHQIFSSFSSQPLSSLINKHDDYFNDINYSNYNLSSPP 184

Query: 181 TTAIRNFETLISSIPSNWSNFQITNNISPCLVQTQENQQLI 219
           TT I++FE+LISSIPSNWSN     + SPCLVQTQE   L+
Sbjct: 185 TT-IKSFESLISSIPSNWSNNNNNISPSPCLVQTQETTNLL 221

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BLAST of Clc03G03050 vs. NCBI nr
Match: XP_023520293.1 (transcription factor MYB87-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 287.0 bits (733), Expect = 1.4e-73
Identity = 149/209 (71.29%), Postives = 159/209 (76.08%), Query Frame = 0


Query: 1   MGRSPCCDKSIVKKGPWSPEEDAKLKDYIDKNGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGRSPCCDK+IVKKGPWSPEEDAKLK YI  +GT GNWISLPQKAGL RCGKSCRLRWLN
Sbjct: 1   MGRSPCCDKAIVKKGPWSPEEDAKLKAYIINHGTAGNWISLPQKAGLNRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKRKLIGM 120
           YLRPNIKHGGFT+EEDRIICTLFSTIGSRWSIIA+QLPGRTDNDIKNHWNSKLKRKLI M
Sbjct: 61  YLRPNIKHGGFTDEEDRIICTLFSTIGSRWSIIASQLPGRTDNDIKNHWNSKLKRKLIAM 120

Query: 121 EKKGQMTTNTTTMTIPSSHNHHQQVFSSFSSQPLSSLIYKDEFNDINYYNNSFSPPSTTA 180
           EKK QM       T+PS HNHHQ   SSF SQ L             Y +++FS      
Sbjct: 121 EKKAQMG------TMPSFHNHHQ--ISSFPSQQL-------------YQDSNFS------ 180

Query: 181 IRNFETLISSIPSNWSNFQITNNISPCLV 210
             +FETLISSIPSNWSN Q     S  L+
Sbjct: 181 --SFETLISSIPSNWSNIQTKETNSNSLM 180

[Close]

BLAST of Clc03G03050 vs. NCBI nr
Match: KAG6583564.1 (Transcription factor RAX3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 287.0 bits (733), Expect = 1.4e-73
Identity = 149/209 (71.29%), Postives = 159/209 (76.08%), Query Frame = 0


Query: 1   MGRSPCCDKSIVKKGPWSPEEDAKLKDYIDKNGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGRSPCCDK+IVKKGPWSPEEDAKLK YI  +GT GNWISLPQKAGL RCGKSCRLRWLN
Sbjct: 1   MGRSPCCDKAIVKKGPWSPEEDAKLKAYIINHGTAGNWISLPQKAGLNRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKRKLIGM 120
           YLRPNIKHGGFT+EEDRIICTLFSTIGSRWSIIA+QLPGRTDNDIKNHWNSKLKRKLI M
Sbjct: 61  YLRPNIKHGGFTDEEDRIICTLFSTIGSRWSIIASQLPGRTDNDIKNHWNSKLKRKLIAM 120

Query: 121 EKKGQMTTNTTTMTIPSSHNHHQQVFSSFSSQPLSSLIYKDEFNDINYYNNSFSPPSTTA 180
           EKK QM       T+PS HNHHQ   SSF SQ L             Y +++FS      
Sbjct: 121 EKKAQMG------TMPSFHNHHQ--ISSFPSQQL-------------YQDSNFS------ 180

Query: 181 IRNFETLISSIPSNWSNFQITNNISPCLV 210
             +FETLISSIPSNWSN Q     S  L+
Sbjct: 181 --SFETLISSIPSNWSNIQTKETNSNSLM 180

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BLAST of Clc03G03050 vs. ExPASy Swiss-Prot
Match: Q9FKL2 (Transcription factor MYB36 OS=Arabidopsis thaliana OX=3702 GN=MYB36 PE=1 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 3.2e-60
Identity = 112/177 (63.28%), Postives = 138/177 (77.97%), Query Frame = 0


