Clc02G18410 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G18410
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Cell wall protein
Location	ClcChr02: 30948331 .. 30949953 (-)
RNA-Seq Expression	Clc02G18410
Synteny	Clc02G18410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTACAGAACCATACCTTCTCTGCTCCTTATCTTCCTCGTGATCCTCACAATAACTGGAGAAGCAGTTGCAGCGCGCAATTTTCGCGGAAGGTCGAGCATTGATGACGATAAGAAACAGCCTCAGTGGCTGGTTGGATATGATGGGGTCAGTGTGCTCGTTCCCGGCATTGGACGGATCACATTGTCACCATATGACAAAGGCAGTCATGGAGGAGGGCATGCGGGTTTATATGGCAGTAACCCAGCTCCACGACGTCGATATATTCCAGGAGGGGATGATAATTTCATTCCAAATCCTGGATTTGAGGTGCCAATCCCTGCCAATATTGATGGTGTTAAAGAAAAATCCTATCCTTGAGTTCATCTAGCAAAAATCATCAGAATAAGTCTGCAGTTTTCATCTGCCACTTCCATGCTCTTTTTGCATAGTTTCCAGTCTGATTCTACTGAATTATGAATATAAGCATCAAGGGAGAAATAAAGTTACTGGCTTTGATGAGTCAGTGTCCTATTGAGGTAGATGTGTAGTAATGAACTTGCAGTTGTTGTAAGATAATTAATGCTTAATTCAGAGAAAAAAATAAAGAATCTCAATGTAAGATGTTTTTCACTAATAGTAGAATCAATGTAGTTAAGAAAAAATGTATATGCCAGTTTCTCAGCTAATGTATGGCAAAACATTTATGAGCTATATGAAGATATACGCTTAATGATTATCCCATCAATTGCATTTAGCACATCCTACTAAAATTGATAGTCTTTCGGACCACTAGGGGGGCAAAGTCTAGCTCAATACTTCAACGTAATTATTCACCAAACATGATTCTTTACGATGATAACAATTAATAGAGGAAAAAAACAGGTACACAATTGCAACAAAGGAAATCATTCAGAAAACCAAACTAGACCGAGAAAGAAAAAAATAATCATGAACATGTATAGAAATGATACAACCTAGTCTAGATCCTTCATCCTTGTACGTCTAAGAGCCACATCCGTACTTCTCACTGACCAGCATTTCCTTCATTTGGATATAACGTTGAATTTAAGAATCATAAATTTTCAACTACTCTGGTGGGAACAGCAGGGTACAGATCAGTTCGAAGATACTTCAAGACAAAATTAGGGGAACCCCAAAAAAATAACATATGGAAAAACGTTAACAGGATTGGAATGAGACAGGGCATTGAAATAATTTCGTCCTCCCAAAACTTTTATGGGTTAGGAAATTAACTCTTGAAGGATGGATATTTGGATTTCGCTTTCAATCAAAATGAAATGTCCAGCACCCAAATGTGATAAACATCAGTAGCCACAAACAGTTAAAAAACAAACCCCAATACGTGTATCAAGAATCAAATGGACATGATAAAGCAAAATGAAAATGGAGAAAATTAAAACCTAATCTTCAAAATGGAGTGTGTTTGGAAAGCCTCAAACACCGAACATCTTGAAAAGGATGAAGAAGAGGAAGCCAAGAAAGATGAATAAGAAGAGGTAATCCACGAAGACAAAAAAGGAAGTGGACCCATGATTTCTCTTCTGCTTCTTTCCAGAGACATTGTTATCTTTGGCTACCCCGTCAAGTGGCTCCAGTTTCGCCATTATTGAAGCTTAG

