Clc02G24200 (gene) Watermelon (cordophanus) v2

Overview
NameClc02G24200
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionAnkyrin repeat family protein
LocationClcChr02: 36057978 .. 36060644 (+)
RNA-Seq ExpressionClc02G24200
SyntenyClc02G24200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGTTGCAAGGCGGCATTTGGGCGGAGTTGCGCCCAAAGCTTCAGCTTCGCTTTTACGCTGTAACAGCTTAAGAGACTTCGTTCTTCACTCTCTTCTCATAGAACCGCCGATTTAGGGTTTATACAGTCCAGAATTTGAAGGATTCTTCCCGTTGGAGACTCCGGCAGGCTTCACAATGGTGGCGGAAGAGAATCGATCAGAAGAGCAGAACACCGTGGAAACGACGCTGAATGACATCGAGGCTCTCGTTGATGTACAATCTTGAATCTCTTGCTTTATTGAATCCTCTAGTTCTGGTTTGTTCACTTTTCCTTCCATTGCAGAACATCTCCTTATCTTCTTATCGATCTTTCATAAAGTTTTCGATGGTTCGTTTAAAAGAATTCGCGTTGAAGTCGCTTAGTAATTGTACTCGGACAATTCTCGAGATACGCATGAGTGAAATGATTCATATGTTGTCTTTTTCAGAATTTACACAATGTCTGCGGTTCAGTGAAACTTTTGGTTTGAATTATAAGGAGCAAATTTTTAGACAATAAACACTAACTTGCCGAGTTAACTGTCTTGGTAAAAGCATTCATTCTCCAATTTTGACCATGGAAATGTATGGATAACTATAACTCTGAAACGAAACTGTGGAATAGCAAATTGTTCACCTATGAGGTGATTTTAAGTAATTAGTACATCCTACCTGAGAAACTGATCAAGATATTGGTGAGTTAAGAGTCCAGTTATGAAGGACTTAGTTTTTGTTATGTCATTTGACAGGCTGCTAGATACAATGATCTCGACGATGTAATAAGTCTTGCTTCTGCCGGTGTTTGTCTTGATTCTAAGGATTCCGAGGGCCGAACTGGTAACTTTCTTCCATATTTGGCAATAATTTTATTATTGTTATTGTTGTTATTGTTGTTGTTGTTGTTTACGTGCATCACAAATCACAATTGCTTGATAGGGGAATTTTATTATTGGATGAGTTAGTTTCCAACTCATGTTCTAGATTTACTAACATTTCAATGAAGCCTTCTGTTCCTGGTAAGATAACTTAATCACTCTGTTCGAATAACCATATTCACACCAGGTTTAGTAATTCGAAACTCAGTTAGTCGATATTTTCAAATTAGAACTTAATTGGTTTTGTTTTAGCATAAGGGCCTATTTGTAATGATTTTCAAAGTGGTTGAAGAGCTGTTTTTAAACATTTCGAGAATAAATCCAAATGGGCTCTAAGAATATTTTGCTAATTTAAAATTCTAGACCACTTGATGATGTAGTTTTATTGAGAATGCAATCAAGTTAAGCTCTGTTATTGTAATCTCTGTTATTCGATTGTAGCTCTACACATGGCTGCTGCCAATGGACATCTTTCGATAATAGAGTTTCTCATAAATAAAGGAGTGGTAAGATATCTACTTCTTGTAATTTACCTGCTGCTTGGGTTATGTATTTCTCCACTGACTAACAATTGAAAGTGGGATTAGTCTTTCTCGAGAAACAGCTTCTTGCATCTGTTTTTCATGCATCTGTGTGTCATTCTTGTCGTCAATCTGCTTGAAGTTGAACTATAAAGTGAATAAATTTGGACTGCTACAATTCCTTTTCTGATTGAATTGAACTAATTAAGTCCTCCAATGACACTCCAGTCCTGTTATATATTGTGCCTGTTGTAGTTTCGTTATATATTTGGATACAATACTTTCTGTCTGTTCACTTGAATGTTTATCCCACTTGCCTTGCTCATCACTTTCCAATTTATTTTAAGCTTCTGTTTGATGGAAGGCTAATTGGAATTTTTCATTTTAAAACCTTGGATTAGAGTCAGCAGATTTTGCCCATACGATCCTTACCCTCCCATTATATTTTTAACCTTTTTGAGTGTGAGCAGGATGTGAATGCTTTGAATGCAGAGAAGAATACACCACTGCATTGGGCATGTCTGAATGGCCATATTGAGGTAACGCTCTAATAATTTTAAGGTTAAGTTATAGGCTTAATAGGTCTCCGATTTTTAAACTATGTCTAATAGGTTTCTTTAAATAATTCTTCAATTTTTAATTGATCCTTTACTCATTCTCTTTAGGTGGTGAAGAAGTTGATCTTGGCAGGAGCTAATTTGAGCGTATTGAACAGGTACGTGATGTTGTTTTATAATTAATTGTGAGATTTAATTCAGACATTATAACAAGGATCTTTAAAATGTTGTTTATGTGTATAGCCATGAGAGAACTCCCATGGATGAAGCTCTGACTCGTGGGAAAATGGACGTCATCGACGCAATCAACACGGCGGTGGCGCAGGTCGAGCTCACTGGAATCAGTGTTTCAACTGTGGAAACAACATAGTTGAGGGAAATCAAAGTTTTGATCTATTGGCTTTAATATGTAGGAAAATTTATCAGTCTTATGAAAATTGCTGGAAAAAAAAAAGTTTAATTTGTTTTGGACCCTACAAATATATTTTTCGTTACCTTTTAAGTTGAATTTGTTTTATTAGTTAAGCATCTATTTATATGCCACCGGTAGGTTCTTAGTTTGGGCTTTTATCTTTTAAACGATTTTATATGTATATTTTAGCTTTGACCTTTCTATGTTAATGACAACTTAACCTCTAAACTTAGTTTGAAGTAATAAGTTAAAAATTCAGTGGTACGACCTACACATTA

