Clc02G18860 (gene) Watermelon (cordophanus) v2

Overview
NameClc02G18860
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionLoricrin-like
LocationClcChr02: 31401660 .. 31401952 (+)
RNA-Seq ExpressionClc02G18860
SyntenyClc02G18860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATATATTAAAAATAACTAATATCATTCAAAAAATGGGAAGGCCAATTCTTGTTGCCACCGGCGCTGGCTTCAGAGACGTCAACTTGGTGAGCTCCGGCGGCCTATTTTTGCTATCTGTCATCTTACTATCTATCTCTCTCATATCAATGGTCATATTTGCCTGCGGCGACTCCGGTGACCCTCAAAAGAAAAGATATAATGGCGGCGGTGGAGGTTGCGGCGGCGGAGGTTGTGGTGGTGGTGGTTGTGGGGGGTGTGGAGGAGGCTGATGTCAATGTGTTTTCCGAATTTG

mRNA sequence

TATATATTAAAAATAACTAATATCATTCAAAAAATGGGAAGGCCAATTCTTGTTGCCACCGGCGCTGGCTTCAGAGACGTCAACTTGGTGAGCTCCGGCGGCCTATTTTTGCTATCTGTCATCTTACTATCTATCTCTCTCATATCAATGGTCATATTTGCCTGCGGCGACTCCGGTGACCCTCAAAAGAAAAGATATAATGGCGGCGGTGGAGGTTGCGGCGGCGGAGGTTGTGGTGGTGGTGGTTGTGGGGGGTGTGGAGGAGGCTGATGTCAATGTGTTTTCCGAATTTG

Coding sequence (CDS)

ATGGGAAGGCCAATTCTTGTTGCCACCGGCGCTGGCTTCAGAGACGTCAACTTGGTGAGCTCCGGCGGCCTATTTTTGCTATCTGTCATCTTACTATCTATCTCTCTCATATCAATGGTCATATTTGCCTGCGGCGACTCCGGTGACCCTCAAAAGAAAAGATATAATGGCGGCGGTGGAGGTTGCGGCGGCGGAGGTTGTGGTGGTGGTGGTTGTGGGGGGTGTGGAGGAGGCTGA

Protein sequence

MGRPILVATGAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYNGGGGGCGGGGCGGGGCGGCGGG
Homology
BLAST of Clc02G18860 vs. NCBI nr
Match: KAG6604774.1 (hypothetical protein SDJN03_02091, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.5 bits (210), Expect = 2.2e-13
Identity = 60/81 (74.07%), Postives = 66/81 (81.48%), Query Frame = 0

Query: 1  MGRPILVAT--GAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYNGG 60
          MGRPIL A   G GF+DV LVSSGGLFLLS ILLSISL+SM+IFACG+S DP++K   GG
Sbjct: 1  MGRPILAAAGGGGGFQDVTLVSSGGLFLLSAILLSISLVSMIIFACGNSNDPKRKDGGGG 60

Query: 61 -GGGCGGGGCG-GGGCGGCGG 78
           GGG GGGG G GGGCGGCGG
Sbjct: 61 CGGGDGGGGGGCGGGCGGCGG 81

BLAST of Clc02G18860 vs. NCBI nr
Match: KAG6603229.1 (hypothetical protein SDJN03_03838, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.4 bits (189), Expect = 6.0e-11
Identity = 50/77 (64.94%), Postives = 57/77 (74.03%), Query Frame = 0

Query: 1  MGRPILVATGAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYNGGGG 60
          MGRPI  A G G  DV L SSGGL LL+ IL+S+SL+SM+IFACGDS    K++ NGGG 
Sbjct: 1  MGRPIPAADGGGLGDVTLFSSGGLLLLATILMSLSLVSMIIFACGDSSRKNKRKRNGGG- 60

Query: 61 GCGGGGCGGGGCGGCGG 78
            GG GCGGGGCGG GG
Sbjct: 61 --GGAGCGGGGCGGGGG 74

BLAST of Clc02G18860 vs. NCBI nr
Match: KAG6603228.1 (hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.3 bits (181), Expect = 5.1e-10
Identity = 53/81 (65.43%), Postives = 60/81 (74.07%), Query Frame = 0

Query: 1  MGRPILVATGAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYNGGG- 60
          MGR I  A G G  DV L SSGGL LL+ +LLS+SL+SM+IFACGDS    K++ NGGG 
Sbjct: 1  MGRSIPAADGGGLGDVTLFSSGGLLLLATVLLSLSLVSMIIFACGDSSSDNKRKRNGGGC 60

Query: 61 GGCGGGGCGG--GGCGGCGGG 79
          GG GGGGCGG  GG GGCGGG
Sbjct: 61 GGGGGGGCGGDVGGGGGCGGG 81

BLAST of Clc02G18860 vs. NCBI nr
Match: CAB4273122.1 (unnamed protein product [Prunus armeniaca] >CAB4303638.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 65.1 bits (157), Expect = 3.1e-07
Identity = 50/86 (58.14%), Postives = 57/86 (66.28%), Query Frame = 0

Query: 1  MGRPILVATGAGFRD---VNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYNG 60
          M R   V  G G  +   +   +SGG+FLL +IL+S+SLISMVIFACGD     KKRY G
Sbjct: 1  MARGTYVVLGGGHAEELGIMQDNSGGIFLLCMILMSLSLISMVIFACGDDEGSSKKRYGG 60

Query: 61 GGGGC-----GGGGCGGGGCGGCGGG 79
          GGGG      GGGGCGGGG GGCGGG
Sbjct: 61 GGGGAAAAAGGGGGCGGGGGGGCGGG 86

BLAST of Clc02G18860 vs. NCBI nr
Match: GAY54286.1 (hypothetical protein CUMW_155540 [Citrus unshiu])

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-06
Identity = 49/84 (58.33%), Postives = 57/84 (67.86%), Query Frame = 0

Query: 1  MGRPILVATGAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYNG--- 60
          MGR + V   A   + N    GGL LL +++ SIS+ISMVIFACGD G P++ R NG   
Sbjct: 1  MGRQLSVLAAAAHEESNF---GGLVLLCMVVASISMISMVIFACGDDGHPKRHRTNGGFA 60

Query: 61 -GGGGC-GGGGCGGGGC--GGCGG 78
           GGGGC GGGGCGGGGC  GGCGG
Sbjct: 61 PGGGGCGGGGGCGGGGCGGGGCGG 81

BLAST of Clc02G18860 vs. ExPASy TrEMBL
Match: A0A6J5WYX6 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS20264 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.5e-07
Identity = 50/86 (58.14%), Postives = 57/86 (66.28%), Query Frame = 0

Query: 1  MGRPILVATGAGFRD---VNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYNG 60
          M R   V  G G  +   +   +SGG+FLL +IL+S+SLISMVIFACGD     KKRY G
Sbjct: 1  MARGTYVVLGGGHAEELGIMQDNSGGIFLLCMILMSLSLISMVIFACGDDEGSSKKRYGG 60

Query: 61 GGGGC-----GGGGCGGGGCGGCGGG 79
          GGGG      GGGGCGGGG GGCGGG
Sbjct: 61 GGGGAAAAAGGGGGCGGGGGGGCGGG 86

BLAST of Clc02G18860 vs. ExPASy TrEMBL
Match: A0A2H5PPJ4 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_155540 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.7e-07
Identity = 49/84 (58.33%), Postives = 57/84 (67.86%), Query Frame = 0

Query: 1  MGRPILVATGAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYNG--- 60
          MGR + V   A   + N    GGL LL +++ SIS+ISMVIFACGD G P++ R NG   
Sbjct: 1  MGRQLSVLAAAAHEESNF---GGLVLLCMVVASISMISMVIFACGDDGHPKRHRTNGGFA 60

Query: 61 -GGGGC-GGGGCGGGGC--GGCGG 78
           GGGGC GGGGCGGGGC  GGCGG
Sbjct: 61 PGGGGCGGGGGCGGGGCGGGGCGG 81

BLAST of Clc02G18860 vs. ExPASy TrEMBL
Match: A0A0A0LJD5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G062640 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.4e-05
Identity = 45/78 (57.69%), Postives = 54/78 (69.23%), Query Frame = 0

Query: 1  MGRPILVATGAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKR--YNGG 60
          MGRPI    G    DV     GGL LLS+ILLSISL+SM+IFAC +  + +++R   +GG
Sbjct: 1  MGRPIAATIG----DVTTSIPGGLSLLSLILLSISLLSMIIFACSNFFNTRRRRGGDDGG 60

Query: 61 GGG--CGGGGCGGGGCGG 75
           GG  CGGGGCGGGGCGG
Sbjct: 61 AGGCACGGGGCGGGGCGG 74

BLAST of Clc02G18860 vs. ExPASy TrEMBL
Match: V4UCP2 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017260mg PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.1e-05
Identity = 47/95 (49.47%), Postives = 56/95 (58.95%), Query Frame = 0

Query: 1  MGRPILVATGAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYNG--- 60
          M R +LV   A   + N    GG+F L +++ S S+ISMVIFACGD G P+K R +G   
Sbjct: 1  MARELLVLAAAAHAESNF---GGIFSLCMVVASFSMISMVIFACGDDGSPKKNRTSGGFV 60

Query: 61 ------------GGGGC--GGGGCGGGGCGGCGGG 79
                      GGGGC  GGGGCGGGGCGG GGG
Sbjct: 61 GGGAGLGGLGGAGGGGCGGGGGGCGGGGCGGGGGG 92

BLAST of Clc02G18860 vs. ExPASy TrEMBL
Match: A0A251PYS0 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G117200 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 9.1e-05
Identity = 45/88 (51.14%), Postives = 53/88 (60.23%), Query Frame = 0

Query: 1  MGRPILVATGAGFRD---VNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYNG 60
          M R   V  G G  +   +   +SG + LL +IL+S++LISMVIFACGD     KKRY G
Sbjct: 1  MSRGAYVFLGGGHAEELGIMQDNSGTILLLCMILMSLTLISMVIFACGDDEGSSKKRYGG 60

Query: 61 GGGGC---------GGGGCGGGGCGGCG 77
          GGGG          GGGGCGGGGCGG G
Sbjct: 61 GGGGIVGDGGAACGGGGGCGGGGCGGGG 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6604774.12.2e-1374.07hypothetical protein SDJN03_02091, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6603229.16.0e-1164.94hypothetical protein SDJN03_03838, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6603228.15.1e-1065.43hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sorori... [more]
CAB4273122.13.1e-0758.14unnamed protein product [Prunus armeniaca] >CAB4303638.1 unnamed protein product... [more]
GAY54286.11.2e-0658.33hypothetical protein CUMW_155540 [Citrus unshiu][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J5WYX61.5e-0758.14Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS20264 PE=4 S... [more]
A0A2H5PPJ45.7e-0758.33Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_155540 PE=4 SV=1[more]
A0A0A0LJD52.4e-0557.69Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G062640 PE=4 SV=1[more]
V4UCP24.1e-0549.47Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017260mg PE=4 ... [more]
A0A251PYS09.1e-0551.14Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G117200 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35420OS02G0198500 PROTEINcoord: 1..78
NoneNo IPR availablePANTHERPTHR35420:SF5SUBFAMILY NOT NAMEDcoord: 1..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc02G18860.1Clc02G18860.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane