Clc02G25200 (gene) Watermelon (cordophanus) v2

Overview
NameClc02G25200
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionMitochondrial distribution and morphology protein 34
LocationClcChr02: 36913124 .. 36915100 (-)
RNA-Seq ExpressionClc02G25200
SyntenyClc02G25200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCCGAGTAGTCCATACATGCAAAGAAAAAGGAATTAAAAATATTTTGAAGAGAATTAAAGGTGAAAATAAATTACGATGAAACAATTAAATGAGAGGAGATAATATTTTTCAGCCTAATTGGCTCCTTCCTTGTGTTGTAGTCTGGGAAGGGGAACAAAACTCCAAATTTGAGATCAAAGAAGCTTTCAAAACTTGAAGGAGTGAGAATGAAAGCTTCAGAGCTTTCAACTCCAACGAATGCCGTAGAATGCAAGGACAGGCCCCAAAAACCGCCGTTCAGGCCTGCTAAAGACGACACCAAGCTCCTTCTTCAAGATCCGGTTCTCTCTCTCCCAAATTAACTCTTACCACTAATTCCTTCCTTCTACTTTCATTCTACTTTCATTCTTGAATTTTGTTGTACCAATGTGCACCTACTGAAGATTGTTCCCATTTCTTTCTTTTGCTATAGATACGGAGGTCAGATCCAATTGACACAGAGGAAGCCGTGCTCCGACCACCTCCCTTCCATTTCTCTGTTCCGAAATCAAAGAACCCTTCTCAAATGGGGTGAAAGAAAAAAATTAGATTTTTTATTTTCATGTTATGTCTGTTCTTGTTGTTCCATTCCATGAATGATCACGTTTTGTGATATCGAACATTTAATGAAAATAGAAGTCCATTTGTTTCTACGCATTATGCCTTTGTGCTCTAGTCGAGACTGAATAGAATTCCCACTATCCTCTTCAACCAAATTTATCTTCCAAGTTATATAACTTCTTTACTTTGATGGTACAAAAGAATATTGATCCTCATTAGTCATCAATGACACGATCGTGCGTCCCAACTGTTCGACGAAATGCTTAAGTGGGAGGTAAGCTTTGAGACGGCCGCTTTTTTTTTTCTCCAACAGACGCCTACAAGTGTGTGATTTGCCTCTGTCTGTTCGGGCTGATGAAAGACAACCGTGAGAGGCTTTTGGATCATTCAGTGCTGATTCTAATCTCCATAGCCAAATGAGAGAAGATACAGGTACGCCCACGCCATCAGAATTGTTGAACTGTCTCATTAGTTCGACATTTCCTTTTCTGTTTCAGGCACCGTCTCATTAGTCATCAATTCCATTTCATTTACTTTGAAATGGAATTACAGTTTGGCTCAAGCCAACTATCCAAACTGGCCACTAGTTTTTGAATTCAAGGACACAGTTGTGCAACCTATAGAACAACCTATTCAAGTAAGGCCATTTGTTACAAGCTGATCTGAGTTGTTTTGATACAAGTTGAGTTCAATGGCAGACTTCAGCGAAATCTAGTTGATCTAAGTCAAAGGCAAACCAAATCCCGAACTCTTTATATCACTGTTAAGAATCTTACAACGGAAAAATCAAAGAACCTTACACTCTTAATAAGAAAGATGGATTACTCCGTTCATAGTCAATTGGTCTTGAGGTGAAACCCCATGTTATCTAATAATCACCACCCAAGCTAGGCTAGTTCACGAGCTAATGAGCTCAACTAAGCAACTCTTAAGCTATGCTTAGGAGACCTGCTAGAAGAGTGAGTTCAATCACATGAGGAACTTCGAGCTTGGCACCTGAATAGGAGAAATTAGTTCAAAAGGGTTCGGGAAGCACAAGCTCCTTTGGTGTGGGGGTTCATGTAAGCTTACTCTCTCTTATCATTTATCAACAATCAATCCATTAGCAATGACTGTCCATAAACTATCACCCATTAAGTTTACCTATTAAACAAACCCTAAAGAAAGATTTTAATTAGAAAGACGCACAACATCGCGTTTAATTTCGTTCTAGCTACTGCAACCTATGACTAAATTGTGATCATCGTACTTCTCTAATCAACTAGTTAGGTAGAATATTCTTATTATTACATTCAAGAACCTTGTCTTGCACAATTCAACTTTGATTTGACTGAAATAGCAGAAAACATTGGTGTCTTGTCTAATACCTTTCCTGTTGTAAATGCTGTTTAA

mRNA sequence

ATGGAATTAAAGTCTGGGAAGGGGAACAAAACTCCAAATTTGAGATCAAAGAAGCTTTCAAAACTTGAAGGAGTGAGAATGAAAGCTTCAGAGCTTTCAACTCCAACGAATGCCGTAGAATGCAAGGACAGGCCCCAAAAACCGCCGTTCAGGCCTGCTAAAGACGACACCAAGCTCCTTCTTCAAGATCCGATACGGAGGTCAGATCCAATTGACACAGAGGAAGCCGTGCTCCGACCACCTCCCTTCCATTTCTCTGTTCCGAAATCAAAGAACCCTTCTCAAATGGGACGCCTACAAGTGTGTGATTTGCCTCTGTCTGTTCGGGCTGATGAAAGACAACCTGCTGATTCTAATCTCCATAGCCAAATGAGAGAAGATACAGGCACCGTCTCATTAGTCATCAATTCCATTTCATTTACTTTGAAATGGAATTACAGTTTGGCTCAAGCCAACTATCCAAACTGGCCACTAGTTTTTGAATTCAAGGACACAGTTGTGCAACCTATAGAACAACCTATTCAAGTAGAATATTCTTATTATTACATTCAAGAACCTTGTCTTGCACAATTCAACTTTGATTTGACTGAAATAGCAGAAAACATTGGTGTCTTGTCTAATACCTTTCCTGTTGTAAATGCTGTTTAA

Coding sequence (CDS)

ATGGAATTAAAGTCTGGGAAGGGGAACAAAACTCCAAATTTGAGATCAAAGAAGCTTTCAAAACTTGAAGGAGTGAGAATGAAAGCTTCAGAGCTTTCAACTCCAACGAATGCCGTAGAATGCAAGGACAGGCCCCAAAAACCGCCGTTCAGGCCTGCTAAAGACGACACCAAGCTCCTTCTTCAAGATCCGATACGGAGGTCAGATCCAATTGACACAGAGGAAGCCGTGCTCCGACCACCTCCCTTCCATTTCTCTGTTCCGAAATCAAAGAACCCTTCTCAAATGGGACGCCTACAAGTGTGTGATTTGCCTCTGTCTGTTCGGGCTGATGAAAGACAACCTGCTGATTCTAATCTCCATAGCCAAATGAGAGAAGATACAGGCACCGTCTCATTAGTCATCAATTCCATTTCATTTACTTTGAAATGGAATTACAGTTTGGCTCAAGCCAACTATCCAAACTGGCCACTAGTTTTTGAATTCAAGGACACAGTTGTGCAACCTATAGAACAACCTATTCAAGTAGAATATTCTTATTATTACATTCAAGAACCTTGTCTTGCACAATTCAACTTTGATTTGACTGAAATAGCAGAAAACATTGGTGTCTTGTCTAATACCTTTCCTGTTGTAAATGCTGTTTAA

Protein sequence

MELKSGKGNKTPNLRSKKLSKLEGVRMKASELSTPTNAVECKDRPQKPPFRPAKDDTKLLLQDPIRRSDPIDTEEAVLRPPPFHFSVPKSKNPSQMGRLQVCDLPLSVRADERQPADSNLHSQMREDTGTVSLVINSISFTLKWNYSLAQANYPNWPLVFEFKDTVVQPIEQPIQVEYSYYYIQEPCLAQFNFDLTEIAENIGVLSNTFPVVNAV
Homology
BLAST of Clc02G25200 vs. NCBI nr
Match: KGN54090.1 (hypothetical protein Csa_017904 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 7.9e-29
Identity = 65/71 (91.55%), Postives = 70/71 (98.59%), Query Frame = 0

Query: 27 MKASELSTPTNAVECKDRPQKPPFRPAKDDTKLLLQDPIRRSDPIDTEEAVLRPPPFHFS 86
          MKASELS+P+N VECK+RPQKPPFRPAKDDTKLLLQDPIRRSDPI+TEEAVLRPPPFHFS
Sbjct: 1  MKASELSSPSNTVECKERPQKPPFRPAKDDTKLLLQDPIRRSDPIETEEAVLRPPPFHFS 60

Query: 87 VPKSKNPSQMG 98
          +PKSKNPSQMG
Sbjct: 61 LPKSKNPSQMG 71

BLAST of Clc02G25200 vs. NCBI nr
Match: XP_022995760.1 (uncharacterized protein LOC111491196 [Cucurbita maxima])

HSP 1 Score: 128.6 bits (322), Expect = 6.3e-26
Identity = 66/82 (80.49%), Postives = 71/82 (86.59%), Query Frame = 0

Query: 19 LSKLEGVRMKASELST---PTNAVECKDRPQKPPFRPAKDDTKLLLQDPIRRSDPIDTEE 78
          LSKL+ V M+ SELST   PTNA ECKDRP KPPFRPAKDDTKL+LQDPIRRSDPI+TEE
Sbjct: 3  LSKLQPVTMRTSELSTPTNPTNAAECKDRPLKPPFRPAKDDTKLVLQDPIRRSDPIETEE 62

Query: 79 AVLRPPPFHFSVPKSKNPSQMG 98
          AVLRPPPF FSV KSKN S+MG
Sbjct: 63 AVLRPPPFQFSVSKSKNSSKMG 84

BLAST of Clc02G25200 vs. NCBI nr
Match: KAG7035826.1 (hypothetical protein SDJN02_02625 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.5 bits (306), Expect = 4.5e-24
Identity = 61/74 (82.43%), Postives = 67/74 (90.54%), Query Frame = 0

Query: 27 MKASELSTPTN---AVECKDRPQKPPFRPAKDDTKLLLQDPIRRSDPIDTEEAVLRPPPF 86
          M+ASELSTPTN    VECKDRP+KPPFRPAKDDTKL+LQDPIRRSDPI+TEEAVLRPPPF
Sbjct: 1  MRASELSTPTNPTTTVECKDRPRKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPF 60

Query: 87 HFSVPKSKNPSQMG 98
           FSV +SKN S+MG
Sbjct: 61 QFSVSESKNSSKMG 74

BLAST of Clc02G25200 vs. NCBI nr
Match: KAG6605875.1 (hypothetical protein SDJN03_03192, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.1 bits (305), Expect = 5.9e-24
Identity = 61/74 (82.43%), Postives = 66/74 (89.19%), Query Frame = 0

Query: 27 MKASELSTPTN---AVECKDRPQKPPFRPAKDDTKLLLQDPIRRSDPIDTEEAVLRPPPF 86
          M+ASELSTPTN    VECKDRP KPPFRPAKDDTKL+LQDPIRRSDPI+TEEAVLRPPPF
Sbjct: 1  MRASELSTPTNPTTTVECKDRPHKPPFRPAKDDTKLVLQDPIRRSDPIETEEAVLRPPPF 60

Query: 87 HFSVPKSKNPSQMG 98
           FSV +SKN S+MG
Sbjct: 61 QFSVSESKNSSKMG 74

BLAST of Clc02G25200 vs. NCBI nr
Match: XP_010257524.1 (PREDICTED: uncharacterized protein LOC104597593 [Nelumbo nucifera] >DAD42157.1 TPA_asm: hypothetical protein HUJ06_000387 [Nelumbo nucifera])

HSP 1 Score: 76.3 bits (186), Expect = 3.7e-10
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 0

Query: 27 MKASELSTPTNAVE-----CKDRPQKPPFRPAKDDTKLLLQDPIRRSDPIDTEEAVLRPP 84
          MK SE+   T+  E       D+PQKPPFRPAKDDTK +LQDPI RSDPI+TEEAVLR P
Sbjct: 1  MKGSEILIKTSESEGETKSFSDKPQKPPFRPAKDDTKPILQDPILRSDPIETEEAVLRLP 60

BLAST of Clc02G25200 vs. ExPASy TrEMBL
Match: A0A0A0KWV8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G280670 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 3.8e-29
Identity = 65/71 (91.55%), Postives = 70/71 (98.59%), Query Frame = 0

Query: 27 MKASELSTPTNAVECKDRPQKPPFRPAKDDTKLLLQDPIRRSDPIDTEEAVLRPPPFHFS 86
          MKASELS+P+N VECK+RPQKPPFRPAKDDTKLLLQDPIRRSDPI+TEEAVLRPPPFHFS
Sbjct: 1  MKASELSSPSNTVECKERPQKPPFRPAKDDTKLLLQDPIRRSDPIETEEAVLRPPPFHFS 60

Query: 87 VPKSKNPSQMG 98
          +PKSKNPSQMG
Sbjct: 61 LPKSKNPSQMG 71

BLAST of Clc02G25200 vs. ExPASy TrEMBL
Match: A0A6J1K4U9 (uncharacterized protein LOC111491196 OS=Cucurbita maxima OX=3661 GN=LOC111491196 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.0e-26
Identity = 66/82 (80.49%), Postives = 71/82 (86.59%), Query Frame = 0

Query: 19 LSKLEGVRMKASELST---PTNAVECKDRPQKPPFRPAKDDTKLLLQDPIRRSDPIDTEE 78
          LSKL+ V M+ SELST   PTNA ECKDRP KPPFRPAKDDTKL+LQDPIRRSDPI+TEE
Sbjct: 3  LSKLQPVTMRTSELSTPTNPTNAAECKDRPLKPPFRPAKDDTKLVLQDPIRRSDPIETEE 62