mRNA sequence

ATGCAAGTTGCAAGGCGGCATTTGGGCGGAGTTGCGCCCAAAGCTTCAGCTTCGCTTTTACGCTGCTTCACAATGGTGGCGGAAGAGAATCGATCAGAAGAGCAGAACACCGTGGAAACGACGCTGAATGACATCGAGGCTCTCGTTGATGCTGCTAGATACAATGATCTCGACGATGTAATAAGTCTTGCTTCTGCCGGTGTTTGTCTTGATTCTAAGGATTCCGAGGGCCGAACTGCTCTACACATGGCTGCTGCCAATGGACATCTTTCGATAATAGAGTTTCTCATAAATAAAGGAGTGGATGTGAATGCTTTGAATGCAGAGAAGAATACACCACTGCATTGGGCATGTCTGAATGGCCATATTGAGGTGGTGAAGAAGTTGATCTTGGCAGGAGCTAATTTGAGCGTATTGAACAGCCATGAGAGAACTCCCATGGATGAAGCTCTGACTCGTGGGAAAATGGACGTCATCGACGCAATCAACACGGCGGTGGCGCAGGTCGAGCTCACTGGAATCAGTGTTTCAACTGTGGAAACAACATAGTTGAGGGAAATCAAAGTTTTGATCTATTGGCTTTAATATGTAGGAAAATTTATCAGTCTTATGAAAATTGCTGGAAAAAAAAAAGTTTAATTTGTTTTGGACCCTACAAATATATTTTTCGTTACCTTTTAAGTTGAATTTGTTTTATTAGTTAAGCATCTATTTATATGCCACCGGTAGGTTCTTAGTTTGGGCTTTTATCTTTTAAACGATTTTATATGTATATTTTAGCTTTGACCTTTCTATGTTAATGACAACTTAACCTCTAAACTTAGTTTGAAGTAATAAGTTAAAAATTCAGTGGTACGACCTACACATTA

Coding sequence (CDS)

ATGCAAGTTGCAAGGCGGCATTTGGGCGGAGTTGCGCCCAAAGCTTCAGCTTCGCTTTTACGCTGCTTCACAATGGTGGCGGAAGAGAATCGATCAGAAGAGCAGAACACCGTGGAAACGACGCTGAATGACATCGAGGCTCTCGTTGATGCTGCTAGATACAATGATCTCGACGATGTAATAAGTCTTGCTTCTGCCGGTGTTTGTCTTGATTCTAAGGATTCCGAGGGCCGAACTGCTCTACACATGGCTGCTGCCAATGGACATCTTTCGATAATAGAGTTTCTCATAAATAAAGGAGTGGATGTGAATGCTTTGAATGCAGAGAAGAATACACCACTGCATTGGGCATGTCTGAATGGCCATATTGAGGTGGTGAAGAAGTTGATCTTGGCAGGAGCTAATTTGAGCGTATTGAACAGCCATGAGAGAACTCCCATGGATGAAGCTCTGACTCGTGGGAAAATGGACGTCATCGACGCAATCAACACGGCGGTGGCGCAGGTCGAGCTCACTGGAATCAGTGTTTCAACTGTGGAAACAACATAG

Protein sequence

MQVARRHLGGVAPKASASLLRCFTMVAEENRSEEQNTVETTLNDIEALVDAARYNDLDDVISLASAGVCLDSKDSEGRTALHMAAANGHLSIIEFLINKGVDVNALNAEKNTPLHWACLNGHIEVVKKLILAGANLSVLNSHERTPMDEALTRGKMDVIDAINTAVAQVELTGISVSTVETT
Homology
[Close]
BLAST of Clc02G24200 vs. NCBI nr
Match: XP_038900447.1 (ankyrin repeat-containing protein P16F5.05c isoform X1 [Benincasa hispida])

HSP 1 Score: 282.3 bits (721), Expect = 2.9e-72
Identity = 145/156 (92.95%), Postives = 151/156 (96.79%), Query Frame = 0 

Query: 25  MVAEENRSEEQNTVETTLNDIEALVDAARYNDLDDVISLASAGVCLDSKDSEGRTALHMA 84
           MV E NRSEEQ+TVETT+NDIE LVDAARYND DDVISLASAGVCLDSKDS GRTALHMA
Sbjct: 1   MVMEANRSEEQSTVETTMNDIEDLVDAARYNDFDDVISLASAGVCLDSKDSNGRTALHMA 60