Query: 1   MGRSPCCDKSIVKKGPWSPEEDAKLKDYIDKNGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGR+PCCDK+ VKKGPWSPEED KLKDYIDK GTGGNWI+LPQK GLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDVKLKDYIDKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKRKLIGM 120
           YLRPNIKHGGF+EEEDRII +L+ +IGSRWSIIA QLPGRTDNDIKN+WN+KLK+KL+G 
Sbjct: 61  YLRPNIKHGGFSEEEDRIILSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLGR 120

Query: 121 EKKGQMTTNTTTMTIPS-SHNHHQQVFSSFSSQPLSSLIYKDEFNDI-----NYYNN 172
           +K+     + T  T  + S+N++ +   + S+  L  L    +  ++     ++YNN
Sbjct: 121 QKQMNRQDSITDSTENNLSNNNNNKSPQNLSNSALERLQLHMQLQNLQSPFSSFYNN 177

[Close]

BLAST of Clc03G03050 vs. ExPASy Swiss-Prot
Match: Q9M2Y9 (Transcription factor RAX3 OS=Arabidopsis thaliana OX=3702 GN=RAX3 PE=2 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 7.8e-59
Identity = 103/146 (70.55%), Postives = 120/146 (82.19%), Query Frame = 0


Query: 1   MGRSPCCDKSIVKKGPWSPEEDAKLKDYIDKNGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGR+PCCDK+ VKKGPWSPEEDAKLK YI+ +GTGGNWI+LPQK GLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKRKLIGM 120
           YLRPNIKHGGF+EEE+ IIC+L+ TIGSRWSIIA QLPGRTDNDIKN+WN++LK+KLI  
Sbjct: 61  YLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLINK 120

Query: 121 EKK--GQMTTNTTTMTIPSSHNHHQQ 145
           ++K   +       M +     H QQ
Sbjct: 121 QRKELQEACMEQQEMMVMMKRQHQQQ 146

[Close]

BLAST of Clc03G03050 vs. ExPASy Swiss-Prot
Match: Q9SJL7 (Transcription factor RAX2 OS=Arabidopsis thaliana OX=3702 GN=RAX2 PE=1 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.5e-57
Identity = 109/172 (63.37%), Postives = 129/172 (75.00%), Query Frame = 0


Query: 1   MGRSPCCDKSIVKKGPWSPEEDAKLKDYIDKNGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGR+PCCDK+ VK+GPWSPEEDAKLKDYI+K GTGGNWI+LP KAGL+RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKRKLIGM 120
           YLRPNI+HG FTEEED II +LF++IGSRWS+IA  L GRTDNDIKN+WN+KLK+KLI  
Sbjct: 61  YLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNTKLKKKLI-- 120

Query: 121 EKKGQMTTNTTTMTIPSSHNHHQQVFSSFSSQPLSSLIYKDEFNDINYYNNS 173
                      TM  P   +HH  + +S SS   SS  + +  N +  YN S
Sbjct: 121 ----------ATMAPPP--HHHLAIATSSSSASPSSSSHYNMINSLLPYNPS 158

[Close]

BLAST of Clc03G03050 vs. ExPASy Swiss-Prot
Match: F4JSU0 (Transcription factor MYB87 OS=Arabidopsis thaliana OX=3702 GN=MYB87 PE=2 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.6e-56
Identity = 102/150 (68.00%), Postives = 122/150 (81.33%), Query Frame = 0


Query: 1   MGRSPCCDKSIVKKGPWSPEEDAKLKDYIDKNGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGR+PCCDK  VKKGPWS EEDA LK YI+K+GTG NWISLPQ+ G+KRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKMAVKKGPWSTEEDAVLKSYIEKHGTGNNWISLPQRIGIKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKRKLIGM 120
           YLRPN+KHGGFT+EED IIC+L+ TIGSRWSIIA+QLPGRTDNDIKN+WN++LK+KL+  
Sbjct: 61  YLRPNLKHGGFTDEEDYIICSLYITIGSRWSIIASQLPGRTDNDIKNYWNTRLKKKLLSK 120

Query: 121 EKKG---QMTTNTTTMTIPSSHNHHQ-QVF 147
           + K    Q+       T  SS + +Q Q+F
Sbjct: 121 QGKAFHQQLNVKFERGTTSSSSSQNQIQIF 150

[Close]

BLAST of Clc03G03050 vs. ExPASy Swiss-Prot
Match: Q9FG68 (Transcription factor RAX1 OS=Arabidopsis thaliana OX=3702 GN=RAX1 PE=1 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.0e-54
Identity = 114/223 (51.12%), Postives = 146/223 (65.47%), Query Frame = 0


Query: 1   MGRSPCCDKSIVKKGPWSPEEDAKLKDYIDKNGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGR+PCCDK+ VK+GPWSPEED+KL+DYI+K G GGNWIS P KAGL+RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKRKLIGM 120
           YLRPNIKHG F+EEEDRII +LF+ IGSRWSIIA  LPGRTDNDIKN+WN+KL++KL+  
Sbjct: 61  YLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNTKLRKKLLSS 120

Query: 121 EKKGQMTT---------------NTTTMTIP-SSHNHHQQVFSSFSSQPLSSLIYKDEFN 180
                 +                 T+  TIP SS+N + +  + + ++ L S I   E  
Sbjct: 121 SSDSSSSAMASPYLNPISQDVKRPTSPTTIPSSSYNPYAENPNQYPTKSLISSINGFEAG 180

Query: 181 D---INYYNNSFSPPSTTAIRNFETLISSIPSNWSNFQITNNI 205
           D   I+Y N ++      +  N  T      SN + F + +N+
Sbjct: 181 DKQIISYINPNYPQDLYLSDSNNNT------SNANGFLLNHNM 217

[Close]

BLAST of Clc03G03050 vs. ExPASy TrEMBL
Match: A0A0A0LUZ6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G109320 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.4e-95
Identity = 182/221 (82.35%), Postives = 193/221 (87.33%), Query Frame = 0


Query: 1   MGRSPCCDKSIVKKGPWSPEEDAKLKDYIDKNGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGRSPCCDKS VKKGPWSPEEDAKLKD+IDKNGTGGNWISLPQKAGLKRCGKSCRLRWLN
Sbjct: 1   MGRSPCCDKSNVKKGPWSPEEDAKLKDFIDKNGTGGNWISLPQKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKRKLIGM 120
           YLRPNIKHGGFT+EEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKRKLI M
Sbjct: 61  YLRPNIKHGGFTDEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKRKLIEM 120

Query: 121 EKKGQMTTNTTTMTIPSSHN-HHQQVFSSFSSQPLSSLIYK--DEFNDINYYNNSFSPPS 180
           EKK Q+   TT+ TIPSSHN HH Q+FSSFSSQPLSSLI K  D FNDINY N + S P 
Sbjct: 121 EKKAQI---TTSRTIPSSHNHHHHQIFSSFSSQPLSSLINKHDDYFNDINYSNYNLSSPP 180

Query: 181 TTAIRNFETLISSIPSNWSNFQITNNISPCLVQTQENQQLI 219
           TT I++FE+LISSIPSNWSN     + SPCLVQTQE   L+
Sbjct: 181 TT-IKSFESLISSIPSNWSNNNNNISPSPCLVQTQETTNLL 217

[Close]

BLAST of Clc03G03050 vs. ExPASy TrEMBL
Match: A0A6J1HMF7 (transcription factor MYB87-like OS=Cucurbita moschata OX=3662 GN=LOC111464910 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 6.8e-74
Identity = 149/209 (71.29%), Postives = 159/209 (76.08%), Query Frame = 0