mRNA sequence

ATGGCTTACAGAACCATACCTTCTCTGCTCCTTATCTTCCTCGTGATCCTCACAATAACTGGAGAAGCAGTTGCAGCGCGCAATTTTCGCGGAAGGTCGAGCATTGATGACGATAAGAAACAGCCTCAGTGGCTGGTTGGATATGATGGGGTCAGTGTGCTCGTTCCCGGCATTGGACGGATCACATTGTCACCATATGACAAAGGCAGTCATGGAGGAGGGCATGCGGGTTTATATGGCAGTAACCCAGCTCCACGACGTCGATATATTCCAGGAGGGGATGATAATTTCATTCCAAATCCTGGATTTGAGGTGCCAATCCCTGCCAATATTGATGAGACATTGTTATCTTTGGCTACCCCGTCAAGTGGCTCCAGTTTCGCCATTATTGAAGCTTAG

Coding sequence (CDS)

ATGGCTTACAGAACCATACCTTCTCTGCTCCTTATCTTCCTCGTGATCCTCACAATAACTGGAGAAGCAGTTGCAGCGCGCAATTTTCGCGGAAGGTCGAGCATTGATGACGATAAGAAACAGCCTCAGTGGCTGGTTGGATATGATGGGGTCAGTGTGCTCGTTCCCGGCATTGGACGGATCACATTGTCACCATATGACAAAGGCAGTCATGGAGGAGGGCATGCGGGTTTATATGGCAGTAACCCAGCTCCACGACGTCGATATATTCCAGGAGGGGATGATAATTTCATTCCAAATCCTGGATTTGAGGTGCCAATCCCTGCCAATATTGATGAGACATTGTTATCTTTGGCTACCCCGTCAAGTGGCTCCAGTTTCGCCATTATTGAAGCTTAG

Protein sequence

MAYRTIPSLLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGRITLSPYDKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPNPGFEVPIPANIDETLLSLATPSSGSSFAIIEA

Homology

[Close]

BLAST of Clc02G18410 vs. NCBI nr
Match: XP_022970746.1 (putative cell wall protein [Cucurbita maxima])

HSP 1 Score: 174.5 bits (441), Expect = 6.1e-40
Identity = 87/111 (78.38%), Postives = 94/111 (84.68%), Query Frame = 0


Query: 1   MAYRTIPSLLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGR 60
           MA RTI SLL  F+VIL I GEAVAARN   RSSI DDKKQP+W+ G+DGVSVL+PGIGR
Sbjct: 1   MANRTIASLLATFIVILAIAGEAVAARNVHERSSI-DDKKQPEWVAGHDGVSVLIPGIGR 60

Query: 61  ITLSPYDKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPNPGFEVPIPANI 112
            TLSP+DKGS G G AG YGSNPAPRR+YIPGGDDNFIPNPGFEVPIPA I
Sbjct: 61  FTLSPHDKGSSGEGQAGSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPAKI 110

[Close]

BLAST of Clc02G18410 vs. NCBI nr
Match: XP_022140620.1 (putative cell wall protein [Momordica charantia])

HSP 1 Score: 166.8 bits (421), Expect = 1.3e-37
Identity = 86/112 (76.79%), Postives = 94/112 (83.93%), Query Frame = 0


Query: 1   MAYRTIPSLL-LIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIG 60
           MAYRTI SLL ++ ++IL + GEA AARN R +SSI DDKKQPQWLVGYDGVSVL+PGIG
Sbjct: 1   MAYRTISSLLPILIIIILAVAGEAAAARNAREKSSI-DDKKQPQWLVGYDGVSVLIPGIG 60

Query: 61  RITLSPYDKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPNPGFEVPIPANI 112
           RITL PYDKGS  G HAG YGSNPA   +YIPGGDDNFIPNPGFEVP PANI
Sbjct: 61  RITLPPYDKGSF-GEHAGSYGSNPASSGQYIPGGDDNFIPNPGFEVPNPANI 110

[Close]

BLAST of Clc02G18410 vs. NCBI nr
Match: KAA0065341.1 (putative cell wall protein [Cucumis melo var. makuwa] >TYJ96609.1 putative cell wall protein [Cucumis melo var. makuwa])