Query: 79 AVLRPPPFHFSVPKSKNPSQMG 98
          AVLRPPPF FSV KSKN S+MG
Sbjct: 63 AVLRPPPFQFSVSKSKNSSKMG 84

BLAST of Clc02G25200 vs. ExPASy TrEMBL
Match: A0A1U7ZV42 (uncharacterized protein LOC104597593 OS=Nelumbo nucifera OX=4432 GN=LOC104597593 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.8e-10
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 0

Query: 27 MKASELSTPTNAVE-----CKDRPQKPPFRPAKDDTKLLLQDPIRRSDPIDTEEAVLRPP 84
          MK SE+   T+  E       D+PQKPPFRPAKDDTK +LQDPI RSDPI+TEEAVLR P
Sbjct: 1  MKGSEILIKTSESEGETKSFSDKPQKPPFRPAKDDTKPILQDPILRSDPIETEEAVLRLP 60

BLAST of Clc02G25200 vs. ExPASy TrEMBL
Match: A0A1D1XLA5 (Mitochondrial distribution and morphology protein 34 (Fragment) OS=Anthurium amnicola OX=1678845 GN=mdm34_2 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.8e-10
Identity = 42/68 (61.76%), Postives = 50/68 (73.53%), Query Frame = 0

Query: 44  RPQKPPFRPAKDDTKLLLQDPIRRSDPIDTEEAVLRPPPFHFSVPKSKNPSQMGRL---- 103
           + QKPPFRPAKDDTK LL+DPI RSDPI+TE+AVLR PPF+ S P S   SQ+  L    
Sbjct: 51  KQQKPPFRPAKDDTKPLLRDPILRSDPIETEQAVLRLPPFYPSPPNSDEMSQLMGLVEVH 110

Query: 104 QVCDLPLS 108
           ++ DL LS
Sbjct: 111 KILDLGLS 118

BLAST of Clc02G25200 vs. ExPASy TrEMBL
Match: W9QLE6 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_013727 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.0e-10
Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = 0

Query: 27 MKASELST--PTNAVECKDRPQKPPFRPAKDDTKLLLQDPIRRSDPIDTEEAVLRPPPFH 86
          MKASE S     N  + +++P KP FRPAKDDTK +LQDPI RSDPI+TEEAVLR PPF 
Sbjct: 1  MKASESSVKPSNNYPQNREKPTKPSFRPAKDDTKPILQDPILRSDPIETEEAVLRLPPFP 60

Query: 87 FSVPKSKNP 94
          F+  ++ NP
Sbjct: 61 FA--RTTNP 67

BLAST of Clc02G25200 vs. TAIR 10
Match: AT2G20480.1 (unknown protein; Has 19 Blast hits to 19 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-09
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 0

Query: 28 KASELSTPTNAVECKDRPQKPPFRPAKDDTKLLLQDPIRRSDPIDTEEAVLRPPPF 84
          K++E     NA     + QKPPFRPA DDTK +LQDPI RSDP++TEEAVLR P F
Sbjct: 3  KSTETPARPNATV---KTQKPPFRPAVDDTKPVLQDPILRSDPMETEEAVLRLPSF 55

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN54090.17.9e-2991.55hypothetical protein Csa_017904 [Cucumis sativus][more]
XP_022995760.16.3e-2680.49uncharacterized protein LOC111491196 [Cucurbita maxima][more]
KAG7035826.14.5e-2482.43hypothetical protein SDJN02_02625 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6605875.15.9e-2482.43hypothetical protein SDJN03_03192, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_010257524.13.7e-1066.13PREDICTED: uncharacterized protein LOC104597593 [Nelumbo nucifera] >DAD42157.1 T... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KWV83.8e-2991.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G280670 PE=4 SV=1[more]
A0A6J1K4U93.0e-2680.49uncharacterized protein LOC111491196 OS=Cucurbita maxima OX=3661 GN=LOC111491196... [more]
A0A1U7ZV421.8e-1066.13uncharacterized protein LOC104597593 OS=Nelumbo nucifera OX=4432 GN=LOC104597593... [more]
A0A1D1XLA51.8e-1061.76Mitochondrial distribution and morphology protein 34 (Fragment) OS=Anthurium amn... [more]
W9QLE64.0e-1060.87Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_013727 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G20480.11.1e-0960.71unknown protein; Has 19 Blast hits to 19 proteins in 10 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..57
NoneNo IPR availablePANTHERPTHR37207OS09G0446000 PROTEINcoord: 37..93
NoneNo IPR availablePANTHERPTHR37207:SF1OS09G0446000 PROTEINcoord: 37..93

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc02G25200.2Clc02G25200.2mRNA