Query: 1   MGRSPCCDKSIVKKGPWSPEEDAKLKDYIDKNGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGRSPCCDK+IVKKGPWSPEEDAKLK YI  +GT GNWISLPQKAGL RCGKSCRLRWLN
Sbjct: 1   MGRSPCCDKAIVKKGPWSPEEDAKLKAYIINHGTAGNWISLPQKAGLNRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKRKLIGM 120
           YLRPNIKHGGFT+EEDRIICTLFSTIGSRWSIIA+QLPGRTDNDIKNHWNSKLKRKLI M
Sbjct: 61  YLRPNIKHGGFTDEEDRIICTLFSTIGSRWSIIASQLPGRTDNDIKNHWNSKLKRKLIAM 120

Query: 121 EKKGQMTTNTTTMTIPSSHNHHQQVFSSFSSQPLSSLIYKDEFNDINYYNNSFSPPSTTA 180
           EKK QM       T+PS HNHHQ   SSF SQ L             Y +++FS      
Sbjct: 121 EKKAQMG------TMPSFHNHHQ--ISSFPSQQL-------------YQDSNFS------ 180

Query: 181 IRNFETLISSIPSNWSNFQITNNISPCLV 210
             +FETLISSIPSNWSN Q     S  L+
Sbjct: 181 --SFETLISSIPSNWSNIQTKETNSNSLM 180

[Close]

BLAST of Clc03G03050 vs. ExPASy TrEMBL
Match: A0A6J1I053 (transcription factor MYB87-like OS=Cucurbita maxima OX=3661 GN=LOC111469280 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 3.4e-73
Identity = 150/222 (67.57%), Postives = 163/222 (73.42%), Query Frame = 0


Query: 1   MGRSPCCDKSIVKKGPWSPEEDAKLKDYIDKNGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGRSPCCDK+IVKKGPWSPEEDAKLK YI  +GT GNWISLPQKAGL RCGKSCRLRWLN
Sbjct: 1   MGRSPCCDKAIVKKGPWSPEEDAKLKAYIMNHGTAGNWISLPQKAGLNRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKRKLIGM 120
           YLRPNIKHGGFT+EEDRIICTLF TIGSRWSIIA+QLPGRTDNDIKNHWNSKLKRKLI M
Sbjct: 61  YLRPNIKHGGFTDEEDRIICTLFCTIGSRWSIIASQLPGRTDNDIKNHWNSKLKRKLIAM 120

Query: 121 EKKGQMTTNTTTMTIPSSHNHHQQVFSSFSSQPLSSLIYKDEFNDINYYNNSFSPPSTTA 180
           EKK QM       T+PS HNHHQ   SSF SQ L             Y +++FS      
Sbjct: 121 EKKAQMG------TMPSFHNHHQ--ISSFPSQQL-------------YQDSNFS------ 180

Query: 181 IRNFETLISSIPSNWSNFQITNNISPCLVQ---TQENQQLIE 220
             +FETLISSIPSNWSN Q     S  L+    T  N  +++
Sbjct: 181 --SFETLISSIPSNWSNIQTKETSSNSLMNNSLTYNNNPMVK 193

[Close]

BLAST of Clc03G03050 vs. ExPASy TrEMBL
Match: A0A6J1K990 (transcription factor MYB36-like OS=Cucurbita maxima OX=3661 GN=LOC111493416 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 9.8e-73
Identity = 149/214 (69.63%), Postives = 156/214 (72.90%), Query Frame = 0


Query: 1   MGRSPCCDKSIVKKGPWSPEEDAKLKDYIDKNGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGRSPCCDK+ VKKGPWSPEEDAKLK YI  +GTGGNWISLPQKAGLKRCGKSCRLRWLN
Sbjct: 1   MGRSPCCDKANVKKGPWSPEEDAKLKAYIHNHGTGGNWISLPQKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKRKLIGM 120
           YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLK+KLIGM
Sbjct: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKKKLIGM 120

Query: 121 EKKGQMTTNTTTMTIPSSHNHHQQVFSSFSSQPLSSLIYKDEFNDINYYNNSFSPPSTTA 180
           EK  Q+    TTM   S HN HQ   SSF +QPL                          
Sbjct: 121 EKHPQII--PTTMPYSSHHNDHQ--VSSFPAQPL-------------------------- 174

Query: 181 IRNFETLISSIPSNWSNFQITNNISPCLVQTQEN 215
                   SSIPSNWSN    +NISPCLV TQE+
Sbjct: 181 --------SSIPSNWSN--DNDNISPCLVPTQES 174

[Close]

BLAST of Clc03G03050 vs. ExPASy TrEMBL
Match: A0A6J1GAF5 (transcription factor MYB36-like OS=Cucurbita moschata OX=3662 GN=LOC111452384 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 6.4e-72
Identity = 149/219 (68.04%), Postives = 156/219 (71.23%), Query Frame = 0


Query: 1   MGRSPCCDKSIVKKGPWSPEEDAKLKDYIDKNGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGRSPCCDK+ VKKGPWSPEEDAKLK YI  +GTGGNWISLPQKAGLKRCGKSCRLRWLN
Sbjct: 1   MGRSPCCDKANVKKGPWSPEEDAKLKAYIHNHGTGGNWISLPQKAGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKRKLIGM 120
           YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLK+KLIGM
Sbjct: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKKKLIGM 120

Query: 121 EKKGQMTTNTTTMTIPSSHNHHQQVFSSFSSQPLSSLIYKDEFNDINYYNNSFSPPSTTA 180
           EK  Q+    TTM   S HN HQ   SSF +QPL                          
Sbjct: 121 EKHPQIIP-PTTMPYSSHHNDHQ--VSSFPAQPL-------------------------- 180

Query: 181 IRNFETLISSIPSNWSNFQIT-----NNISPCLVQTQEN 215
                   SSIPSNWSN         +NISPCLV TQE+
Sbjct: 181 --------SSIPSNWSNNNDNDNDNIDNISPCLVPTQES 182

[Close]

BLAST of Clc03G03050 vs. TAIR 10
Match: AT5G57620.1 (myb domain protein 36 )

HSP 1 Score: 233.0 bits (593), Expect = 2.2e-61
Identity = 112/177 (63.28%), Postives = 138/177 (77.97%), Query Frame = 0


Query: 1   MGRSPCCDKSIVKKGPWSPEEDAKLKDYIDKNGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGR+PCCDK+ VKKGPWSPEED KLKDYIDK GTGGNWI+LPQK GLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDVKLKDYIDKYGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKRKLIGM 120
           YLRPNIKHGGF+EEEDRII +L+ +IGSRWSIIA QLPGRTDNDIKN+WN+KLK+KL+G 
Sbjct: 61  YLRPNIKHGGFSEEEDRIILSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLGR 120

Query: 121 EKKGQMTTNTTTMTIPS-SHNHHQQVFSSFSSQPLSSLIYKDEFNDI-----NYYNN 172
           +K+     + T  T  + S+N++ +   + S+  L  L    +  ++     ++YNN
Sbjct: 121 QKQMNRQDSITDSTENNLSNNNNNKSPQNLSNSALERLQLHMQLQNLQSPFSSFYNN 177

[Close]

BLAST of Clc03G03050 vs. TAIR 10
Match: AT5G65790.1 (myb domain protein 68 )

HSP 1 Score: 231.1 bits (588), Expect = 8.5e-61
Identity = 99/123 (80.49%), Postives = 114/123 (92.68%), Query Frame = 0


Query: 1   MGRSPCCDKSIVKKGPWSPEEDAKLKDYIDKNGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGR+PCCDK+ VKKGPWSPEEDAKLKDYI+ +GTGGNWI+LPQK GL+RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKDYIENSGTGGNWIALPQKIGLRRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKRKLIGM 120
           YLRPNIKHGGF+EEED IIC L+ TIGSRWSIIA QLPGRTDNDIKN+WN++LK+KL+  
Sbjct: 61  YLRPNIKHGGFSEEEDNIICNLYVTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLNK 120

Query: 121 EKK 124
           ++K
Sbjct: 121 QRK 123

[Close]

BLAST of Clc03G03050 vs. TAIR 10
Match: AT3G49690.1 (myb domain protein 84 )

HSP 1 Score: 228.4 bits (581), Expect = 5.5e-60
Identity = 103/146 (70.55%), Postives = 120/146 (82.19%), Query Frame = 0


Query: 1   MGRSPCCDKSIVKKGPWSPEEDAKLKDYIDKNGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGR+PCCDK+ VKKGPWSPEEDAKLK YI+ +GTGGNWI+LPQK GLKRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKRKLIGM 120
           YLRPNIKHGGF+EEE+ IIC+L+ TIGSRWSIIA QLPGRTDNDIKN+WN++LK+KLI  
Sbjct: 61  YLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLINK 120

Query: 121 EKK--GQMTTNTTTMTIPSSHNHHQQ 145
           ++K   +       M +     H QQ
Sbjct: 121 QRKELQEACMEQQEMMVMMKRQHQQQ 146

[Close]

BLAST of Clc03G03050 vs. TAIR 10
Match: AT2G36890.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 223.4 bits (568), Expect = 1.8e-58
Identity = 109/172 (63.37%), Postives = 129/172 (75.00%), Query Frame = 0


Query: 1   MGRSPCCDKSIVKKGPWSPEEDAKLKDYIDKNGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGR+PCCDK+ VK+GPWSPEEDAKLKDYI+K GTGGNWI+LP KAGL+RCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKRKLIGM 120
           YLRPNI+HG FTEEED II +LF++IGSRWS+IA  L GRTDNDIKN+WN+KLK+KLI  
Sbjct: 61  YLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNTKLKKKLI-- 120

Query: 121 EKKGQMTTNTTTMTIPSSHNHHQQVFSSFSSQPLSSLIYKDEFNDINYYNNS 173
                      TM  P   +HH  + +S SS   SS  + +  N +  YN S
Sbjct: 121 ----------ATMAPPP--HHHLAIATSSSSASPSSSSHYNMINSLLPYNPS 158

[Close]

BLAST of Clc03G03050 vs. TAIR 10
Match: AT4G37780.1 (myb domain protein 87 )

HSP 1 Score: 220.7 bits (561), Expect = 1.2e-57
Identity = 102/150 (68.00%), Postives = 122/150 (81.33%), Query Frame = 0


Query: 1   MGRSPCCDKSIVKKGPWSPEEDAKLKDYIDKNGTGGNWISLPQKAGLKRCGKSCRLRWLN 60
           MGR+PCCDK  VKKGPWS EEDA LK YI+K+GTG NWISLPQ+ G+KRCGKSCRLRWLN
Sbjct: 1   MGRAPCCDKMAVKKGPWSTEEDAVLKSYIEKHGTGNNWISLPQRIGIKRCGKSCRLRWLN 60

Query: 61  YLRPNIKHGGFTEEEDRIICTLFSTIGSRWSIIATQLPGRTDNDIKNHWNSKLKRKLIGM 120
           YLRPN+KHGGFT+EED IIC+L+ TIGSRWSIIA+QLPGRTDNDIKN+WN++LK+KL+  
Sbjct: 61  YLRPNLKHGGFTDEEDYIICSLYITIGSRWSIIASQLPGRTDNDIKNYWNTRLKKKLLSK 120

Query: 121 EKKG---QMTTNTTTMTIPSSHNHHQ-QVF 147
           + K    Q+       T  SS + +Q Q+F
Sbjct: 121 QGKAFHQQLNVKFERGTTSSSSSQNQIQIF 150

The following BLAST results are available for this feature:

BLAST of Clc03G03050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895741.1	6.7e-100	84.47	transcription factor RAX2-like [Benincasa hispida]	[more]
XP_031736008.1	2.9e-95	82.35	transcription factor MYB36-like [Cucumis sativus]	[more]
KAE8652761.1	2.9e-95	82.35	hypothetical protein Csa_014020, partial [Cucumis sativus]	[more]
XP_023520293.1	1.4e-73	71.29	transcription factor MYB87-like [Cucurbita pepo subsp. pepo]	[more]
KAG6583564.1	1.4e-73	71.29	Transcription factor RAX3, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Clc03G03050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKL2	3.2e-60	63.28	Transcription factor MYB36 OS=Arabidopsis thaliana OX=3702 GN=MYB36 PE=1 SV=1	[more]
Q9M2Y9	7.8e-59	70.55	Transcription factor RAX3 OS=Arabidopsis thaliana OX=3702 GN=RAX3 PE=2 SV=1	[more]
Q9SJL7	2.5e-57	63.37	Transcription factor RAX2 OS=Arabidopsis thaliana OX=3702 GN=RAX2 PE=1 SV=1	[more]
F4JSU0	1.6e-56	68.00	Transcription factor MYB87 OS=Arabidopsis thaliana OX=3702 GN=MYB87 PE=2 SV=1	[more]
Q9FG68	2.0e-54	51.12	Transcription factor RAX1 OS=Arabidopsis thaliana OX=3702 GN=RAX1 PE=1 SV=1	[more]

BLAST of Clc03G03050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUZ6	1.4e-95	82.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G109320 PE=4 SV=1	[more]
A0A6J1HMF7	6.8e-74	71.29	transcription factor MYB87-like OS=Cucurbita moschata OX=3662 GN=LOC111464910 PE...	[more]
A0A6J1I053	3.4e-73	67.57	transcription factor MYB87-like OS=Cucurbita maxima OX=3661 GN=LOC111469280 PE=4...	[more]
A0A6J1K990	9.8e-73	69.63	transcription factor MYB36-like OS=Cucurbita maxima OX=3661 GN=LOC111493416 PE=4...	[more]
A0A6J1GAF5	6.4e-72	68.04	transcription factor MYB36-like OS=Cucurbita moschata OX=3662 GN=LOC111452384 PE...	[more]

BLAST of Clc03G03050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57620.1	2.2e-61	63.28	myb domain protein 36	[more]
AT5G65790.1	8.5e-61	80.49	myb domain protein 68	[more]
AT3G49690.1	5.5e-60	70.55	myb domain protein 84	[more]
AT2G36890.1	1.8e-58	63.37	Duplicated homeodomain-like superfamily protein	[more]
AT4G37780.1	1.2e-57	68.00	myb domain protein 87	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 208..219
None	No IPR available	GENE3D	1.10.10.60		coord: 7..68 e-value: 4.3E-18 score: 66.9
None	No IPR available	GENE3D	1.10.10.60		coord: 70..144 e-value: 1.5E-20 score: 75.0
None	No IPR available	PANTHER	PTHR48000:SF36	OS09G0431300 PROTEIN	coord: 1..180
None	No IPR available	PANTHER	PTHR48000	OS09G0431300 PROTEIN	coord: 1..180
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 13..64 e-value: 6.7E-11 score: 52.2 coord: 67..115 e-value: 6.0E-12 score: 55.7
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 9..62 score: 10.41773
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 63..113 score: 9.6397
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 71..113 e-value: 2.32627E-8 score: 46.7998
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 16..62 e-value: 1.22708E-7 score: 44.8738
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 14..62 e-value: 4.6E-13 score: 49.2 coord: 69..111 e-value: 7.0E-11 score: 42.2
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 63..117 score: 22.891535
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 9..62 score: 16.515566
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 13..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G03050.1	Clc03G03050.1	mRNA