HSP 1 Score: 143.7 bits (361), Expect = 1.2e-30
Identity = 75/111 (67.57%), Postives = 84/111 (75.68%), Query Frame = 0


Query: 1   MAYRTIPSLLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGR 60
           MA+R  PSL  IFLVIL +TGEAVAAR+F            P+        SVL+PGIGR
Sbjct: 1   MAHRITPSLFPIFLVILAMTGEAVAARDF------------PE--------SVLIPGIGR 60

Query: 61  ITLSPYDKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPNPGFEVPIPANI 112
           ITLSPYDKGSHGGGH+  YGSNPAP+R+YIPGGDDNFIPNPG+EVPIPANI
Sbjct: 61  ITLSPYDKGSHGGGHSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANI 91

[Close]

BLAST of Clc02G18410 vs. NCBI nr
Match: PQQ05090.1 (hypothetical protein Pyn_37066 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 95.9 bits (237), Expect = 2.8e-16
Identity = 50/112 (44.64%), Postives = 66/112 (58.93%), Query Frame = 0


Query: 9   LLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGRITLSPY-- 68
           L+ + +V+L ITG+AVA R+   +    DDKKQP+W +G+DG S L+PGIGR+   P   
Sbjct: 12  LISVLVVLLAITGQAVAGRSVPTK----DDKKQPEWFIGHDG-SYLIPGIGRVIFPPLHN 71

Query: 69  --------DKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPNPGFEVPIPAN 111
                   D GS G       G  P+    Y+PGGDD F+PNPG+EVP P N
Sbjct: 72  VVPQTPFPDNGSTGSTGGSGSGETPSTGHDYVPGGDDTFVPNPGYEVPTPGN 118

[Close]

BLAST of Clc02G18410 vs. NCBI nr
Match: XP_034206933.1 (putative cell wall protein [Prunus dulcis] >VVA27151.1 PREDICTED: putative cell [Prunus dulcis])

HSP 1 Score: 95.5 bits (236), Expect = 3.6e-16
Identity = 52/115 (45.22%), Postives = 69/115 (60.00%), Query Frame = 0


Query: 9   LLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGRITLSPYDK 68
           L+ I +V+L ITG+AVA R+   +    DDKKQP+W +G+DG S L+PGIGR+ + P   
Sbjct: 12  LISILVVLLAITGQAVAGRSVPTK----DDKKQPEWFIGHDG-SYLIPGIGRVLIPPLHN 71

Query: 69  -------------GSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPNPGFEVPIPAN 111
                        GS GG  +   G  P+    Y+PGGDD F+PNPG+EVPIP N
Sbjct: 72  VVPQTPFPNNGRTGSTGGSGS---GETPSTGHDYVPGGDDTFVPNPGYEVPIPGN 118

[Close]

BLAST of Clc02G18410 vs. ExPASy Swiss-Prot
Match: P47925 (Putative cell wall protein OS=Arabidopsis thaliana OX=3702 GN=At2g20870 PE=2 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 7.1e-07
Identity = 39/122 (31.97%), Postives = 56/122 (45.90%), Query Frame = 0


Query: 1   MAYRTIPSLLLIFLVILTI-TGEAVAARNFRGRSSIDDDKKQPQWLVGYD-GVSVLVPGI 60
           MA   I S +++ ++ L + + E V+      +S    D K P +LV  +   ++L+PG+
Sbjct: 1   MASSLITSAVIVVVLSLVLGSVEQVSGLRHVPKSPKTTDVKHPDFLVTIEPKPTILIPGV 60

Query: 61  GRITLSPYDKGSH------------GGGHAGLYGSNPAPRRRYIPGGDDNFIPNPGFEVP 109
           GR  L P  K               GGG     G   A     +PGGDD  +PNPGFE P
Sbjct: 61  GRFLLPPKCKKPFYPYNPVTGAPLTGGGIPSYNGGQGAGPHTQLPGGDDTLVPNPGFEAP 120

[Close]

BLAST of Clc02G18410 vs. ExPASy TrEMBL
Match: A0A6J1I1F6 (putative cell wall protein OS=Cucurbita maxima OX=3661 GN=LOC111469644 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 3.0e-40
Identity = 87/111 (78.38%), Postives = 94/111 (84.68%), Query Frame = 0


Query: 1   MAYRTIPSLLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGR 60
           MA RTI SLL  F+VIL I GEAVAARN   RSSI DDKKQP+W+ G+DGVSVL+PGIGR
Sbjct: 1   MANRTIASLLATFIVILAIAGEAVAARNVHERSSI-DDKKQPEWVAGHDGVSVLIPGIGR 60

Query: 61  ITLSPYDKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPNPGFEVPIPANI 112
            TLSP+DKGS G G AG YGSNPAPRR+YIPGGDDNFIPNPGFEVPIPA I
Sbjct: 61  FTLSPHDKGSSGEGQAGSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPAKI 110

[Close]

BLAST of Clc02G18410 vs. ExPASy TrEMBL
Match: A0A6J1CFL0 (putative cell wall protein OS=Momordica charantia OX=3673 GN=LOC111011227 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 6.2e-38
Identity = 86/112 (76.79%), Postives = 94/112 (83.93%), Query Frame = 0


Query: 1   MAYRTIPSLL-LIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIG 60
           MAYRTI SLL ++ ++IL + GEA AARN R +SSI DDKKQPQWLVGYDGVSVL+PGIG
Sbjct: 1   MAYRTISSLLPILIIIILAVAGEAAAARNAREKSSI-DDKKQPQWLVGYDGVSVLIPGIG 60

Query: 61  RITLSPYDKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPNPGFEVPIPANI 112
           RITL PYDKGS  G HAG YGSNPA   +YIPGGDDNFIPNPGFEVP PANI
Sbjct: 61  RITLPPYDKGSF-GEHAGSYGSNPASSGQYIPGGDDNFIPNPGFEVPNPANI 110

[Close]

BLAST of Clc02G18410 vs. ExPASy TrEMBL
Match: A0A5D3BC54 (Putative cell wall protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold464G00120 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 5.6e-31
Identity = 75/111 (67.57%), Postives = 84/111 (75.68%), Query Frame = 0


Query: 1   MAYRTIPSLLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGR 60
           MA+R  PSL  IFLVIL +TGEAVAAR+F            P+        SVL+PGIGR
Sbjct: 1   MAHRITPSLFPIFLVILAMTGEAVAARDF------------PE--------SVLIPGIGR 60

Query: 61  ITLSPYDKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPNPGFEVPIPANI 112
           ITLSPYDKGSHGGGH+  YGSNPAP+R+YIPGGDDNFIPNPG+EVPIPANI
Sbjct: 61  ITLSPYDKGSHGGGHSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANI 91

[Close]

BLAST of Clc02G18410 vs. ExPASy TrEMBL
Match: A0A0A0KCX5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124140 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.4e-18
Identity = 61/111 (54.95%), Postives = 70/111 (63.06%), Query Frame = 0


Query: 1   MAYRTIPSLLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGR 60
           MA+R IPS+L IFLVIL +TGEAVA                         VSVL+PGIGR
Sbjct: 1   MAHRIIPSMLPIFLVILAMTGEAVAL---------------------CSTVSVLIPGIGR 60

Query: 61  ITLSPYDKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPNPGFEVPIPANI 112
           +TLS        GGH+  YGSNPAPRR+YIPGGD NFIPNPG+EV I A+I
Sbjct: 61  LTLS-------RGGHSSSYGSNPAPRRQYIPGGDGNFIPNPGYEVRITADI 83

[Close]

BLAST of Clc02G18410 vs. ExPASy TrEMBL
Match: A0A314YGG0 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_37066 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-16
Identity = 50/112 (44.64%), Postives = 66/112 (58.93%), Query Frame = 0


Query: 9   LLLIFLVILTITGEAVAARNFRGRSSIDDDKKQPQWLVGYDGVSVLVPGIGRITLSPY-- 68
           L+ + +V+L ITG+AVA R+   +    DDKKQP+W +G+DG S L+PGIGR+   P   
Sbjct: 12  LISVLVVLLAITGQAVAGRSVPTK----DDKKQPEWFIGHDG-SYLIPGIGRVIFPPLHN 71

Query: 69  --------DKGSHGGGHAGLYGSNPAPRRRYIPGGDDNFIPNPGFEVPIPAN 111
                   D GS G       G  P+    Y+PGGDD F+PNPG+EVP P N
Sbjct: 72  VVPQTPFPDNGSTGSTGGSGSGETPSTGHDYVPGGDDTFVPNPGYEVPTPGN 118

[Close]

BLAST of Clc02G18410 vs. TAIR 10
Match: AT2G20870.1 (cell wall protein precursor, putative )

HSP 1 Score: 55.1 bits (131), Expect = 5.1e-08
Identity = 39/122 (31.97%), Postives = 56/122 (45.90%), Query Frame = 0


Query: 1   MAYRTIPSLLLIFLVILTI-TGEAVAARNFRGRSSIDDDKKQPQWLVGYD-GVSVLVPGI 60
           MA   I S +++ ++ L + + E V+      +S    D K P +LV  +   ++L+PG+
Sbjct: 1   MASSLITSAVIVVVLSLVLGSVEQVSGLRHVPKSPKTTDVKHPDFLVTIEPKPTILIPGV 60

Query: 61  GRITLSPYDKGSH------------GGGHAGLYGSNPAPRRRYIPGGDDNFIPNPGFEVP 109
           GR  L P  K               GGG     G   A     +PGGDD  +PNPGFE P
Sbjct: 61  GRFLLPPKCKKPFYPYNPVTGAPLTGGGIPSYNGGQGAGPHTQLPGGDDTLVPNPGFEAP 120

The following BLAST results are available for this feature:

BLAST of Clc02G18410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022970746.1	6.1e-40	78.38	putative cell wall protein [Cucurbita maxima]	[more]
XP_022140620.1	1.3e-37	76.79	putative cell wall protein [Momordica charantia]	[more]
KAA0065341.1	1.2e-30	67.57	putative cell wall protein [Cucumis melo var. makuwa] >TYJ96609.1 putative cell ...	[more]
PQQ05090.1	2.8e-16	44.64	hypothetical protein Pyn_37066 [Prunus yedoensis var. nudiflora]	[more]
XP_034206933.1	3.6e-16	45.22	putative cell wall protein [Prunus dulcis] >VVA27151.1 PREDICTED: putative cell ...	[more]

BLAST of Clc02G18410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P47925	7.1e-07	31.97	Putative cell wall protein OS=Arabidopsis thaliana OX=3702 GN=At2g20870 PE=2 SV=...	[more]

BLAST of Clc02G18410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I1F6	3.0e-40	78.38	putative cell wall protein OS=Cucurbita maxima OX=3661 GN=LOC111469644 PE=4 SV=1	[more]
A0A6J1CFL0	6.2e-38	76.79	putative cell wall protein OS=Momordica charantia OX=3673 GN=LOC111011227 PE=4 S...	[more]
A0A5D3BC54	5.6e-31	67.57	Putative cell wall protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A0A0KCX5	1.4e-18	54.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124140 PE=4 SV=1	[more]
A0A314YGG0	1.3e-16	44.64	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_370...	[more]

BLAST of Clc02G18410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20870.1	5.1e-08	31.97	cell wall protein precursor, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36733:SF1	CELL WALL PROTEIN-RELATED	coord: 5..111
IPR034565	Putative cell wall protein	PANTHER	PTHR36733	CELL WALL PROTEIN-RELATED	coord: 5..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G18410.2	Clc02G18410.2	mRNA