Clc02G16430 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G16430
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Histone H2A
Location	ClcChr02: 28908935 .. 28909997 (+)
RNA-Seq Expression	Clc02G16430
Synteny	Clc02G16430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGCCGTCCGATCCTTTTTCGAATCAAACAACCATCCCGCCATCACAGCCCCTATATATTCAACCTCCAATTCAATTCCGCCATCTCAATCGTCAGTAAAATCGCAAGTAAACTCTCATCTCAGATTCCAAGAATTCTACAATGGAGGTAACTAAGGGCGCCGGAGGAAGAAAAGGATGCGACAGAACTAAGGTCTCCAAGTCCGTCAAGGCCGGACTCCAATTCCCCGTCGGAAGAATCGGACGGTACCTCAAGAAAGGCCGTTACGCAAAGCGCACTGCCGCCGGTGCTCCGATCTACCTGGCTGCTGTCCTCGAATATCTCGCCGCTGAGGTGATTACTAAATTAAGATGAGATTCATCTCTCATTCGCATTCTCAGTATCAAATCAGTTTATGATTTCTGAAATCTGTTATGTTTTGTAATATAGGTTTTGGAATTGGCTGGGAATGCAGCGCGTGACAACAAGAAGAATAGGATAAACCCTAGGCATGTTCTTTTGGCTGTGAGGAACGATGAGGAGCTTGGTAAATTGCTTCAAGGAGTCACCATTGCAAGTGGTGGAGTTCTTCCGAACATCAATCCGGTTCTGCTTCCAAAGAAGACATCATCGAATTCCACTCCTACTGCTGAGAAGGCTCAGAAATCGCCAAAGAAGGCCTAAAATTAACAATAGGTTTCCGAGAATTATTTAAACTTTTTTCTCTTTCCTTTTTGTAAAAATTTAGGGCTCTCTCCTTGAATCCTTAGTTTCTTAGAAAAAACCGATGGTTTTGATCTTCTGGTTTGCGTCTTATGTACGTATCCGTTTCACAATATCTAATGGAAATCTTATCGTTTCTCTAGTTTCTTCGTTTTCTGATTTGCACTCTGCTTAATCTCAGTTTCTCATAATTTGCATCAAAACTCATTAACGAACGCTCTAAATGGAATTTCAATAGATGTTCGATCAACTGCATACGACAACGAAAATGCTCTCCCGGAAATGAATAATAATTTGAAGATGATTTGTAGGAAACCTTGAGGATTGAGTTACGTCTCAGATAATAATGAATTTATATTCG

mRNA sequence

CAGCCGTCCGATCCTTTTTCGAATCAAACAACCATCCCGCCATCACAGCCCCTATATATTCAACCTCCAATTCAATTCCGCCATCTCAATCGTCAGTAAAATCGCAAGTAAACTCTCATCTCAGATTCCAAGAATTCTACAATGGAGGTAACTAAGGGCGCCGGAGGAAGAAAAGGATGCGACAGAACTAAGGTCTCCAAGTCCGTCAAGGCCGGACTCCAATTCCCCGTCGGAAGAATCGGACGGTACCTCAAGAAAGGCCGTTACGCAAAGCGCACTGCCGCCGGTGCTCCGATCTACCTGGCTGCTGTCCTCGAATATCTCGCCGCTGAGGTTTTGGAATTGGCTGGGAATGCAGCGCGTGACAACAAGAAGAATAGGATAAACCCTAGGCATGTTCTTTTGGCTGTGAGGAACGATGAGGAGCTTGGTAAATTGCTTCAAGGAGTCACCATTGCAAGTGGTGGAGTTCTTCCGAACATCAATCCGGTTCTGCTTCCAAAGAAGACATCATCGAATTCCACTCCTACTGCTGAGAAGGCTCAGAAATCGCCAAAGAAGGCCTAAAATTAACAATAGGTTTCCGAGAATTATTTAAACTTTTTTCTCTTTCCTTTTTGTAAAAATTTAGGGCTCTCTCCTTGAATCCTTAGTTTCTTAGAAAAAACCGATGGTTTTGATCTTCTGGTTTGCGTCTTATGTACGTATCCGTTTCACAATATCTAATGGAAATCTTATCGTTTCTCTAGTTTCTTCGTTTTCTGATTTGCACTCTGCTTAATCTCAGTTTCTCATAATTTGCATCAAAACTCATTAACGAACGCTCTAAATGGAATTTCAATAGATGTTCGATCAACTGCATACGACAACGAAAATGCTCTCCCGGAAATGAATAATAATTTGAAGATGATTTGTAGGAAACCTTGAGGATTGAGTTACGTCTCAGATAATAATGAATTTATATTCG

Coding sequence (CDS)

ATGGAGGTAACTAAGGGCGCCGGAGGAAGAAAAGGATGCGACAGAACTAAGGTCTCCAAGTCCGTCAAGGCCGGACTCCAATTCCCCGTCGGAAGAATCGGACGGTACCTCAAGAAAGGCCGTTACGCAAAGCGCACTGCCGCCGGTGCTCCGATCTACCTGGCTGCTGTCCTCGAATATCTCGCCGCTGAGGTTTTGGAATTGGCTGGGAATGCAGCGCGTGACAACAAGAAGAATAGGATAAACCCTAGGCATGTTCTTTTGGCTGTGAGGAACGATGAGGAGCTTGGTAAATTGCTTCAAGGAGTCACCATTGCAAGTGGTGGAGTTCTTCCGAACATCAATCCGGTTCTGCTTCCAAAGAAGACATCATCGAATTCCACTCCTACTGCTGAGAAGGCTCAGAAATCGCCAAAGAAGGCCTAA

Protein sequence

MEVTKGAGGRKGCDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPKKTSSNSTPTAEKAQKSPKKA

Homology

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BLAST of Clc02G16430 vs. NCBI nr
Match: XP_008454292.1 (PREDICTED: probable histone H2A.5 [Cucumis melo] >KAA0048024.1 putative histone H2A.5 [Cucumis melo var. makuwa] >TYK13795.1 putative histone H2A.5 [Cucumis melo var. makuwa])

HSP 1 Score: 260.4 bits (664), Expect = 9.1e-66
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MEVTKGAGGRKGCDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60
           ME TKGAGGRKG DRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKTSSNSTPTAEKAQKSPKKA 142
           KKT+SNSTPTAEKAQKSPKKA
Sbjct: 121 KKTASNSTPTAEKAQKSPKKA 141

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BLAST of Clc02G16430 vs. NCBI nr
Match: XP_004144786.1 (probable histone H2A.5 [Cucumis sativus] >KGN60951.1 hypothetical protein Csa_021264 [Cucumis sativus])

HSP 1 Score: 258.8 bits (660), Expect = 2.6e-65
Identity = 137/141 (97.16%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MEVTKGAGGRKGCDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60
           ME TKGAGGRKG DRTKVSKSVKAGLQFPVGRIGRYLKKGRYA+RTAAGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAQRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKTSSNSTPTAEKAQKSPKKA 142
           KKT+SNSTPTAEKAQKSPKKA
Sbjct: 121 KKTASNSTPTAEKAQKSPKKA 141

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BLAST of Clc02G16430 vs. NCBI nr
Match: XP_038890710.1 (probable histone H2A.5 [Benincasa hispida])

HSP 1 Score: 258.8 bits (660), Expect = 2.6e-65
Identity = 136/141 (96.45%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MEVTKGAGGRKGCDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60
           ME TKGAGGRKG DRTK+SKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKISKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRH+LLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHLLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKTSSNSTPTAEKAQKSPKKA 142
           KKT+SNSTPTAEKAQKSPKKA
Sbjct: 121 KKTASNSTPTAEKAQKSPKKA 141

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BLAST of Clc02G16430 vs. NCBI nr
Match: XP_022150784.1 (probable histone H2A.5 [Momordica charantia])

HSP 1 Score: 253.1 bits (645), Expect = 1.5e-63
Identity = 137/141 (97.16%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MEVTKGAGGRKGCDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60
           ME TKGAGGRKG DRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKTSSNSTP-TAEKAQKSPKK 141
           KKTSSNSTP TAEKA KSPKK
Sbjct: 121 KKTSSNSTPSTAEKAPKSPKK 141

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BLAST of Clc02G16430 vs. NCBI nr
Match: XP_022946249.1 (histone H2A.1-like [Cucurbita moschata] >XP_022946250.1 histone H2A.1-like [Cucurbita moschata] >XP_023545339.1 histone H2A.1-like [Cucurbita pepo subsp. pepo] >KAG6599229.1 hypothetical protein SDJN03_09007, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030234.1 hypothetical protein SDJN02_08581 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 241.9 bits (616), Expect = 3.3e-60
Identity = 128/141 (90.78%), Postives = 134/141 (95.04%), Query Frame = 0


Query: 1   MEVTKGAGGRKGCDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60
           ME TKGAGGRKG +R+K+SKS KAGLQFPV RIGRYLKKGRYA+RT AGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNI+PVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP 120

Query: 121 KKTSSNSTPTAEKAQKSPKKA 142
           KK+SSNST  AEKAQKSPKKA
Sbjct: 121 KKSSSNSTSPAEKAQKSPKKA 141

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BLAST of Clc02G16430 vs. ExPASy Swiss-Prot
Match: Q94F49 (Probable histone H2A.5 OS=Arabidopsis thaliana OX=3702 GN=At5g27670 PE=1 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 4.1e-53
Identity = 115/140 (82.14%), Postives = 123/140 (87.86%), Query Frame = 0


Query: 4   TKGAGGRKGCDRTK-VSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLA 63
           T+GAGGRKG DR K VSKSVKAGLQFPVGRI RYLKKGRYA R  +GAP+YLAAVLEYLA
Sbjct: 11  TRGAGGRKGGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLEYLA 70

Query: 64  AEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPKK 123
           AEVLELAGNAARDNKKNRINPRH+ LA+RNDEELG+LL GVTIASGGVLPNINPVLLPKK
Sbjct: 71  AEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKK 130

Query: 124 -TSSNSTPTAEKAQKSPKKA 142
            T+S+S      A KSPKKA
Sbjct: 131 STASSSQAEKASATKSPKKA 150

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BLAST of Clc02G16430 vs. ExPASy Swiss-Prot
Match: P25469 (Histone H2A.1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 9.2e-53
Identity = 117/143 (81.82%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 2   EVTKGAGGRKGCDRTK-VSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 61
           + TKGAGGRKG  R K V+KS+KAGLQFPVGRIGRYLKKGRYA+R  +GAPIYLAAVLEY
Sbjct: 5   KTTKGAGGRKGGPRKKSVTKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPIYLAAVLEY 64

Query: 62  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 121
           LAAEVLELAGNAARDNKK+RI PRHVLLAVRNDEELGKLL GVTIASGGVLPNINPVLLP
Sbjct: 65  LAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLAGVTIASGGVLPNINPVLLP 124

Query: 122 KKT--SSNSTPTAEKAQKSPKKA 142
           KK+  +   +P A KA KSPKKA
Sbjct: 125 KKSAVAEEKSPKA-KAGKSPKKA 146

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BLAST of Clc02G16430 vs. ExPASy Swiss-Prot
Match: Q2HU68 (Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.3e-51
Identity = 111/140 (79.29%), Postives = 121/140 (86.43%), Query Frame = 0


Query: 5   KGAGGRKGCDRTK-VSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAA 64
           KGAGGRKG  R K V++S +AGLQFPVGRIGRYLKKGRYA+R   GAP+YLAAVLEYLAA
Sbjct: 9   KGAGGRKGGPRKKSVTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAA 68

Query: 65  EVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPKKT 124
           EVLELAGNAARDNKKNRI PRHVLLAVRNDEELGKLL GVTIA GGVLPNINP+LLPKK 
Sbjct: 69  EVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKKN 128

Query: 125 --SSNSTPTAEKAQKSPKKA 142
             ++ +T +  KA KSPKKA
Sbjct: 129 EKAATTTKSPSKATKSPKKA 148

[Close]

BLAST of Clc02G16430 vs. ExPASy Swiss-Prot
Match: Q2HU65 (Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.9e-51
Identity = 113/145 (77.93%), Postives = 122/145 (84.14%), Query Frame = 0


Query: 5   KGAGGRKGCDRTK--VSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLA 64
           KGAGGRKG    K  V++S++AGLQFPVGRIGRYLKKGRYA+R   GAP+YLAAVLEYLA
Sbjct: 9   KGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLA 68

Query: 65  AEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPKK 124
           AEVLELAGNAARDNKKNRI PRHVLLAVRNDEELGKLL GVTIA GGVLPNINPVLLPKK
Sbjct: 69  AEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 128

Query: 125 TSSNSTPTAE------KAQKSPKKA 142
           T  ++T + E      KA KSPKKA
Sbjct: 129 TERSNTVSKEPKSPKPKAGKSPKKA 153

[Close]

BLAST of Clc02G16430 vs. ExPASy Swiss-Prot
Match: Q1S053 (Probable histone H2A.3 OS=Medicago truncatula OX=3880 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 8.6e-51
Identity = 111/143 (77.62%), Postives = 120/143 (83.92%), Query Frame = 0


Query: 5   KGAGGRKGCDRTK--VSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLA 64
           KGAGGRKG    K  V++S++AGLQFPVGRIGRYLKKGRYA+R   GAP+YLAAVLEYLA
Sbjct: 10  KGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLA 69

Query: 65  AEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPKK 124
           AEVLELAGNAARDNKKNRI PRH+LLAVRNDEELGKLL GVTIA GGVLPNINP+LLPKK
Sbjct: 70  AEVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKK 129

Query: 125 TSSNST----PTAEKAQKSPKKA 142
           T   +T    P   KA KSPKKA
Sbjct: 130 TERANTGGKEPKTTKAGKSPKKA 152

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BLAST of Clc02G16430 vs. ExPASy TrEMBL
Match: A0A5A7TYC1 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00570 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.4e-66
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MEVTKGAGGRKGCDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60
           ME TKGAGGRKG DRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKTSSNSTPTAEKAQKSPKKA 142
           KKT+SNSTPTAEKAQKSPKKA
Sbjct: 121 KKTASNSTPTAEKAQKSPKKA 141

[Close]

BLAST of Clc02G16430 vs. ExPASy TrEMBL
Match: A0A1S3BZ15 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103494731 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.4e-66
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MEVTKGAGGRKGCDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60
           ME TKGAGGRKG DRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKTSSNSTPTAEKAQKSPKKA 142
           KKT+SNSTPTAEKAQKSPKKA
Sbjct: 121 KKTASNSTPTAEKAQKSPKKA 141

[Close]

BLAST of Clc02G16430 vs. ExPASy TrEMBL
Match: A0A0A0LLV9 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_2G030610 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.3e-65
Identity = 137/141 (97.16%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MEVTKGAGGRKGCDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60
           ME TKGAGGRKG DRTKVSKSVKAGLQFPVGRIGRYLKKGRYA+RTAAGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAQRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKTSSNSTPTAEKAQKSPKKA 142
           KKT+SNSTPTAEKAQKSPKKA
Sbjct: 121 KKTASNSTPTAEKAQKSPKKA 141

[Close]

BLAST of Clc02G16430 vs. ExPASy TrEMBL
Match: A0A6J1DB39 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111018847 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 7.0e-64
Identity = 137/141 (97.16%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MEVTKGAGGRKGCDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60
           ME TKGAGGRKG DRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120

Query: 121 KKTSSNSTP-TAEKAQKSPKK 141
           KKTSSNSTP TAEKA KSPKK
Sbjct: 121 KKTSSNSTPSTAEKAPKSPKK 141

[Close]

BLAST of Clc02G16430 vs. ExPASy TrEMBL
Match: A0A6J1G397 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111450390 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.6e-60
Identity = 128/141 (90.78%), Postives = 134/141 (95.04%), Query Frame = 0


Query: 1   MEVTKGAGGRKGCDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEY 60
           ME TKGAGGRKG +R+K+SKS KAGLQFPV RIGRYLKKGRYA+RT AGAPIYLAAVLEY
Sbjct: 1   MEGTKGAGGRKGGNRSKISKSAKAGLQFPVARIGRYLKKGRYAQRTGAGAPIYLAAVLEY 60

Query: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLP 120
           LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNI+PVLLP
Sbjct: 61  LAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNIHPVLLP 120

Query: 121 KKTSSNSTPTAEKAQKSPKKA 142
           KK+SSNST  AEKAQKSPKKA
Sbjct: 121 KKSSSNSTSPAEKAQKSPKKA 141

[Close]

BLAST of Clc02G16430 vs. TAIR 10
Match: AT5G27670.1 (histone H2A 7 )

HSP 1 Score: 208.8 bits (530), Expect = 2.9e-54
Identity = 115/140 (82.14%), Postives = 123/140 (87.86%), Query Frame = 0


Query: 4   TKGAGGRKGCDRTK-VSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLA 63
           T+GAGGRKG DR K VSKSVKAGLQFPVGRI RYLKKGRYA R  +GAP+YLAAVLEYLA
Sbjct: 11  TRGAGGRKGGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLEYLA 70

Query: 64  AEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPKK 123
           AEVLELAGNAARDNKKNRINPRH+ LA+RNDEELG+LL GVTIASGGVLPNINPVLLPKK
Sbjct: 71  AEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKK 130

Query: 124 -TSSNSTPTAEKAQKSPKKA 142
            T+S+S      A KSPKKA
Sbjct: 131 STASSSQAEKASATKSPKKA 150

[Close]

BLAST of Clc02G16430 vs. TAIR 10
Match: AT5G02560.1 (histone H2A 12 )

HSP 1 Score: 196.4 bits (498), Expect = 1.5e-50
Identity = 110/148 (74.32%), Postives = 123/148 (83.11%), Query Frame = 0


Query: 2   EVTKGAGGRK---GCDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVL 61
           +V KGA GR+   G  +  VS+SVK+GLQFPVGRIGRYLKKGRY+KR   GAP+YLAAVL
Sbjct: 6   KVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVYLAAVL 65

Query: 62  EYLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVL 121
           EYLAAEVLELAGNAARDNKKNRI PRHVLLAVRNDEELG LL+GVTIA GGVLPNINP+L
Sbjct: 66  EYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPIL 125

Query: 122 LPKKT----SSNSTP-TAEKAQKSPKKA 142
           LPKK+    S+  TP +  KA KSPKK+
Sbjct: 126 LPKKSEKAASTTKTPKSPSKATKSPKKS 153

[Close]

BLAST of Clc02G16430 vs. TAIR 10
Match: AT5G59870.1 (histone H2A 6 )

HSP 1 Score: 189.1 bits (479), Expect = 2.4e-48
Identity = 106/143 (74.13%), Postives = 120/143 (83.92%), Query Frame = 0


Query: 2   EVTKGAGGRK--GCDRTK-VSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVL 61
           +V K  GGRK  G  +TK VSKS+KAGLQFPVGRI R+LKKGRYA+R   GAP+Y+AAVL
Sbjct: 6   KVKKAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVYMAAVL 65

Query: 62  EYLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVL 121
           EYLAAEVLELAGNAARDNKK+RI PRH+LLA+RNDEELGKLL GVTIA GGVLPNIN VL
Sbjct: 66  EYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVL 125

Query: 122 LPKKTSSNSTPTAEKAQKSPKKA 142
           LPKK+++   P  EKA KSP K+
Sbjct: 126 LPKKSATK--PAEEKATKSPVKS 146

[Close]

BLAST of Clc02G16430 vs. TAIR 10
Match: AT5G02560.2 (histone H2A 12 )

HSP 1 Score: 183.0 bits (463), Expect = 1.7e-46
Identity = 110/172 (63.95%), Postives = 123/172 (71.51%), Query Frame = 0


Query: 2   EVTKGAGGRK---GCDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVL 61
           +V KGA GR+   G  +  VS+SVK+GLQFPVGRIGRYLKKGRY+KR   GAP+YLAAVL
Sbjct: 6   KVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVYLAAVL 65

Query: 62  EYLAAE------------------------VLELAGNAARDNKKNRINPRHVLLAVRNDE 121
           EYLAAE                        VLELAGNAARDNKKNRI PRHVLLAVRNDE
Sbjct: 66  EYLAAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLLAVRNDE 125

Query: 122 ELGKLLQGVTIASGGVLPNINPVLLPKKT----SSNSTP-TAEKAQKSPKKA 142
           ELG LL+GVTIA GGVLPNINP+LLPKK+    S+  TP +  KA KSPKK+
Sbjct: 126 ELGTLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSPSKATKSPKKS 177

[Close]

BLAST of Clc02G16430 vs. TAIR 10
Match: AT1G51060.1 (histone H2A 10 )

HSP 1 Score: 166.8 bits (421), Expect = 1.3e-41
Identity = 88/121 (72.73%), Postives = 102/121 (84.30%), Query Frame = 0


Query: 12  GCDRTKVSKSVKAGLQFPVGRIGRYLKKGRYAKRTAAGAPIYLAAVLEYLAAEVLELAGN 71
           G  +   ++S KAGLQFPVGRI R+LKKG+YA+R  AGAP+YLAAVLEYLAAEVLELAGN
Sbjct: 11  GSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELAGN 70

Query: 72  AARDNKKNRINPRHVLLAVRNDEELGKLLQGVTIASGGVLPNINPVLLPKKTSSNSTPTA 131
           AARDNKK RI PRH+ LAVRNDEEL KLL  VTIA+GGV+PNI+ +LLPKKT + S P+A
Sbjct: 71  AARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGA-SKPSA 130

Query: 132 E 133
           E
Sbjct: 131 E 130

The following BLAST results are available for this feature:

BLAST of Clc02G16430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454292.1	9.1e-66	97.87	PREDICTED: probable histone H2A.5 [Cucumis melo] >KAA0048024.1 putative histone ...	[more]
XP_004144786.1	2.6e-65	97.16	probable histone H2A.5 [Cucumis sativus] >KGN60951.1 hypothetical protein Csa_02...	[more]
XP_038890710.1	2.6e-65	96.45	probable histone H2A.5 [Benincasa hispida]	[more]
XP_022150784.1	1.5e-63	97.16	probable histone H2A.5 [Momordica charantia]	[more]
XP_022946249.1	3.3e-60	90.78	histone H2A.1-like [Cucurbita moschata] >XP_022946250.1 histone H2A.1-like [Cucu...	[more]

BLAST of Clc02G16430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94F49	4.1e-53	82.14	Probable histone H2A.5 OS=Arabidopsis thaliana OX=3702 GN=At5g27670 PE=1 SV=1	[more]
P25469	9.2e-53	81.82	Histone H2A.1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1	[more]
Q2HU68	2.3e-51	79.29	Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 P...	[more]
Q2HU65	3.9e-51	77.93	Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 P...	[more]
Q1S053	8.6e-51	77.62	Probable histone H2A.3 OS=Medicago truncatula OX=3880 PE=3 SV=1	[more]

BLAST of Clc02G16430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TYC1	4.4e-66	97.87	Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00570 PE...	[more]
A0A1S3BZ15	4.4e-66	97.87	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103494731 PE=3 SV=1	[more]
A0A0A0LLV9	1.3e-65	97.16	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_2G030610 PE=3 SV=1	[more]
A0A6J1DB39	7.0e-64	97.16	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111018847 PE=3 SV=1	[more]
A0A6J1G397	1.6e-60	90.78	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111450390 PE=3 SV=1	[more]

BLAST of Clc02G16430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27670.1	2.9e-54	82.14	histone H2A 7	[more]
AT5G02560.1	1.5e-50	74.32	histone H2A 12	[more]
AT5G59870.1	2.4e-48	74.13	histone H2A 6	[more]
AT5G02560.2	1.7e-46	63.95	histone H2A 12	[more]
AT1G51060.1	1.3e-41	72.73	histone H2A 10	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 16..38 score: 62.61 coord: 45..60 score: 73.81 coord: 60..73 score: 89.46 coord: 102..120 score: 76.19 coord: 74..88 score: 70.35
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 5..125 e-value: 6.1E-74 score: 261.6
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 5..122 e-value: 2.84349E-64 score: 189.854
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 4..129 e-value: 1.4E-59 score: 201.6
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 17..122
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 15..91 e-value: 4.5E-12 score: 46.5
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 94..127 e-value: 1.3E-18 score: 66.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..141
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 3..129
None	No IPR available	PANTHER	PTHR23430:SF238	HISTONE H2A	coord: 3..129
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 24..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G16430.1	Clc02G16430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000775	chromosome, centromeric region
cellular_component	GO:0000792	heterochromatin
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity