Clc02G11785 (gene) Watermelon (cordophanus) v2

Overview
NameClc02G11785
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionPhotosystem II reaction center protein L
LocationClcChr02: 22881867 .. 22882271 (+)
RNA-Seq ExpressionClc02G11785
SyntenyClc02G11785
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGTCATTATTTTTTTTCCTTGATTTTCTTTCCCAATTTGCAATGAAAATTTTTCCCAATTTCATATACCTTTTGGCAATCTCAAAACTAAAAATATAATCTCTTTAAAAAAAATTCAACAAAAATGAAGCTATCATGATTTTTTTTTTTCGATAAAACTTATCCTATTTTTACAGTGCGATAGTTGGCTGTTCACGGATTAGCTGTACCTACCGTTTCTTTTTTAGGGTCAATATCAGCAATGCAATTCATCCAACGATAAACCTAATCCGAATTATAGAGCTATGACACAATCAAATCCGAACAAACAAAATGTTGAATTGAATCGTACCAGTCTTTACTGGGGGTTATTACTCATTTTTGTACTTGCTGTTTTATTTTCCAATTATTTCTTCAATTAA

mRNA sequence

ATGTGGGGTCAATATCAGCAATGCAATTCATCCAACGATAAACCTAATCCGAATTATAGAGCTATGACACAATCAAATCCGAACAAACAAAATGTTGAATTGAATCGTACCAGTCTTTACTGGGGGTTATTACTCATTTTTGTACTTGCTGTTTTATTTTCCAATTATTTCTTCAATTAA

Coding sequence (CDS)

ATGTGGGGTCAATATCAGCAATGCAATTCATCCAACGATAAACCTAATCCGAATTATAGAGCTATGACACAATCAAATCCGAACAAACAAAATGTTGAATTGAATCGTACCAGTCTTTACTGGGGGTTATTACTCATTTTTGTACTTGCTGTTTTATTTTCCAATTATTTCTTCAATTAA

Protein sequence

MWGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Homology
[Close]
BLAST of Clc02G11785 vs. NCBI nr
Match: YP_009387574.1 (photosystem II protein L [Hansenia weberbaueriana] >YP_009387659.1 photosystem II protein L [Hansenia forbesii] >YP_009387829.1 photosystem II protein L [Hansenia forrestii] >YP_010116922.1 photosystem II protein L [Haplosphaera himalayensis] >QHS71219.1 photosystem II protein L [Haplosphaera phaea] >QPG23974.1 photosystem II protein L [Hansenia oviformis] >ART32526.1 photosystem II protein L [Hansenia weberbaueriana] >ART32611.1 photosystem II protein L [Hansenia forbesii] >ART32781.1 photosystem II protein L [Hansenia forrestii])

HSP 1 Score: 117.1 bits (292), Expect = 5.2e-23
Identity = 56/58 (96.55%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          WGQYQQC+SSNDKPNPNYRAMTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 8  WGQYQQCSSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 65

[Close]
BLAST of Clc02G11785 vs. NCBI nr
Match: QKD76372.1 (photosystem II protein L [Santalum album] >BBZ90126.1 photosystem II protein L [Santalum boninense])

HSP 1 Score: 116.7 bits (291), Expect = 6.8e-23
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0 

Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          WGQYQQCNSSNDKPNPNYRA TQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 8  WGQYQQCNSSNDKPNPNYRATTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 65

[Close]
BLAST of Clc02G11785 vs. NCBI nr
Match: YP_009920018.1 (photosystem II protein L [Cinnamomum longipetiolatum] >QMQ98907.1 photosystem II protein L [Cinnamomum longipetiolatum])

HSP 1 Score: 114.8 bits (286), Expect = 2.6e-22
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 0 

Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          WGQYQQC+SSNDKPNPNYRA TQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 5  WGQYQQCSSSNDKPNPNYRATTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 62

[Close]
BLAST of Clc02G11785 vs. NCBI nr
Match: YP_009860414.1 (photosystem II protein L [Litsea cubeba] >YP_009919936.1 photosystem II protein L [Cinnamomum kotoense] >YP_009920186.1 photosystem II protein L [Litsea garrettii] >QMQ98738.1 photosystem II protein L [Cinnamomum aromaticum] >QKV10051.1 photosystem II protein L [Litsea cubeba] >QMQ98822.1 photosystem II protein L [Cinnamomum kotoense] >QMQ99071.1 photosystem II protein L [Litsea garrettii])

HSP 1 Score: 114.8 bits (286), Expect = 2.6e-22
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 0 

Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          WGQYQQC+SSNDKPNPNYRA TQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 8  WGQYQQCSSSNDKPNPNYRATTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 65

[Close]
BLAST of Clc02G11785 vs. NCBI nr
Match: WP_222273419.1 (hypothetical protein, partial [Modestobacter marinus])

HSP 1 Score: 114.8 bits (286), Expect = 2.6e-22
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 0 

Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          WGQYQQC+SSNDKPNPNYRA TQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 5  WGQYQQCSSSNDKPNPNYRATTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 62

[Close]
BLAST of Clc02G11785 vs. ExPASy Swiss-Prot
Match: Q7J1C4 (Photosystem II reaction center protein L OS=Acorus calamus OX=4465 GN=psbL PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.3e-13
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0 

Query: 22 MTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          MTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 1  MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]
BLAST of Clc02G11785 vs. ExPASy Swiss-Prot
Match: Q6EYW2 (Photosystem II reaction center protein L OS=Agathis robusta OX=60854 GN=psbL PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.3e-13
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0 

Query: 22 MTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          MTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 1  MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]
BLAST of Clc02G11785 vs. ExPASy Swiss-Prot
Match: A1EA23 (Photosystem II reaction center protein L OS=Agrostis stolonifera OX=63632 GN=psbL PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.3e-13
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0 

Query: 22 MTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          MTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 1  MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]
BLAST of Clc02G11785 vs. ExPASy Swiss-Prot
Match: Q67HN6 (Photosystem II reaction center protein L OS=Ananas comosus OX=4615 GN=psbL PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.3e-13
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0 

Query: 22 MTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          MTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 1  MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]
BLAST of Clc02G11785 vs. ExPASy Swiss-Prot
Match: A4QK33 (Photosystem II reaction center protein L OS=Arabis hirsuta OX=78191 GN=psbL PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.3e-13
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0 

Query: 22 MTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          MTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 1  MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

[Close]
BLAST of Clc02G11785 vs. ExPASy TrEMBL
Match: A0A1Y0B5C9 (Photosystem II reaction center protein L OS=Hansenia forbesii OX=165499 GN=psbL PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.5e-23
Identity = 56/58 (96.55%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          WGQYQQC+SSNDKPNPNYRAMTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 8  WGQYQQCSSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 65

[Close]
BLAST of Clc02G11785 vs. ExPASy TrEMBL
Match: A0A1Y0B539 (Photosystem II reaction center protein L OS=Hansenia weberbaueriana OX=54724 GN=psbL PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.5e-23
Identity = 56/58 (96.55%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          WGQYQQC+SSNDKPNPNYRAMTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 8  WGQYQQCSSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 65

[Close]
BLAST of Clc02G11785 vs. ExPASy TrEMBL
Match: A0A1Y0B5U7 (Photosystem II reaction center protein L OS=Hansenia forrestii OX=1050841 GN=psbL PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.5e-23
Identity = 56/58 (96.55%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          WGQYQQC+SSNDKPNPNYRAMTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 8  WGQYQQCSSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 65

[Close]
BLAST of Clc02G11785 vs. ExPASy TrEMBL
Match: A0A6C0AB03 (Photosystem II reaction center protein L OS=Haplosphaera phaea OX=239646 GN=psbL PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.5e-23
Identity = 56/58 (96.55%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          WGQYQQC+SSNDKPNPNYRAMTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 8  WGQYQQCSSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 65

[Close]
BLAST of Clc02G11785 vs. ExPASy TrEMBL
Match: A0A7S9HVQ3 (Photosystem II protein L OS=Hansenia oviformis OX=1978917 GN=psbL PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.5e-23
Identity = 56/58 (96.55%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 2  WGQYQQCNSSNDKPNPNYRAMTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          WGQYQQC+SSNDKPNPNYRAMTQSNPN+QNVELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 8  WGQYQQCSSSNDKPNPNYRAMTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 65

[Close]
BLAST of Clc02G11785 vs. TAIR 10
Match: ATCG00560.1 (photosystem II reaction center protein L )

HSP 1 Score: 73.6 bits (179), Expect = 6.1e-14
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 0 

Query: 22 MTQSNPNKQNVELNRTSLYWGLLLIFVLAVLFSNYFFN 60
          MTQSNPN+Q+VELNRTSLYWGLLLIFVLAVLFSNYFFN
Sbjct: 1  MTQSNPNEQSVELNRTSLYWGLLLIFVLAVLFSNYFFN 38

The following BLAST results are available for this feature:
BLAST of Clc02G11785 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009387574.15.2e-2396.55photosystem II protein L [Hansenia weberbaueriana] >YP_009387659.1 photosystem I... [more]
QKD76372.16.8e-2396.55photosystem II protein L [Santalum album] >BBZ90126.1 photosystem II protein L [... [more]
YP_009920018.12.6e-2294.83photosystem II protein L [Cinnamomum longipetiolatum] >QMQ98907.1 photosystem II... [more]
YP_009860414.12.6e-2294.83photosystem II protein L [Litsea cubeba] >YP_009919936.1 photosystem II protein ... [more]
WP_222273419.12.6e-2294.83hypothetical protein, partial [Modestobacter marinus][more]
BLAST of Clc02G11785 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q7J1C42.3e-1397.37Photosystem II reaction center protein L OS=Acorus calamus OX=4465 GN=psbL PE=2 ... [more]
Q6EYW22.3e-1397.37Photosystem II reaction center protein L OS=Agathis robusta OX=60854 GN=psbL PE=... [more]
A1EA232.3e-1397.37Photosystem II reaction center protein L OS=Agrostis stolonifera OX=63632 GN=psb... [more]
Q67HN62.3e-1397.37Photosystem II reaction center protein L OS=Ananas comosus OX=4615 GN=psbL PE=3 ... [more]
A4QK332.3e-1397.37Photosystem II reaction center protein L OS=Arabis hirsuta OX=78191 GN=psbL PE=3... [more]
BLAST of Clc02G11785 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1Y0B5C92.5e-2396.55Photosystem II reaction center protein L OS=Hansenia forbesii OX=165499 GN=psbL ... [more]
A0A1Y0B5392.5e-2396.55Photosystem II reaction center protein L OS=Hansenia weberbaueriana OX=54724 GN=... [more]
A0A1Y0B5U72.5e-2396.55Photosystem II reaction center protein L OS=Hansenia forrestii OX=1050841 GN=psb... [more]
A0A6C0AB032.5e-2396.55Photosystem II reaction center protein L OS=Haplosphaera phaea OX=239646 GN=psbL... [more]
A0A7S9HVQ32.5e-2396.55Photosystem II protein L OS=Hansenia oviformis OX=1978917 GN=psbL PE=4 SV=1[more]
BLAST of Clc02G11785 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00560.16.1e-1494.74photosystem II reaction center protein L [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003372Photosystem II PsbLPFAMPF02419PsbLcoord: 24..59
e-value: 9.8E-24
score: 83.1
IPR003372Photosystem II PsbLHAMAPMF_01317PSII_PsbLcoord: 14..59
score: 16.268564
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
IPR037266Photosystem II PsbL superfamilySUPERFAMILY161017Photosystem II reaction center protein L, PsbLcoord: 23..59

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc02G11785.1Clc02G11785.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
biological_process GO:0009767 photosynthetic electron transport chain
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009539 photosystem II reaction center
cellular_component GO:0016020 membrane
cellular_component GO:0009523 photosystem II
molecular_function GO:0020037 heme binding
molecular_function GO:0046872 metal ion binding