Query: 85  AANGHLSIIEFLINKGVDVNALNAEKNTPLHWACLNGHIEVVKKLILAGANLSVLNSHER 144
           AANGHLSI+EFLI+KGVDVNALNAEKNTPLHWACLNGHIEVVK+LILAGANLS+LNSHER
Sbjct: 61  AANGHLSIVEFLISKGVDVNALNAEKNTPLHWACLNGHIEVVKRLILAGANLSLLNSHER 120

Query: 145 TPMDEALTRGKMDVIDAINTAVAQVELTGISVSTVE 181
           TPMDEALTRGKMDVIDAINTAVAQVELTGISVSTVE
Sbjct: 121 TPMDEALTRGKMDVIDAINTAVAQVELTGISVSTVE 156

[Close]
BLAST of Clc02G24200 vs. NCBI nr
Match: XP_022943787.1 (ankyrin repeat domain-containing protein 2A isoform X2 [Cucurbita moschata])

HSP 1 Score: 277.7 bits (709), Expect = 7.1e-71
Identity = 140/157 (89.17%), Postives = 155/157 (98.73%), Query Frame = 0 

Query: 25  MVAEENRSEEQNTVETTLNDIEALVDAARYNDLDDVISLASAGVCLDSKDSEGRTALHMA 84
           +V EENRSEEQ+TVETT+NDIEALV+AARYND+DDV+SLASAGV LDSKDSEGRTALHMA
Sbjct: 2   VVVEENRSEEQSTVETTMNDIEALVEAARYNDVDDVVSLASAGVHLDSKDSEGRTALHMA 61

Query: 85  AANGHLSIIEFLINKGVDVNALNAEKNTPLHWACLNGHIEVVKKLILAGANLSVLNSHER 144
           AANGHLSI+EFLI+KGVDVNALNAEKNTPLHWACLNGHIEVVKKLIL+GAN+S+LNSHE+
Sbjct: 62  AANGHLSIVEFLISKGVDVNALNAEKNTPLHWACLNGHIEVVKKLILSGANVSLLNSHEK 121

Query: 145 TPMDEALTRGKMDVIDAINTAVAQVELTGISVSTVET 182
           TPMDEALTRGKMDVIDAINTAVAQ+ELTGISVS++ET
Sbjct: 122 TPMDEALTRGKMDVIDAINTAVAQIELTGISVSSMET 158

[Close]
BLAST of Clc02G24200 vs. NCBI nr
Match: XP_022987034.1 (ankyrin repeat domain-containing protein 2A isoform X2 [Cucurbita maxima])

HSP 1 Score: 276.6 bits (706), Expect = 1.6e-70
Identity = 139/157 (88.54%), Postives = 155/157 (98.73%), Query Frame = 0 

Query: 25  MVAEENRSEEQNTVETTLNDIEALVDAARYNDLDDVISLASAGVCLDSKDSEGRTALHMA 84
           +V EENRSEEQ+TVETT+NDIEALV+AARYND+DDV+SLASAGV LDSKDSEGRTALHMA
Sbjct: 2   VVVEENRSEEQSTVETTMNDIEALVEAARYNDIDDVVSLASAGVHLDSKDSEGRTALHMA 61

Query: 85  AANGHLSIIEFLINKGVDVNALNAEKNTPLHWACLNGHIEVVKKLILAGANLSVLNSHER 144
           AANGHLSI+EFLI+KGVDVNALNAEKNTPLHWACLNGHIEVV+KLIL+GAN+S+LNSHE+
Sbjct: 62  AANGHLSIVEFLISKGVDVNALNAEKNTPLHWACLNGHIEVVEKLILSGANVSLLNSHEK 121

Query: 145 TPMDEALTRGKMDVIDAINTAVAQVELTGISVSTVET 182
           TPMDEALTRGKMDVIDAINTAVAQ+ELTGISVS++ET
Sbjct: 122 TPMDEALTRGKMDVIDAINTAVAQIELTGISVSSMET 158

[Close]
BLAST of Clc02G24200 vs. NCBI nr
Match: XP_022943784.1 (ankyrin repeat domain-containing protein 2A isoform X1 [Cucurbita moschata] >XP_022943785.1 ankyrin repeat domain-containing protein 2A isoform X1 [Cucurbita moschata])

HSP 1 Score: 272.7 bits (696), Expect = 2.3e-69
Identity = 139/157 (88.54%), Postives = 152/157 (96.82%), Query Frame = 0 

Query: 25  MVAEENRSEEQNTVETTLNDIEALVDAARYNDLDDVISLASAGVCLDSKDSEGRTALHMA 84
           MV EENR EEQ+TV TT +DIEALVDAARYND+DDV+SLASAGV LDSKDSEGRTALHMA
Sbjct: 1   MVVEENRLEEQSTVGTTTDDIEALVDAARYNDVDDVVSLASAGVHLDSKDSEGRTALHMA 60

Query: 85  AANGHLSIIEFLINKGVDVNALNAEKNTPLHWACLNGHIEVVKKLILAGANLSVLNSHER 144
           AANGHLSI+EFLI+KGVDVNALNAEKNTPLHWACLNGHIEVVKKLIL+GAN+S+LNSHE+
Sbjct: 61  AANGHLSIVEFLISKGVDVNALNAEKNTPLHWACLNGHIEVVKKLILSGANVSLLNSHEK 120

Query: 145 TPMDEALTRGKMDVIDAINTAVAQVELTGISVSTVET 182
           TPMDEALTRGKMDVIDAINTAVAQ+ELTGISVS++ET
Sbjct: 121 TPMDEALTRGKMDVIDAINTAVAQIELTGISVSSMET 157

[Close]
BLAST of Clc02G24200 vs. NCBI nr
Match: XP_008449661.1 (PREDICTED: ankyrin repeat-containing protein P16F5.05c isoform X1 [Cucumis melo] >KAA0061771.1 ankyrin repeat-containing protein P16F5.05c isoform X1 [Cucumis melo var. makuwa] >TYJ96113.1 ankyrin repeat-containing protein P16F5.05c isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 271.9 bits (694), Expect = 3.9e-69
Identity = 137/157 (87.26%), Postives = 149/157 (94.90%), Query Frame = 0 

Query: 25  MVAEENRSEEQNTVETTLNDIEALVDAARYNDLDDVISLASAGVCLDSKDSEGRTALHMA 84
           MV E N+SEEQ+TV+TT+NDIE LVDAARYNDL+DV  L SAGVCLDSKDSEGRTALHMA
Sbjct: 1   MVVEANQSEEQSTVQTTMNDIEDLVDAARYNDLEDVERLTSAGVCLDSKDSEGRTALHMA 60

Query: 85  AANGHLSIIEFLINKGVDVNALNAEKNTPLHWACLNGHIEVVKKLILAGANLSVLNSHER 144
           AANGHLSI+EFLIN+GVDVNALNAEKNTPLHWACLNGHIEVVKKLILAGANLS+LNSHE+
Sbjct: 61  AANGHLSIVEFLINRGVDVNALNAEKNTPLHWACLNGHIEVVKKLILAGANLSLLNSHEK 120

Query: 145 TPMDEALTRGKMDVIDAINTAVAQVELTGISVSTVET 182
           TP+DEALTRGKMDVIDAINT  AQ+ELTGI+VSTVET
Sbjct: 121 TPVDEALTRGKMDVIDAINTVAAQIELTGINVSTVET 157

[Close]
BLAST of Clc02G24200 vs. ExPASy Swiss-Prot
Match: Q9HFE7 (Ankyrin repeat-containing protein P16F5.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBP16F5.05c PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.0e-15
Identity = 48/123 (39.02%), Postives = 74/123 (60.16%), Query Frame = 0 

Query: 44  DIEALVDAARYND---LDDVISLASAGVCLDSKDSEGRTALHMAAANGHLSIIEFLI--- 103
           D++ L+ A R  D   LD++I        L  +D  G + LHMA+ANGH+++++ +I   
Sbjct: 2   DVDDLIYACRAADEELLDEIIEKCPQE--LSRRDENGNSGLHMASANGHIAVVQKIIPYL 61

Query: 104 NKGVDVNALNAEKNTPLHWACLNGHIEVVKKLILAGANLSVLNSHERTPMDEALTRGKMD 161
           NK V +NA N   NT +HWA LNGH E+ K L+ AG +  + N +E++P+ EA  R +  
Sbjct: 62  NKEV-INAQNESGNTAMHWAALNGHAEICKLLLEAGGDPHIKNIYEKSPIYEADIRNQQK 121

[Close]
BLAST of Clc02G24200 vs. ExPASy Swiss-Prot
Match: Q9SAR5 (Ankyrin repeat domain-containing protein 2A OS=Arabidopsis thaliana OX=3702 GN=AKR2A PE=1 SV=2)

HSP 1 Score: 83.2 bits (204), Expect = 3.4e-15
Identity = 55/135 (40.74%), Postives = 74/135 (54.81%), Query Frame = 0 

Query: 26  VAEENRSEEQNTVET-TLNDIEALVDAARYNDLDDVISLASAGVCLDSKDSEGRTALHMA 85
           VAEE   EE    +T +L D+E L  A           LAS G   D +DSEGRTALH A
Sbjct: 211 VAEEGEEEESIVHQTASLGDVEGLKAA-----------LASGG-NKDEEDSEGRTALHFA 270

Query: 86  AANGHLSIIEFLINKGVDVNALNAEKNTPLHWACLNGHIEVVKKLILAGANLSVLNSHER 145
              G L   + LI+ G  VNA++  KNTPLH+A   G  E V  L+  GA +++ N  E+
Sbjct: 271 CGYGELKCAQVLIDAGASVNAVDKNKNTPLHYAAGYGRKECVSLLLENGAAVTLQNLDEK 330

Query: 146 TPMDEALTRGKMDVI 160
           TP+D A    +++V+
Sbjct: 331 TPIDVAKLNSQLEVV 333

[Close]
BLAST of Clc02G24200 vs. ExPASy Swiss-Prot
Match: Q1RMI3 (GA-binding protein subunit beta-1 OS=Bos taurus OX=9913 GN=GABPB1 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.3e-14
Identity = 45/116 (38.79%), Postives = 64/116 (55.17%), Query Frame = 0 

Query: 51  AARYNDLDDVISLASAGVCLDSKDSEGRTALHMAAANGHLSIIEFLINKGVDVNALNAEK 110
           AA+Y        L  AGV  D++    RT LHMAA+ GH SI+E L+  G DVNA +  K
Sbjct: 45  AAQYGHYSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLK 104

Query: 111 NTPLHWACLNGHIEVVKKLILAGANLSVLNSHERTPMDEALTRGKMDVIDAINTAV 167
            T LHWA  + H EVV+ LI  GA++   +   +T  D ++  G  D+ + +  A+
Sbjct: 105 MTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAM 160

[Close]
BLAST of Clc02G24200 vs. ExPASy Swiss-Prot
Match: Q06547 (GA-binding protein subunit beta-1 OS=Homo sapiens OX=9606 GN=GABPB1 PE=1 SV=2)

HSP 1 Score: 81.3 bits (199), Expect = 1.3e-14
Identity = 45/116 (38.79%), Postives = 64/116 (55.17%), Query Frame = 0 

Query: 51  AARYNDLDDVISLASAGVCLDSKDSEGRTALHMAAANGHLSIIEFLINKGVDVNALNAEK 110
           AA+Y        L  AGV  D++    RT LHMAA+ GH SI+E L+  G DVNA +  K
Sbjct: 45  AAQYGHYSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLK 104

Query: 111 NTPLHWACLNGHIEVVKKLILAGANLSVLNSHERTPMDEALTRGKMDVIDAINTAV 167
            T LHWA  + H EVV+ LI  GA++   +   +T  D ++  G  D+ + +  A+
Sbjct: 105 MTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAM 160

[Close]
BLAST of Clc02G24200 vs. ExPASy Swiss-Prot
Match: Q0V8G2 (GA-binding protein subunit beta-2 OS=Bos taurus OX=9913 GN=GABPB2 PE=2 SV=2)

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-14
Identity = 43/116 (37.07%), Postives = 65/116 (56.03%), Query Frame = 0 

Query: 51  AARYNDLDDVISLASAGVCLDSKDSEGRTALHMAAANGHLSIIEFLINKGVDVNALNAEK 110
           AA+Y        L  AGV  D++    RT LHMAAA+GH  I+E L+  G DVNA +  K
Sbjct: 45  AAQYGHYSTAEVLLRAGVSRDARTKVDRTPLHMAAADGHAHIVELLVRNGADVNAKDMLK 104

Query: 111 NTPLHWACLNGHIEVVKKLILAGANLSVLNSHERTPMDEALTRGKMDVIDAINTAV 167
            T LHWA  + H +VV+ LI  GA++   +  +++  D AL +   +++  +  A+
Sbjct: 105 MTALHWATEHHHRDVVELLIKYGADVHAFSKFDKSAFDIALEKNNAEILVILQEAM 160

[Close]
BLAST of Clc02G24200 vs. ExPASy TrEMBL
Match: A0A6J1FU05 (ankyrin repeat domain-containing protein 2A isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448432 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 3.4e-71
Identity = 140/157 (89.17%), Postives = 155/157 (98.73%), Query Frame = 0 

Query: 25  MVAEENRSEEQNTVETTLNDIEALVDAARYNDLDDVISLASAGVCLDSKDSEGRTALHMA 84
           +V EENRSEEQ+TVETT+NDIEALV+AARYND+DDV+SLASAGV LDSKDSEGRTALHMA
Sbjct: 2   VVVEENRSEEQSTVETTMNDIEALVEAARYNDVDDVVSLASAGVHLDSKDSEGRTALHMA 61

Query: 85  AANGHLSIIEFLINKGVDVNALNAEKNTPLHWACLNGHIEVVKKLILAGANLSVLNSHER 144
           AANGHLSI+EFLI+KGVDVNALNAEKNTPLHWACLNGHIEVVKKLIL+GAN+S+LNSHE+
Sbjct: 62  AANGHLSIVEFLISKGVDVNALNAEKNTPLHWACLNGHIEVVKKLILSGANVSLLNSHEK 121

Query: 145 TPMDEALTRGKMDVIDAINTAVAQVELTGISVSTVET 182
           TPMDEALTRGKMDVIDAINTAVAQ+ELTGISVS++ET
Sbjct: 122 TPMDEALTRGKMDVIDAINTAVAQIELTGISVSSMET 158

[Close]
BLAST of Clc02G24200 vs. ExPASy TrEMBL
Match: A0A6J1JHQ8 (ankyrin repeat domain-containing protein 2A isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484598 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 7.7e-71
Identity = 139/157 (88.54%), Postives = 155/157 (98.73%), Query Frame = 0 

Query: 25  MVAEENRSEEQNTVETTLNDIEALVDAARYNDLDDVISLASAGVCLDSKDSEGRTALHMA 84
           +V EENRSEEQ+TVETT+NDIEALV+AARYND+DDV+SLASAGV LDSKDSEGRTALHMA
Sbjct: 2   VVVEENRSEEQSTVETTMNDIEALVEAARYNDIDDVVSLASAGVHLDSKDSEGRTALHMA 61

Query: 85  AANGHLSIIEFLINKGVDVNALNAEKNTPLHWACLNGHIEVVKKLILAGANLSVLNSHER 144
           AANGHLSI+EFLI+KGVDVNALNAEKNTPLHWACLNGHIEVV+KLIL+GAN+S+LNSHE+
Sbjct: 62  AANGHLSIVEFLISKGVDVNALNAEKNTPLHWACLNGHIEVVEKLILSGANVSLLNSHEK 121

Query: 145 TPMDEALTRGKMDVIDAINTAVAQVELTGISVSTVET 182
           TPMDEALTRGKMDVIDAINTAVAQ+ELTGISVS++ET
Sbjct: 122 TPMDEALTRGKMDVIDAINTAVAQIELTGISVSSMET 158

[Close]
BLAST of Clc02G24200 vs. ExPASy TrEMBL
Match: A0A6J1FVA9 (ankyrin repeat domain-containing protein 2A isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448432 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 1.1e-69
Identity = 139/157 (88.54%), Postives = 152/157 (96.82%), Query Frame = 0 

Query: 25  MVAEENRSEEQNTVETTLNDIEALVDAARYNDLDDVISLASAGVCLDSKDSEGRTALHMA 84
           MV EENR EEQ+TV TT +DIEALVDAARYND+DDV+SLASAGV LDSKDSEGRTALHMA
Sbjct: 1   MVVEENRLEEQSTVGTTTDDIEALVDAARYNDVDDVVSLASAGVHLDSKDSEGRTALHMA 60

Query: 85  AANGHLSIIEFLINKGVDVNALNAEKNTPLHWACLNGHIEVVKKLILAGANLSVLNSHER 144
           AANGHLSI+EFLI+KGVDVNALNAEKNTPLHWACLNGHIEVVKKLIL+GAN+S+LNSHE+
Sbjct: 61  AANGHLSIVEFLISKGVDVNALNAEKNTPLHWACLNGHIEVVKKLILSGANVSLLNSHEK 120

Query: 145 TPMDEALTRGKMDVIDAINTAVAQVELTGISVSTVET 182
           TPMDEALTRGKMDVIDAINTAVAQ+ELTGISVS++ET
Sbjct: 121 TPMDEALTRGKMDVIDAINTAVAQIELTGISVSSMET 157

[Close]
BLAST of Clc02G24200 vs. ExPASy TrEMBL
Match: A0A5A7V7Q8 (Ankyrin repeat-containing protein P16F5.05c isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00760 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.9e-69
Identity = 137/157 (87.26%), Postives = 149/157 (94.90%), Query Frame = 0 

Query: 25  MVAEENRSEEQNTVETTLNDIEALVDAARYNDLDDVISLASAGVCLDSKDSEGRTALHMA 84
           MV E N+SEEQ+TV+TT+NDIE LVDAARYNDL+DV  L SAGVCLDSKDSEGRTALHMA
Sbjct: 1   MVVEANQSEEQSTVQTTMNDIEDLVDAARYNDLEDVERLTSAGVCLDSKDSEGRTALHMA 60

Query: 85  AANGHLSIIEFLINKGVDVNALNAEKNTPLHWACLNGHIEVVKKLILAGANLSVLNSHER 144
           AANGHLSI+EFLIN+GVDVNALNAEKNTPLHWACLNGHIEVVKKLILAGANLS+LNSHE+
Sbjct: 61  AANGHLSIVEFLINRGVDVNALNAEKNTPLHWACLNGHIEVVKKLILAGANLSLLNSHEK 120

Query: 145 TPMDEALTRGKMDVIDAINTAVAQVELTGISVSTVET 182
           TP+DEALTRGKMDVIDAINT  AQ+ELTGI+VSTVET
Sbjct: 121 TPVDEALTRGKMDVIDAINTVAAQIELTGINVSTVET 157

[Close]
BLAST of Clc02G24200 vs. ExPASy TrEMBL
Match: A0A1S3BNG7 (ankyrin repeat-containing protein P16F5.05c isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491475 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.9e-69
Identity = 137/157 (87.26%), Postives = 149/157 (94.90%), Query Frame = 0 

Query: 25  MVAEENRSEEQNTVETTLNDIEALVDAARYNDLDDVISLASAGVCLDSKDSEGRTALHMA 84
           MV E N+SEEQ+TV+TT+NDIE LVDAARYNDL+DV  L SAGVCLDSKDSEGRTALHMA
Sbjct: 1   MVVEANQSEEQSTVQTTMNDIEDLVDAARYNDLEDVERLTSAGVCLDSKDSEGRTALHMA 60

Query: 85  AANGHLSIIEFLINKGVDVNALNAEKNTPLHWACLNGHIEVVKKLILAGANLSVLNSHER 144
           AANGHLSI+EFLIN+GVDVNALNAEKNTPLHWACLNGHIEVVKKLILAGANLS+LNSHE+
Sbjct: 61  AANGHLSIVEFLINRGVDVNALNAEKNTPLHWACLNGHIEVVKKLILAGANLSLLNSHEK 120

Query: 145 TPMDEALTRGKMDVIDAINTAVAQVELTGISVSTVET 182
           TP+DEALTRGKMDVIDAINT  AQ+ELTGI+VSTVET
Sbjct: 121 TPVDEALTRGKMDVIDAINTVAAQIELTGINVSTVET 157

[Close]
BLAST of Clc02G24200 vs. TAIR 10
Match: AT5G12320.1 (ankyrin repeat family protein )

HSP 1 Score: 189.1 bits (479), Expect = 3.1e-48
Identity = 89/133 (66.92%), Postives = 117/133 (87.97%), Query Frame = 0 

Query: 45  IEALVDAARYNDLDDVISLASAGVCLDSKDSEGRTALHMAAANGHLSIIEFLINKGVDVN 104
           ++ L++AARYND+DD+ +LAS G+ L S+DS+GRTALHMAAANGH++I+E+LI++GVD+N
Sbjct: 12  VDDLLEAARYNDIDDLRTLASDGLSLHSRDSQGRTALHMAAANGHMTIVEYLISEGVDIN 71

Query: 105 ALNAEKNTPLHWACLNGHIEVVKKLILAGANLSVLNSHERTPMDEALTRGKMDVIDAINT 164
           ALN E N PLHWACLNGH+EVVK+LILAGA+LS+LN +ERTPMDEA+   KM++IDAINT
Sbjct: 72  ALNDENNAPLHWACLNGHVEVVKRLILAGASLSLLNRYERTPMDEAIGAEKMEIIDAINT 131

Query: 165 AVAQVELTGISVS 178
            VAQ+EL   S++
Sbjct: 132 TVAQMELENTSMT 144

[Close]
BLAST of Clc02G24200 vs. TAIR 10
Match: AT4G35450.3 (ankyrin repeat-containing protein 2 )

HSP 1 Score: 83.2 bits (204), Expect = 2.4e-16
Identity = 55/135 (40.74%), Postives = 74/135 (54.81%), Query Frame = 0 

Query: 26  VAEENRSEEQNTVET-TLNDIEALVDAARYNDLDDVISLASAGVCLDSKDSEGRTALHMA 85
           VAEE   EE    +T +L D+E L  A           LAS G   D +DSEGRTALH A
Sbjct: 211 VAEEGEEEESIVHQTASLGDVEGLKAA-----------LASGG-NKDEEDSEGRTALHFA 270

Query: 86  AANGHLSIIEFLINKGVDVNALNAEKNTPLHWACLNGHIEVVKKLILAGANLSVLNSHER 145
              G L   + LI+ G  VNA++  KNTPLH+A   G  E V  L+  GA +++ N  E+
Sbjct: 271 CGYGELKCAQVLIDAGASVNAVDKNKNTPLHYAAGYGRKECVSLLLENGAAVTLQNLDEK 330

Query: 146 TPMDEALTRGKMDVI 160
           TP+D A    +++V+
Sbjct: 331 TPIDVAKLNSQLEVV 333

[Close]
BLAST of Clc02G24200 vs. TAIR 10
Match: AT4G35450.4 (ankyrin repeat-containing protein 2 )

HSP 1 Score: 83.2 bits (204), Expect = 2.4e-16
Identity = 55/135 (40.74%), Postives = 74/135 (54.81%), Query Frame = 0 

Query: 26  VAEENRSEEQNTVET-TLNDIEALVDAARYNDLDDVISLASAGVCLDSKDSEGRTALHMA 85
           VAEE   EE    +T +L D+E L  A           LAS G   D +DSEGRTALH A
Sbjct: 173 VAEEGEEEESIVHQTASLGDVEGLKAA-----------LASGG-NKDEEDSEGRTALHFA 232

Query: 86  AANGHLSIIEFLINKGVDVNALNAEKNTPLHWACLNGHIEVVKKLILAGANLSVLNSHER 145
              G L   + LI+ G  VNA++  KNTPLH+A   G  E V  L+  GA +++ N  E+
Sbjct: 233 CGYGELKCAQVLIDAGASVNAVDKNKNTPLHYAAGYGRKECVSLLLENGAAVTLQNLDEK 292

Query: 146 TPMDEALTRGKMDVI 160
           TP+D A    +++V+
Sbjct: 293 TPIDVAKLNSQLEVV 295

[Close]
BLAST of Clc02G24200 vs. TAIR 10
Match: AT4G35450.2 (ankyrin repeat-containing protein 2 )

HSP 1 Score: 83.2 bits (204), Expect = 2.4e-16
Identity = 55/135 (40.74%), Postives = 74/135 (54.81%), Query Frame = 0 

Query: 26  VAEENRSEEQNTVET-TLNDIEALVDAARYNDLDDVISLASAGVCLDSKDSEGRTALHMA 85
           VAEE   EE    +T +L D+E L  A           LAS G   D +DSEGRTALH A
Sbjct: 211 VAEEGEEEESIVHQTASLGDVEGLKAA-----------LASGG-NKDEEDSEGRTALHFA 270

Query: 86  AANGHLSIIEFLINKGVDVNALNAEKNTPLHWACLNGHIEVVKKLILAGANLSVLNSHER 145
              G L   + LI+ G  VNA++  KNTPLH+A   G  E V  L+  GA +++ N  E+
Sbjct: 271 CGYGELKCAQVLIDAGASVNAVDKNKNTPLHYAAGYGRKECVSLLLENGAAVTLQNLDEK 330

Query: 146 TPMDEALTRGKMDVI 160
           TP+D A    +++V+
Sbjct: 331 TPIDVAKLNSQLEVV 333

[Close]
BLAST of Clc02G24200 vs. TAIR 10
Match: AT4G35450.1 (ankyrin repeat-containing protein 2 )

HSP 1 Score: 83.2 bits (204), Expect = 2.4e-16
Identity = 55/135 (40.74%), Postives = 74/135 (54.81%), Query Frame = 0 

Query: 26  VAEENRSEEQNTVET-TLNDIEALVDAARYNDLDDVISLASAGVCLDSKDSEGRTALHMA 85
           VAEE   EE    +T +L D+E L  A           LAS G   D +DSEGRTALH A
Sbjct: 211 VAEEGEEEESIVHQTASLGDVEGLKAA-----------LASGG-NKDEEDSEGRTALHFA 270

Query: 86  AANGHLSIIEFLINKGVDVNALNAEKNTPLHWACLNGHIEVVKKLILAGANLSVLNSHER 145
              G L   + LI+ G  VNA++  KNTPLH+A   G  E V  L+  GA +++ N  E+
Sbjct: 271 CGYGELKCAQVLIDAGASVNAVDKNKNTPLHYAAGYGRKECVSLLLENGAAVTLQNLDEK 330

Query: 146 TPMDEALTRGKMDVI 160
           TP+D A    +++V+
Sbjct: 331 TPIDVAKLNSQLEVV 333

The following BLAST results are available for this feature:
BLAST of Clc02G24200 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038900447.12.9e-7292.95ankyrin repeat-containing protein P16F5.05c isoform X1 [Benincasa hispida][more]
XP_022943787.17.1e-7189.17ankyrin repeat domain-containing protein 2A isoform X2 [Cucurbita moschata][more]
XP_022987034.11.6e-7088.54ankyrin repeat domain-containing protein 2A isoform X2 [Cucurbita maxima][more]
XP_022943784.12.3e-6988.54ankyrin repeat domain-containing protein 2A isoform X1 [Cucurbita moschata] >XP_... [more]
XP_008449661.13.9e-6987.26PREDICTED: ankyrin repeat-containing protein P16F5.05c isoform X1 [Cucumis melo]... [more]
BLAST of Clc02G24200 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9HFE72.0e-1539.02Ankyrin repeat-containing protein P16F5.05c OS=Schizosaccharomyces pombe (strain... [more]
Q9SAR53.4e-1540.74Ankyrin repeat domain-containing protein 2A OS=Arabidopsis thaliana OX=3702 GN=A... [more]
Q1RMI31.3e-1438.79GA-binding protein subunit beta-1 OS=Bos taurus OX=9913 GN=GABPB1 PE=2 SV=1[more]
Q065471.3e-1438.79GA-binding protein subunit beta-1 OS=Homo sapiens OX=9606 GN=GABPB1 PE=1 SV=2[more]
Q0V8G21.7e-1437.07GA-binding protein subunit beta-2 OS=Bos taurus OX=9913 GN=GABPB2 PE=2 SV=2[more]
BLAST of Clc02G24200 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FU053.4e-7189.17ankyrin repeat domain-containing protein 2A isoform X2 OS=Cucurbita moschata OX=... [more]
A0A6J1JHQ87.7e-7188.54ankyrin repeat domain-containing protein 2A isoform X2 OS=Cucurbita maxima OX=36... [more]
A0A6J1FVA91.1e-6988.54ankyrin repeat domain-containing protein 2A isoform X1 OS=Cucurbita moschata OX=... [more]
A0A5A7V7Q81.9e-6987.26Ankyrin repeat-containing protein P16F5.05c isoform X1 OS=Cucumis melo var. maku... [more]
A0A1S3BNG71.9e-6987.26ankyrin repeat-containing protein P16F5.05c isoform X1 OS=Cucumis melo OX=3656 G... [more]
BLAST of Clc02G24200 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G12320.13.1e-4866.92ankyrin repeat family protein [more]
AT4G35450.32.4e-1640.74ankyrin repeat-containing protein 2 [more]
AT4G35450.42.4e-1640.74ankyrin repeat-containing protein 2 [more]
AT4G35450.22.4e-1640.74ankyrin repeat-containing protein 2 [more]
AT4G35450.12.4e-1640.74ankyrin repeat-containing protein 2 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002110Ankyrin repeatPRINTSPR01415ANKYRINcoord: 77..92
score: 46.84
coord: 125..139
score: 33.24
IPR002110Ankyrin repeatSMARTSM00248ANK_2acoord: 76..105
e-value: 4.3E-8
score: 42.9
coord: 142..171
e-value: 700.0
score: 6.2
coord: 109..138
e-value: 4.6E-7
score: 39.5
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 109..141
score: 13.223619
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 76..108
score: 15.62752
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 114..165
e-value: 2.1E-13
score: 52.2
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 36..113
e-value: 3.4E-23
score: 83.5
IPR036770Ankyrin repeat-containing domain superfamilySUPERFAMILY48403Ankyrin repeatcoord: 43..167
NoneNo IPR availablePFAMPF13857Ank_5coord: 96..150
e-value: 6.5E-12
score: 45.4
NoneNo IPR availablePANTHERPTHR24134ANKYRIN REPEAT-CONTAINING PROTEIN DDB_G0279043coord: 25..177
NoneNo IPR availablePANTHERPTHR24134:SF7ANKYRIN REPEAT FAMILY PROTEINcoord: 25..177
NoneNo IPR availablePROSITEPS50297ANK_REP_REGIONcoord: 109..140
score: 11.850801
NoneNo IPR availablePROSITEPS50297ANK_REP_REGIONcoord: 76..107
score: 14.397814

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc02G24200.2Clc02G24200.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding