Clc02G11350 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G11350
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Mitochondrial transcription termination factor family protein
Location	ClcChr02: 20622681 .. 20623557 (+)
RNA-Seq Expression	Clc02G11350
Synteny	Clc02G11350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTAAGCGCCAGTCAACATGGTACCACTATCCTGTGGTTCTTCAGGAGTAATGGGTTCGAGGAAAAAGGCATCCACGAAATGTTCACAAAGTGCAAACGGTTTGAAGGTACGCATAAAGAAATTGCCTCTGAAAACTGGGATTACTTGCAAAATATTGGAATTCAAGAGAGAAAGCTCCGTTACATGGTTTCCAAGTACCCCAAAATTCTTACCATTTGTCTGAATGGGAAGCTTGTTCCCATGGTCGAGTGCCTTGCAACTCTGGGTACTAAGCCCTTTGATGTTGCTTCGGCCATTTCCAAATTTCCTTGCATGCTTTTTCATATCATGGAAGAGAAGCTTTGCCCACTTTTGGCTTTTTTTTCAGGCATTGGATATCCCTGAGAAGCAGCCTGGGAAGACGATTTTGCTTAATCCCAGGCTTATTAGCTACAGCATTGTGCCGAAACTTTCTGAGATTGTGGACTTTCTTGCTAGTTTTGGCCTTGATAAGGAAGGGATGATTGGCAAAGTTTTGGTAAAATATCCATTTCTTATGGGGTATAGTGTCGATAAAAGGCAACGTCCTACATTAGAGTTTCTGAAATCTATGGGTTTGAAGGATGTTGATGTTCAAGCAGTTGCAGTTGGCTACCCTGAGGTTTTATGTAGGGATGCTAACAAAGTTTTGAGACCAATTTTGATTACCTGAAGAACTGTGGTTTTCAAGATGCGCAGATAGTAGCTATGGTGGCTGGTTATCCTCCTGTTTAAGCATTCTATAGAACCAGGGATCAATTTCTTGATAGAAGTTATGGGGAGAAGAATTGACGAAGTTGCTGGTTATCCGGACTTCTTTCGACATGGTTTAAAGAAGAGGCTGGAGTTATGA

mRNA sequence

ATGGATTTAAGCGCCAGTCAACATGGTACCACTATCCTGTGGTTCTTCAGGAGTAATGGGTTCGAGGAAAAAGGCATCCACGAAATGTTCACAAAGTGCAAACGGTTTGAAGGTACGCATAAAGAAATTGCCTCTGAAAACTGGGATTACTTGCAAAATATTGGAATTCAAGAGAGAAAGCTCCGTTACATGGTTTCCAAGTACCCCAAAATTCTTACCATTTGTCTGAATGGGAAGCTTGTTCCCATGGTCGAGTGCCTTGCAACTCTGGGTACTAAGCCCTTTGATGCATTGGATATCCCTGAGAAGCAGCCTGGGAAGACGATTTTGCTTAATCCCAGGCTTATTAGCTACAGCATTGTGCCGAAACTTTCTGAGATTGTGGACTTTCTTGCTAGTTTTGGCCTTGATAAGGAAGGGATGATTGGCAAAGTTTTGGTAAAATATCCATTTCTTATGGGGTATAGTGTCGATAAAAGGCAACGTCCTACATTAGAGTTTCTGAAATCTATGGGTTTGAAGGATGTTGATGTTCAAGCAGTTGCAGTTGGCTACCCTGAGCATTCTATAGAACCAGGGATCAATTTCTTGATAGAAGTTATGGGGAGAAGAATTGACGAAGTTGCTGGTTATCCGGACTTCTTTCGACATGGTTTAAAGAAGAGGCTGGAGTTATGA

Coding sequence (CDS)

ATGGATTTAAGCGCCAGTCAACATGGTACCACTATCCTGTGGTTCTTCAGGAGTAATGGGTTCGAGGAAAAAGGCATCCACGAAATGTTCACAAAGTGCAAACGGTTTGAAGGTACGCATAAAGAAATTGCCTCTGAAAACTGGGATTACTTGCAAAATATTGGAATTCAAGAGAGAAAGCTCCGTTACATGGTTTCCAAGTACCCCAAAATTCTTACCATTTGTCTGAATGGGAAGCTTGTTCCCATGGTCGAGTGCCTTGCAACTCTGGGTACTAAGCCCTTTGATGCATTGGATATCCCTGAGAAGCAGCCTGGGAAGACGATTTTGCTTAATCCCAGGCTTATTAGCTACAGCATTGTGCCGAAACTTTCTGAGATTGTGGACTTTCTTGCTAGTTTTGGCCTTGATAAGGAAGGGATGATTGGCAAAGTTTTGGTAAAATATCCATTTCTTATGGGGTATAGTGTCGATAAAAGGCAACGTCCTACATTAGAGTTTCTGAAATCTATGGGTTTGAAGGATGTTGATGTTCAAGCAGTTGCAGTTGGCTACCCTGAGCATTCTATAGAACCAGGGATCAATTTCTTGATAGAAGTTATGGGGAGAAGAATTGACGAAGTTGCTGGTTATCCGGACTTCTTTCGACATGGTTTAAAGAAGAGGCTGGAGTTATGA

Protein sequence

MDLSASQHGTTILWFFRSNGFEEKGIHEMFTKCKRFEGTHKEIASENWDYLQNIGIQERKLRYMVSKYPKILTICLNGKLVPMVECLATLGTKPFDALDIPEKQPGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYSVDKRQRPTLEFLKSMGLKDVDVQAVAVGYPEHSIEPGINFLIEVMGRRIDEVAGYPDFFRHGLKKRLEL

Homology

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BLAST of Clc02G11350 vs. NCBI nr
Match: XP_021301114.1 (transcription termination factor MTERF6, chloroplastic/mitochondrial [Herrania umbratica])

HSP 1 Score: 298.5 bits (763), Expect = 4.8e-77
Identity = 161/296 (54.39%), Postives = 191/296 (64.53%), Query Frame = 0


Query: 1   MDLSASQHGTTILWFFRSNGFEEKGIHEMFTKCKRFEGTHKEIASENWDYLQNIGIQERK 60
           M++++SQ+G++I+WFFR  GF++K I+EMF KCKR +G  KE ASENW YL++IGIQERK
Sbjct: 1   MEVASSQNGSSIMWFFRDKGFDDKSINEMFRKCKRLQGVQKETASENWAYLKSIGIQERK 60

Query: 61  LRYMVSKYPKILTICLNGKLVPMVECLATLGTKP-------------------------- 120
           L  +VS+ PKILT+ LN KLVPMVECLATLGTK                           
Sbjct: 61  LPSVVSRCPKILTLGLNEKLVPMVECLATLGTKRHEVAYAIARFPHIISHSVEEKLCPLL 120

Query: 121 --FDALDIPEKQPGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFL 180
             F AL +PEKQ GK ILLNPRLISYSI  KL+EIVDFLAS GL +EGMIGKVL KYPF+
Sbjct: 121 AFFQALGVPEKQLGKMILLNPRLISYSIESKLTEIVDFLASLGLTREGMIGKVLSKYPFI 180

Query: 181 MGYSVDKRQRPTLEFLKSMGLKDVDVQAVAVGYPE------------------------- 226
           MGYSVDKR RPT EFLKS+GL   D+Q VA+ +PE                         
Sbjct: 181 MGYSVDKRLRPTSEFLKSVGLSGTDLQTVAMNFPEVLCRDVSKILRPNFAYLERCGFGDR 240

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BLAST of Clc02G11350 vs. NCBI nr
Match: EOX98953.1 (Mitochondrial transcription termination factor family protein [Theobroma cacao])

HSP 1 Score: 297.7 bits (761), Expect = 8.2e-77
Identity = 160/296 (54.05%), Postives = 192/296 (64.86%), Query Frame = 0


Query: 1   MDLSASQHGTTILWFFRSNGFEEKGIHEMFTKCKRFEGTHKEIASENWDYLQNIGIQERK 60
           M++++SQ+G++I+WFFR  GF++K I+EMF KCKR +G  KE ASENW YL++IGIQERK
Sbjct: 1   MEVASSQNGSSIMWFFRDKGFDDKSINEMFRKCKRLQGVQKERASENWAYLKSIGIQERK 60

Query: 61  LRYMVSKYPKILTICLNGKLVPMVECLATLGTKP-------------------------- 120
           L  +VS+ PKILT+ LN KLVPMVECLATLGTK                           
Sbjct: 61  LPSVVSRCPKILTLGLNEKLVPMVECLATLGTKRHEVASAIARFPHIISHSVEEKLCPLL 120

Query: 121 --FDALDIPEKQPGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFL 180
             F AL +PEKQ GK ILLNPRLISYSI  KL+EIVDFLA+ GL +EGMIGKVL KYPF+
Sbjct: 121 AFFQALGVPEKQLGKMILLNPRLISYSIESKLTEIVDFLATLGLTREGMIGKVLSKYPFI 180

Query: 181 MGYSVDKRQRPTLEFLKSMGLKDVDVQAVAVGYPE------------------------- 226
           MGYSVDKR RPT EFLKS+GL + D+Q VA+ +PE                         
Sbjct: 181 MGYSVDKRLRPTSEFLKSVGLSETDLQTVAMNFPEVLCRDVRKILRPNFAYLERCGFGDR 240

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BLAST of Clc02G11350 vs. NCBI nr
Match: OMO72115.1 (Mitochodrial transcription termination factor-related protein [Corchorus capsularis])

HSP 1 Score: 297.4 bits (760), Expect = 1.1e-76
Identity = 160/296 (54.05%), Postives = 190/296 (64.19%), Query Frame = 0


Query: 1   MDLSASQHGTTILWFFRSNGFEEKGIHEMFTKCKRFEGTHKEIASENWDYLQNIGIQERK 60
           M+ ++SQ+G++I+WFFR  GF++K I+EMF KCKR EG  KE ASENW YL++IGIQERK
Sbjct: 1   MEAASSQNGSSIMWFFRDKGFDDKSINEMFKKCKRLEGAQKERASENWSYLKSIGIQERK 60

Query: 61  LRYMVSKYPKILTICLNGKLVPMVECLATLGTKP-------------------------- 120
           L  +VS+ PKILT  LN KLVPMVECLATLGTK                           
Sbjct: 61  LPSVVSRCPKILTFGLNEKLVPMVECLATLGTKRREVASAIVRFPHIMSHSVEEKLCPLL 120

Query: 121 --FDALDIPEKQPGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFL 180
             F AL +PEKQ GK ILLNPRLISYSI  KL+EIVDFLA+ GL +EGMIGKVL +YPF+
Sbjct: 121 AFFQALGVPEKQLGKMILLNPRLISYSIDSKLTEIVDFLATLGLAREGMIGKVLARYPFI 180

Query: 181 MGYSVDKRQRPTLEFLKSMGLKDVDVQAVAVGYPE------------------------- 226
           MGYSVDKR RPT EFLKS+GL + D+Q VA+ +PE                         
Sbjct: 181 MGYSVDKRLRPTSEFLKSVGLSETDLQTVAMNFPEVLCRDVNKILKPNFAYLQQCGFGDR 240

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BLAST of Clc02G11350 vs. NCBI nr
Match: XP_007043122.2 (PREDICTED: transcription termination factor MTERF6, chloroplastic/mitochondrial [Theobroma cacao])

HSP 1 Score: 296.6 bits (758), Expect = 1.8e-76
Identity = 159/296 (53.72%), Postives = 192/296 (64.86%), Query Frame = 0


Query: 1   MDLSASQHGTTILWFFRSNGFEEKGIHEMFTKCKRFEGTHKEIASENWDYLQNIGIQERK 60
           M++++SQ+G++I+WFFR  GF++K I+EMF KCKR +G  KE ASENW YL++IGIQERK
Sbjct: 1   MEVASSQNGSSIMWFFRDKGFDDKSINEMFRKCKRLQGVQKERASENWAYLKSIGIQERK 60

Query: 61  LRYMVSKYPKILTICLNGKLVPMVECLATLGTKP-------------------------- 120
           L  +VS+ PKILT+ LN KLVPMVECLATLGTK                           
Sbjct: 61  LPSVVSRCPKILTLGLNEKLVPMVECLATLGTKRHEVASAIARFPHIISHSVEEKLCPLL 120

Query: 121 --FDALDIPEKQPGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFL 180
             F AL +PEKQ GK ILLNPRLISYSI  KL+EIVDFLA+ GL +EGMIGKVL KYPF+
Sbjct: 121 AFFQALGVPEKQLGKMILLNPRLISYSIESKLTEIVDFLATLGLTREGMIGKVLSKYPFI 180

Query: 181 MGYSVDKRQRPTLEFLKSMGLKDVDVQAVAVGYPE------------------------- 226
           MGYSVDKR RPT EFLKS+GL + D+Q +A+ +PE                         
Sbjct: 181 MGYSVDKRLRPTSEFLKSVGLSETDLQTLAMNFPEVLCRDVRKILRPNFAYLERCGFGDR 240

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BLAST of Clc02G11350 vs. NCBI nr
Match: OMP10113.1 (Mitochodrial transcription termination factor-related protein [Corchorus olitorius])

HSP 1 Score: 296.2 bits (757), Expect = 2.4e-76
Identity = 159/296 (53.72%), Postives = 190/296 (64.19%), Query Frame = 0


Query: 1   MDLSASQHGTTILWFFRSNGFEEKGIHEMFTKCKRFEGTHKEIASENWDYLQNIGIQERK 60
           M+ ++SQ+G++I+WFFR  GF++K I+EMF KCKR +G  KE ASENW YL++IGIQERK
Sbjct: 1   MEAASSQNGSSIMWFFRDKGFDDKSINEMFKKCKRLQGAQKERASENWSYLKSIGIQERK 60

Query: 61  LRYMVSKYPKILTICLNGKLVPMVECLATLGTKP-------------------------- 120
           L  +VS+ PKILT  LN KLVPMVECLATLGTK                           
Sbjct: 61  LPSVVSRCPKILTFGLNEKLVPMVECLATLGTKRHEVASAIVRFPHIISHSVEEKLCPLL 120

Query: 121 --FDALDIPEKQPGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFL 180
             F AL +PEKQ GK ILLNPRLISYSI  KL+EIVDFLA+ GL +EGMIGKVL +YPF+
Sbjct: 121 AFFQALGVPEKQLGKMILLNPRLISYSIDSKLTEIVDFLATLGLAREGMIGKVLARYPFI 180

Query: 181 MGYSVDKRQRPTLEFLKSMGLKDVDVQAVAVGYPE------------------------- 226
           MGYSVDKR RPT EFLKS+GL + D+Q VA+ +PE                         
Sbjct: 181 MGYSVDKRLRPTSEFLKSVGLSETDLQTVAMNFPEVLCRDVNKILKPNFAYLQQCGFGDR 240

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BLAST of Clc02G11350 vs. ExPASy Swiss-Prot
Match: Q9SZL6 (Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTERF6 PE=2 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.8e-63
Identity = 135/288 (46.88%), Postives = 168/288 (58.33%), Query Frame = 0


Query: 10  TTILWFFRSNGFEEKGIHEMFTKCKRFEGTHKEIASENWDYLQNI-GIQERKLRYMVSKY 69
           ++I+WFFR  GF++  I +M  KCK+ E    ++ASENWDYL NI GIQERKL Y+VS+ 
Sbjct: 7   SSIMWFFRDKGFDDPSIDKMLRKCKQLEKAQSDVASENWDYLSNIVGIQERKLPYIVSRC 66

Query: 70  PKILTICLNGKLVPMVECLATLGTKP----------------------------FDALDI 129
           PKILT+ L+ +L+PMVECL++LG  P                            F AL +
Sbjct: 67  PKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQALGV 126

Query: 130 PEKQPGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYSVDKR 189
           PE Q GK IL NPRLISYSI  KL+ IV FLAS GLD++GMIGKVLVK PFLMGYSVDKR
Sbjct: 127 PETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVDKR 186

Query: 190 QRPTLEFLKS-------------------------------------MGLKDVDVQAVAV 225
            RPT EFLKS                                      G  D  +  +  
Sbjct: 187 LRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATMVT 246

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BLAST of Clc02G11350 vs. ExPASy Swiss-Prot
Match: F4JVI3 (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF5 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.6e-12
Identity = 53/167 (31.74%), Postives = 89/167 (53.29%), Query Frame = 0


Query: 49  DYLQNIGIQERKLRYMVSKYPKILTICLNGKLVPMVECLATLGTKPFDALDIPEKQPGKT 108
           ++L ++GI +  +  ++ K P+I  I L   L P +  L TLG        I + Q  K 
Sbjct: 237 EFLLDLGIPKSDIPTILCKRPQICGISLTDNLKPTMAFLETLG--------IDKNQWAKI 296

Query: 109 ILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYSVDKRQRPTLEFL 168
           I   P +++YS   KL+  V+FL+  GL +E  IG++L + P +M YSV+ + RPT+E+ 
Sbjct: 297 ISRFPAILTYS-RQKLTSTVEFLSQTGLTEE-QIGRILTRCPNIMSYSVEDKLRPTMEYF 356

Query: 169 KSMGLKDVDVQAVAVGYP-------EHSIEPGINFLIEVMGRRIDEV 209
           +S+   +VDV  +    P       E +++P   F +E  G  +DE+
Sbjct: 357 RSL---NVDVAVLLHRCPQTFGLSIESNLKPVTEFFLE-KGFGLDEI 389

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BLAST of Clc02G11350 vs. ExPASy Swiss-Prot
Match: Q6AUK6 (Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0404000 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-10
Identity = 45/185 (24.32%), Postives = 89/185 (48.11%), Query Frame = 0


Query: 49  DYLQNIGIQERKLRYMVSKYPKILTICLNGKLVPMVECLATLGTKPFDALDIPEKQPGKT 108
           DYL  +G+++  L  ++ +YP++L   +   L P+V+ L  +  +P D   + E+     
Sbjct: 149 DYLGKLGVRQDALPDLLRRYPQVLHASVVVDLAPVVKYLQGMDVRPHDVPRVLERY---- 208

Query: 109 ILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYSVDKRQRPTLEFL 168
               P L+ + +   +S  + +L   G+ +   +G V+ ++P ++G  V K  +P +E L
Sbjct: 209 ----PELLGFKLEGTMSTSIAYLVGIGVARR-QVGSVITRFPEVLGMRVGKIIKPFVEHL 268

Query: 169 KSMGLKDVDVQAVAVGYP-------EHSIEPGINFLIEVMGRR---IDEVAGYPDFFRHG 224
           + +GL+ + +  +    P       E  ++P I  L+E   R+      VA YPD     
Sbjct: 269 EGIGLQRLAIARIIEKKPYVLGFGLEDKVKPNIEALLEFGVRKEALAFIVAQYPDILGIE 324

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BLAST of Clc02G11350 vs. ExPASy Swiss-Prot
Match: Q9FM80 (Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF9 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-09
Identity = 50/224 (22.32%), Postives = 89/224 (39.73%), Query Frame = 0


Query: 44  ASENWDYLQNIGIQERKLRYMVSKYPKILTICLNGKLVPMVECLATLGTKPFDALDIPEK 103
           A E  DYL ++G++ R ++ M+ + P+IL   +   L   +  L  LG        IP  
Sbjct: 219 AQERLDYLLSVGVKHRDIKRMLLRQPQILQYTVENNLKAHISFLMGLG--------IPNS 278

Query: 104 QPGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKV------------------ 163
           + G+ +   P L SYS+   L   + +L      KE  +GKV                  
Sbjct: 279 KIGQIVAATPSLFSYSVENSLRPTIRYLIEEVGIKETDVGKVVQLSPQILVQRLDITWNT 338

Query: 164 -------------------LVKYPFLMGYSVDKRQRPTLEFLKSMGLKDVDVQAVAVGYP 223
                              + K+P L+ YS+D    P + FL+S+G+ + D+  V     
Sbjct: 339 RYMFLSKELGAPRDSVVKMVKKHPQLLHYSIDDGFLPRINFLRSIGMCNSDILKVLTSLT 398

[Close]

BLAST of Clc02G11350 vs. ExPASy Swiss-Prot
Match: F4IHL3 (Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF2 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-09
Identity = 41/180 (22.78%), Postives = 83/180 (46.11%), Query Frame = 0


Query: 50  YLQNIGIQERKLRYMVSKYPKILTICLNGKLVPMVECLATLGTKPFDALDIPEKQPGKTI 109
           Y   +GI +  ++ ++   P +  I L   + P V  L  +G        IP +  G  +
Sbjct: 394 YFYYLGIPKEGMKRILVVKPILYCIDLEKTIAPKVRFLQEMG--------IPNEAIGNML 453

Query: 110 LLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYSVDKRQRPTLEFLK 169
           +  P L++ S+  K+  +V FL +     +  IGKV+   P L+G S+  +  P + +  
Sbjct: 454 VKFPSLLTNSLYKKIRPVVIFLLTRAGVTQKDIGKVIAMDPALLGCSIGTKLEPNMRYYI 513

Query: 170 SMGLKDVDVQAVAVGYP------EHSIEPGINFLIEVMGRRIDEVAGYPDFFRHGLKKRL 224
           S+G++   +  +   +P        ++ P   +L   M R + ++  +P FF + L++R+
Sbjct: 514 SLGIRFYQLGEMIADFPMLLRYNVDNLRPKYRYLRRTMIRPLQDLIEFPRFFSYSLERRI 565

[Close]

BLAST of Clc02G11350 vs. ExPASy TrEMBL
Match: A0A6J1BSC3 (transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Herrania umbratica OX=108875 GN=LOC110429412 PE=3 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 2.3e-77
Identity = 161/296 (54.39%), Postives = 191/296 (64.53%), Query Frame = 0


Query: 1   MDLSASQHGTTILWFFRSNGFEEKGIHEMFTKCKRFEGTHKEIASENWDYLQNIGIQERK 60
           M++++SQ+G++I+WFFR  GF++K I+EMF KCKR +G  KE ASENW YL++IGIQERK
Sbjct: 1   MEVASSQNGSSIMWFFRDKGFDDKSINEMFRKCKRLQGVQKETASENWAYLKSIGIQERK 60

Query: 61  LRYMVSKYPKILTICLNGKLVPMVECLATLGTKP-------------------------- 120
           L  +VS+ PKILT+ LN KLVPMVECLATLGTK                           
Sbjct: 61  LPSVVSRCPKILTLGLNEKLVPMVECLATLGTKRHEVAYAIARFPHIISHSVEEKLCPLL 120

Query: 121 --FDALDIPEKQPGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFL 180
             F AL +PEKQ GK ILLNPRLISYSI  KL+EIVDFLAS GL +EGMIGKVL KYPF+
Sbjct: 121 AFFQALGVPEKQLGKMILLNPRLISYSIESKLTEIVDFLASLGLTREGMIGKVLSKYPFI 180

Query: 181 MGYSVDKRQRPTLEFLKSMGLKDVDVQAVAVGYPE------------------------- 226
           MGYSVDKR RPT EFLKS+GL   D+Q VA+ +PE                         
Sbjct: 181 MGYSVDKRLRPTSEFLKSVGLSGTDLQTVAMNFPEVLCRDVSKILRPNFAYLERCGFGDR 240

[Close]

BLAST of Clc02G11350 vs. ExPASy TrEMBL
Match: A0A5B6Z9F0 (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_009937 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 3.0e-77
Identity = 160/292 (54.79%), Postives = 186/292 (63.70%), Query Frame = 0


Query: 5   ASQHGTTILWFFRSNGFEEKGIHEMFTKCKRFEGTHKEIASENWDYLQNIGIQERKLRYM 64
           ++ H  +++WFF+  GF++K I EMF KCKR EG  KE ASENW YL +IGIQERK+  +
Sbjct: 4   SNSHNASLMWFFKDRGFDDKNIREMFKKCKRLEGVQKERASENWTYLTSIGIQERKIPSL 63

Query: 65  VSKYPKILTICLNGKLVPMVECLATLGTKP----------------------------FD 124
           VSK PKILTI LN KLVPMV+CLATLGTKP                            F 
Sbjct: 64  VSKCPKILTIGLNEKLVPMVQCLATLGTKPSEVASAITKFPQILSHSVEEKLCPLLAFFQ 123

Query: 125 ALDIPEKQPGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYS 184
           AL +PEKQ GK +LLNPR+ISYSI  KLS+IVDFLAS GL KEGMIGKVLVKYPF+MGYS
Sbjct: 124 ALGVPEKQLGKMLLLNPRIISYSIESKLSKIVDFLASLGLTKEGMIGKVLVKYPFIMGYS 183

Query: 185 VDKRQRPTLEFLKSMGLKDVDVQAVAVGYPE----------------------------- 226
           VDKR  PTLEFLKS+GL ++D+Q VA+ +PE                             
Sbjct: 184 VDKRLCPTLEFLKSVGLTELDLQRVAISFPEVLCRDANKILRHNFTYLKGHGFKDGQIAA 243

[Close]

BLAST of Clc02G11350 vs. ExPASy TrEMBL
Match: A0A061E9I9 (Mitochondrial transcription termination factor family protein OS=Theobroma cacao OX=3641 GN=TCM_007613 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 4.0e-77
Identity = 160/296 (54.05%), Postives = 192/296 (64.86%), Query Frame = 0


Query: 1   MDLSASQHGTTILWFFRSNGFEEKGIHEMFTKCKRFEGTHKEIASENWDYLQNIGIQERK 60
           M++++SQ+G++I+WFFR  GF++K I+EMF KCKR +G  KE ASENW YL++IGIQERK
Sbjct: 1   MEVASSQNGSSIMWFFRDKGFDDKSINEMFRKCKRLQGVQKERASENWAYLKSIGIQERK 60

Query: 61  LRYMVSKYPKILTICLNGKLVPMVECLATLGTKP-------------------------- 120
           L  +VS+ PKILT+ LN KLVPMVECLATLGTK                           
Sbjct: 61  LPSVVSRCPKILTLGLNEKLVPMVECLATLGTKRHEVASAIARFPHIISHSVEEKLCPLL 120

Query: 121 --FDALDIPEKQPGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFL 180
             F AL +PEKQ GK ILLNPRLISYSI  KL+EIVDFLA+ GL +EGMIGKVL KYPF+
Sbjct: 121 AFFQALGVPEKQLGKMILLNPRLISYSIESKLTEIVDFLATLGLTREGMIGKVLSKYPFI 180

Query: 181 MGYSVDKRQRPTLEFLKSMGLKDVDVQAVAVGYPE------------------------- 226
           MGYSVDKR RPT EFLKS+GL + D+Q VA+ +PE                         
Sbjct: 181 MGYSVDKRLRPTSEFLKSVGLSETDLQTVAMNFPEVLCRDVRKILRPNFAYLERCGFGDR 240

[Close]

BLAST of Clc02G11350 vs. ExPASy TrEMBL
Match: A0A1R3HP25 (Mitochodrial transcription termination factor-related protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_17938 PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 5.2e-77
Identity = 160/296 (54.05%), Postives = 190/296 (64.19%), Query Frame = 0


Query: 1   MDLSASQHGTTILWFFRSNGFEEKGIHEMFTKCKRFEGTHKEIASENWDYLQNIGIQERK 60
           M+ ++SQ+G++I+WFFR  GF++K I+EMF KCKR EG  KE ASENW YL++IGIQERK
Sbjct: 1   MEAASSQNGSSIMWFFRDKGFDDKSINEMFKKCKRLEGAQKERASENWSYLKSIGIQERK 60

Query: 61  LRYMVSKYPKILTICLNGKLVPMVECLATLGTKP-------------------------- 120
           L  +VS+ PKILT  LN KLVPMVECLATLGTK                           
Sbjct: 61  LPSVVSRCPKILTFGLNEKLVPMVECLATLGTKRREVASAIVRFPHIMSHSVEEKLCPLL 120

Query: 121 --FDALDIPEKQPGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFL 180
             F AL +PEKQ GK ILLNPRLISYSI  KL+EIVDFLA+ GL +EGMIGKVL +YPF+
Sbjct: 121 AFFQALGVPEKQLGKMILLNPRLISYSIDSKLTEIVDFLATLGLAREGMIGKVLARYPFI 180

Query: 181 MGYSVDKRQRPTLEFLKSMGLKDVDVQAVAVGYPE------------------------- 226
           MGYSVDKR RPT EFLKS+GL + D+Q VA+ +PE                         
Sbjct: 181 MGYSVDKRLRPTSEFLKSVGLSETDLQTVAMNFPEVLCRDVNKILKPNFAYLQQCGFGDR 240

[Close]

BLAST of Clc02G11350 vs. ExPASy TrEMBL
Match: A0A1R3KSP4 (Mitochodrial transcription termination factor-related protein OS=Corchorus olitorius OX=93759 GN=COLO4_04808 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 1.2e-76
Identity = 159/296 (53.72%), Postives = 190/296 (64.19%), Query Frame = 0


Query: 1   MDLSASQHGTTILWFFRSNGFEEKGIHEMFTKCKRFEGTHKEIASENWDYLQNIGIQERK 60
           M+ ++SQ+G++I+WFFR  GF++K I+EMF KCKR +G  KE ASENW YL++IGIQERK
Sbjct: 1   MEAASSQNGSSIMWFFRDKGFDDKSINEMFKKCKRLQGAQKERASENWSYLKSIGIQERK 60

Query: 61  LRYMVSKYPKILTICLNGKLVPMVECLATLGTKP-------------------------- 120
           L  +VS+ PKILT  LN KLVPMVECLATLGTK                           
Sbjct: 61  LPSVVSRCPKILTFGLNEKLVPMVECLATLGTKRHEVASAIVRFPHIISHSVEEKLCPLL 120

Query: 121 --FDALDIPEKQPGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFL 180
             F AL +PEKQ GK ILLNPRLISYSI  KL+EIVDFLA+ GL +EGMIGKVL +YPF+
Sbjct: 121 AFFQALGVPEKQLGKMILLNPRLISYSIDSKLTEIVDFLATLGLAREGMIGKVLARYPFI 180

Query: 181 MGYSVDKRQRPTLEFLKSMGLKDVDVQAVAVGYPE------------------------- 226
           MGYSVDKR RPT EFLKS+GL + D+Q VA+ +PE                         
Sbjct: 181 MGYSVDKRLRPTSEFLKSVGLSETDLQTVAMNFPEVLCRDVNKILKPNFAYLQQCGFGDR 240

[Close]

BLAST of Clc02G11350 vs. TAIR 10
Match: AT4G38160.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 243.8 bits (621), Expect = 1.3e-64
Identity = 135/288 (46.88%), Postives = 168/288 (58.33%), Query Frame = 0


Query: 10  TTILWFFRSNGFEEKGIHEMFTKCKRFEGTHKEIASENWDYLQNI-GIQERKLRYMVSKY 69
           ++I+WFFR  GF++  I +M  KCK+ E    ++ASENWDYL NI GIQERKL Y+VS+ 
Sbjct: 7   SSIMWFFRDKGFDDPSIDKMLRKCKQLEKAQSDVASENWDYLSNIVGIQERKLPYIVSRC 66

Query: 70  PKILTICLNGKLVPMVECLATLGTKP----------------------------FDALDI 129
           PKILT+ L+ +L+PMVECL++LG  P                            F AL +
Sbjct: 67  PKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQALGV 126

Query: 130 PEKQPGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYSVDKR 189
           PE Q GK IL NPRLISYSI  KL+ IV FLAS GLD++GMIGKVLVK PFLMGYSVDKR
Sbjct: 127 PETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVDKR 186

Query: 190 QRPTLEFLKS-------------------------------------MGLKDVDVQAVAV 225
            RPT EFLKS                                      G  D  +  +  
Sbjct: 187 LRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATMVT 246

[Close]

BLAST of Clc02G11350 vs. TAIR 10
Match: AT4G38160.2 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 243.8 bits (621), Expect = 1.3e-64
Identity = 135/288 (46.88%), Postives = 168/288 (58.33%), Query Frame = 0


Query: 10  TTILWFFRSNGFEEKGIHEMFTKCKRFEGTHKEIASENWDYLQNI-GIQERKLRYMVSKY 69
           ++I+WFFR  GF++  I +M  KCK+ E    ++ASENWDYL NI GIQERKL Y+VS+ 
Sbjct: 7   SSIMWFFRDKGFDDPSIDKMLRKCKQLEKAQSDVASENWDYLSNIVGIQERKLPYIVSRC 66

Query: 70  PKILTICLNGKLVPMVECLATLGTKP----------------------------FDALDI 129
           PKILT+ L+ +L+PMVECL++LG  P                            F AL +
Sbjct: 67  PKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQALGV 126

Query: 130 PEKQPGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYSVDKR 189
           PE Q GK IL NPRLISYSI  KL+ IV FLAS GLD++GMIGKVLVK PFLMGYSVDKR
Sbjct: 127 PETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVDKR 186

Query: 190 QRPTLEFLKS-------------------------------------MGLKDVDVQAVAV 225
            RPT EFLKS                                      G  D  +  +  
Sbjct: 187 LRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATMVT 246

[Close]

BLAST of Clc02G11350 vs. TAIR 10
Match: AT4G38160.3 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 243.8 bits (621), Expect = 1.3e-64
Identity = 135/288 (46.88%), Postives = 168/288 (58.33%), Query Frame = 0


Query: 10  TTILWFFRSNGFEEKGIHEMFTKCKRFEGTHKEIASENWDYLQNI-GIQERKLRYMVSKY 69
           ++I+WFFR  GF++  I +M  KCK+ E    ++ASENWDYL NI GIQERKL Y+VS+ 
Sbjct: 7   SSIMWFFRDKGFDDPSIDKMLRKCKQLEKAQSDVASENWDYLSNIVGIQERKLPYIVSRC 66

Query: 70  PKILTICLNGKLVPMVECLATLGTKP----------------------------FDALDI 129
           PKILT+ L+ +L+PMVECL++LG  P                            F AL +
Sbjct: 67  PKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQALGV 126

Query: 130 PEKQPGKTILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYSVDKR 189
           PE Q GK IL NPRLISYSI  KL+ IV FLAS GLD++GMIGKVLVK PFLMGYSVDKR
Sbjct: 127 PETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVDKR 186

Query: 190 QRPTLEFLKS-------------------------------------MGLKDVDVQAVAV 225
            RPT EFLKS                                      G  D  +  +  
Sbjct: 187 LRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATMVT 246

[Close]

BLAST of Clc02G11350 vs. TAIR 10
Match: AT4G14605.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 72.8 bits (177), Expect = 4.0e-13
Identity = 53/167 (31.74%), Postives = 89/167 (53.29%), Query Frame = 0


Query: 49  DYLQNIGIQERKLRYMVSKYPKILTICLNGKLVPMVECLATLGTKPFDALDIPEKQPGKT 108
           ++L ++GI +  +  ++ K P+I  I L   L P +  L TLG        I + Q  K 
Sbjct: 237 EFLLDLGIPKSDIPTILCKRPQICGISLTDNLKPTMAFLETLG--------IDKNQWAKI 296

Query: 109 ILLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYSVDKRQRPTLEFL 168
           I   P +++YS   KL+  V+FL+  GL +E  IG++L + P +M YSV+ + RPT+E+ 
Sbjct: 297 ISRFPAILTYS-RQKLTSTVEFLSQTGLTEE-QIGRILTRCPNIMSYSVEDKLRPTMEYF 356

Query: 169 KSMGLKDVDVQAVAVGYP-------EHSIEPGINFLIEVMGRRIDEV 209
           +S+   +VDV  +    P       E +++P   F +E  G  +DE+
Sbjct: 357 RSL---NVDVAVLLHRCPQTFGLSIESNLKPVTEFFLE-KGFGLDEI 389

[Close]

BLAST of Clc02G11350 vs. TAIR 10
Match: AT2G44020.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-12
Identity = 44/156 (28.21%), Postives = 82/156 (52.56%), Query Frame = 0


Query: 50  YLQNIGIQERKLRYMVSKYPKILTICLNGKLVPMVECLATLGTKPFDALDIPEKQPGKTI 109
           YL+ IGI   KL   V  YP++L   +  +L P+V+ L          LD+ ++  G  +
Sbjct: 150 YLEKIGISRSKLGEFVKNYPQVLHASVVVELAPVVKFLR--------GLDVEKQDLGYVL 209

Query: 110 LLNPRLISYSIVPKLSEIVDFLASFGLDKEGMIGKVLVKYPFLMGYSVDKRQRPTLEFLK 169
           +  P L+ + +   +S  V +L S G+     IG ++ +YP+L+G  V    +P +++L 
Sbjct: 210 MKYPELLGFKLEGTMSTSVAYLVSIGVSPRD-IGPMVTQYPYLLGMRVGTMIKPLVDYLI 269

Query: 170 SMGL------KDVDVQAVAVGYP-EHSIEPGINFLI 199
           S+GL      + ++ ++  VGY  E +++P ++ LI
Sbjct: 270 SIGLPKKIVARMLEKRSYIVGYNLEETVKPNVDCLI 296

The following BLAST results are available for this feature:

BLAST of Clc02G11350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_021301114.1	4.8e-77	54.39	transcription termination factor MTERF6, chloroplastic/mitochondrial [Herrania u...	[more]
EOX98953.1	8.2e-77	54.05	Mitochondrial transcription termination factor family protein [Theobroma cacao]	[more]
OMO72115.1	1.1e-76	54.05	Mitochodrial transcription termination factor-related protein [Corchorus capsula...	[more]
XP_007043122.2	1.8e-76	53.72	PREDICTED: transcription termination factor MTERF6, chloroplastic/mitochondrial ...	[more]
OMP10113.1	2.4e-76	53.72	Mitochodrial transcription termination factor-related protein [Corchorus olitori...	[more]

BLAST of Clc02G11350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL6	1.8e-63	46.88	Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidop...	[more]
F4JVI3	5.6e-12	31.74	Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q6AUK6	1.1e-10	24.32	Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. ja...	[more]
Q9FM80	1.2e-09	22.32	Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana O...	[more]
F4IHL3	1.5e-09	22.78	Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana O...	[more]

BLAST of Clc02G11350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BSC3	2.3e-77	54.39	transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Herrania...	[more]
A0A5B6Z9F0	3.0e-77	54.79	Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_009937 PE=3 SV=1	[more]
A0A061E9I9	4.0e-77	54.05	Mitochondrial transcription termination factor family protein OS=Theobroma cacao...	[more]
A0A1R3HP25	5.2e-77	54.05	Mitochodrial transcription termination factor-related protein OS=Corchorus capsu...	[more]
A0A1R3KSP4	1.2e-76	53.72	Mitochodrial transcription termination factor-related protein OS=Corchorus olito...	[more]

BLAST of Clc02G11350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38160.1	1.3e-64	46.88	Mitochondrial transcription termination factor family protein	[more]
AT4G38160.2	1.3e-64	46.88	Mitochondrial transcription termination factor family protein	[more]
AT4G38160.3	1.3e-64	46.88	Mitochondrial transcription termination factor family protein	[more]
AT4G14605.1	4.0e-13	31.74	Mitochondrial transcription termination factor family protein	[more]
AT2G44020.1	1.5e-12	28.21	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 143..174 e-value: 4.4E-7 score: 39.5 coord: 62..93 e-value: 34.0 score: 13.3 coord: 106..137 e-value: 0.13 score: 21.3
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 11..223 e-value: 2.4E-20 score: 72.7
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 11..94 coord: 96..187
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 187..224
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 95..225 e-value: 2.0E-17 score: 65.2
None	No IPR available	PANTHER	PTHR13068:SF5	TRANSCRIPTION TERMINATION FACTOR MTERF6, CHLOROPLASTIC/MITOCHONDRIAL	coord: 187..224
None	No IPR available	PANTHER	PTHR13068:SF5	TRANSCRIPTION TERMINATION FACTOR MTERF6, CHLOROPLASTIC/MITOCHONDRIAL	coord: 11..94 coord: 96..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G11350.2	Clc02G11350.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003690	double-stranded DNA binding